Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0004868

Physical Location & Seq

Genomic Coordinates Forward (+)

49910825 .. 49911620

Gene Structure 796 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG239700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

ATGGCGGTAATAGAAGGCGTTTATTTTGGTCTATGCGTATGCGACGGTAAGTTCATTGATGTTGGAAACATGGTTTCTCCCACAATTTTTGTCCGTCGTAGTTTTTCTTATCTCATGGATGAGATGCCTCTGGAACCTTTAAACGATGCAATGCAAGCTCAAGTAATTTCCCCAATATGGCACATTGCATCTTATCTACAGGTTGCCGCCCTTTCTGCACTCGGAATGGAGACTAAGGCACAATCAGCACTGAAGGAGGGTACTGTGCTTGAAACCAAAAGGAACACTGCAGCGGGACTCGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009506 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009987 GO:0010033 GO:0014070 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0030054 GO:0032870 GO:0033993 GO:0036211 GO:0038023 GO:0042221 GO:0043170 GO:0043401 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048545 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0060089 GO:0065007 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

101

Amino Acids

11.0

Weight (kDa)

4.83

Isoelectric Point (pI)

52.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_BSK1_C	PF25575	14 - 67	9e-20	Serine/threonine-protein kinase BSK1-like, TPR repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0004868)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g14100
malus_domestica	MD01G1056900.v1.1 MD14G1186200.v1.1 MD14G1186400.v1.1 MD14G1186600.v1.1
pyrus_communis	pycom01g08300 pycom01g08310 pycom01g08390 pycom01g08420 pycom01g08480 pycom01g08650 pycom01g08680 pycom01g08710 pycom02g23240
rosa_chinensis	RchiOBHm_Chr1g0324601 RchiOBHm_Chr1g0354681 RchiOBHm_Chr1g0354861
rosa_laevigata	RLG00000028186
rosa_multiflora	Rmu_sc0003940.1_g000003 Rmu_sc0006632.1_g000017
rosa_roxburghii	Rroxscaffold_4G00325320
rosa_rugosa	Rorug01G0244200 Rorug01G0244200 Rorug01G0244300
rosa_samantha	Rh1AG255200 Rh1AG256400 Rh1BG225700 Rh1CG239700
rosa_wichuraiana	Rw1G022330 Rw1G022370 Rw1G022400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	5, 207, 293
AcuI	CTGAAG	1 cut(s)	272
AfaI	GTAC	1 cut(s)	262
AfiI	CCNNNNNNNGG	1 cut(s)	177
AgsI	TTSAA	1 cut(s)	272
AluBI	AGCT	1 cut(s)	158
AluI	AGCT	1 cut(s)	158
Alw26I	GTCTC	1 cut(s)	224
Ama87I	CYCGRG	1 cut(s)	299
ApeKI	GCWGC	1 cut(s)	290
AvaI	CYCGRG	1 cut(s)	299
BbvI	GCAGC	1 cut(s)	302
BcoDI	GTCTC	1 cut(s)	224
BfmI	CTRYAG	2 cut(s)	197, 288
BisI	GCNGC	2 cut(s)	207, 291
BlsI	GCNGC	2 cut(s)	208, 292
BmeT110I	CYCGRG	1 cut(s)	299
BmiI	GGNNCC	1 cut(s)	135
BmsI	GCATC	3 cut(s)	114, 136, 197
BpuEI	CTTGAG	1 cut(s)	144
Bsc4I	CCNNNNNNNGG	1 cut(s)	177
Bse3DI	GCAATG	2 cut(s)	156, 183
BseGI	GGATG	1 cut(s)	124
BseLI	CCNNNNNNNGG	1 cut(s)	177
BseMI	GCAATG	2 cut(s)	156, 183
BseXI	GCAGC	1 cut(s)	302
BsgI	GTGCAG	1 cut(s)	201
BsiHKCI	CYCGRG	1 cut(s)	299
BslI	CCNNNNNNNGG	1 cut(s)	177
BsmAI	GTCTC	1 cut(s)	224
BsoBI	CYCGRG	1 cut(s)	299
BspACI	CCGC	3 cut(s)	5, 207, 293
BspLI	GGNNCC	1 cut(s)	135
BspMAI	CTGCAG	1 cut(s)	292
BsrDI	GCAATG	2 cut(s)	156, 183
Bst4CI	ACNGT	2 cut(s)	47, 265
BstC8I	GCNNGC	1 cut(s)	156
BstDEI	CTNAG	1 cut(s)	234
BstF5I	GGATG	1 cut(s)	124
BstMAI	GTCTC	1 cut(s)	224
BstMWI	GCNNNNNNNGC	3 cut(s)	155, 215, 245
BstSFI	CTRYAG	2 cut(s)	197, 288
BstV1I	GCAGC	1 cut(s)	302
BtsCI	GGATG	1 cut(s)	124
BtsI	GCAGTG	1 cut(s)	285
BtsIMutI	CAGTG	2 cut(s)	248, 285
Cac8I	GCNNGC	1 cut(s)	156
Csp6I	GTAC	1 cut(s)	261
CspCI	CAANNNNNGTGG	2 cut(s)	70, 105
CviAII	CATG	2 cut(s)	70, 115
CviJI	RGCY	1 cut(s)	158
CviKI_1	RGCY	1 cut(s)	158
CviQI	GTAC	1 cut(s)	261
DdeI	CTNAG	1 cut(s)	234
DraI	TTTAAA	1 cut(s)	141
Eco57I	CTGAAG	1 cut(s)	272
Eco88I	CYCGRG	1 cut(s)	299
FaeI	CATG	2 cut(s)	73, 118
FaiI	YATR	5 cut(s)	34, 40, 71, 116, 178
FatI	CATG	2 cut(s)	69, 114
FauI	CCCGC	1 cut(s)	286
Fnu4HI	GCNGC	2 cut(s)	207, 291
FokI	GGATG	1 cut(s)	131
Fsp4HI	GCNGC	2 cut(s)	207, 291
GluI	GCNGC	2 cut(s)	207, 291
Hin1II	CATG	2 cut(s)	73, 118
HinfI	GANTC	1 cut(s)	297
Hpy188I	TCNGA	1 cut(s)	224
Hpy188III	TCNNGA	1 cut(s)	131
Hpy99I	CGWCG	2 cut(s)	47, 99
HpyAV	CCTTC	2 cut(s)	8, 247
HpyCH4III	ACNGT	2 cut(s)	47, 265
HpyCH4V	TGCA	5 cut(s)	149, 154, 188, 218, 290
HpyF10VI	GCNNNNNNNGC	3 cut(s)	155, 215, 245
HpyF3I	CTNAG	1 cut(s)	234
Hsp92II	CATG	2 cut(s)	73, 118
LpnPI	CCDG	2 cut(s)	116, 185
Lsp1109I	GCAGC	1 cut(s)	302
LweI	GCATC	3 cut(s)	114, 136, 197
MluCI	AATT	2 cut(s)	84, 165
MlyI	GAGTC	1 cut(s)	291
MmeI	TCCRAC	1 cut(s)	43
MnlI	CCTC	2 cut(s)	138, 250
MseI	TTAA	1 cut(s)	140
MspA1I	CMGCKG	1 cut(s)	293
MwoI	GCNNNNNNNGC	3 cut(s)	155, 215, 245
NlaIII	CATG	2 cut(s)	73, 118
NlaIV	GGNNCC	1 cut(s)	135
PaeR7I	CTCGAG	1 cut(s)	299
PkrI	GCNGC	2 cut(s)	208, 292
PleI	GAGTC	1 cut(s)	291
PpsI	GAGTC	1 cut(s)	291
PspN4I	GGNNCC	1 cut(s)	135
PspXI	VCTCGAGB	1 cut(s)	299
PstI	CTGCAG	1 cut(s)	292
RsaI	GTAC	1 cut(s)	262
RsaNI	GTAC	1 cut(s)	261
SaqAI	TTAA	1 cut(s)	140
SatI	GCNGC	2 cut(s)	207, 291
SchI	GAGTC	1 cut(s)	291
SetI	ASST	3 cut(s)	139, 160, 204
SfaNI	GCATC	3 cut(s)	114, 136, 197
SfcI	CTRYAG	2 cut(s)	197, 288
Sfr274I	CTCGAG	1 cut(s)	299
SgeI	CNNG	8 cut(s)	82, 127, 143, 167, 173, 212, 233, 281
SlaI	CTCGAG	1 cut(s)	299
SmlI	CTYRAG	2 cut(s)	159, 299
SmoI	CTYRAG	2 cut(s)	159, 299
Sse9I	AATT	2 cut(s)	84, 165
SsiI	CCGC	3 cut(s)	5, 207, 293
TaaI	ACNGT	2 cut(s)	47, 265
TaqI	TCGA	1 cut(s)	300
TasI	AATT	2 cut(s)	84, 165
TauI	GCSGC	1 cut(s)	209
Tru1I	TTAA	1 cut(s)	140
Tru9I	TTAA	1 cut(s)	140
TscAI	CASTG	2 cut(s)	255, 292
TseI	GCWGC	1 cut(s)	290
TspDTI	ATGAA	1 cut(s)	43
TspGWI	ACGGA	1 cut(s)	83
TspRI	CASTG	2 cut(s)	255, 292
XhoI	CTCGAG	1 cut(s)	299

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.