Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0004868

Physical Location & Seq

Genomic Coordinates Forward (+)

9342313 .. 9342516

Gene Structure 204 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g08420.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 204 bp

ATGCTTAACATGGGTATCCCACATGGTGCCTCCTGGTCTTCTCTTTCACCACTCGGTGAAGCCTGCTCAAGAAGGGATTTGACTGCTTTACATGATATCCTAGAGAATATCGGCTATAAAGACAATGGAATGACAAATGAGGTCCTATTTTTGTTTAATAAATGGAGAAATAAATATCTAATAAGTTGTGTTGTATATATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009506 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009987 GO:0010033 GO:0014070 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0030054 GO:0032870 GO:0033993 GO:0036211 GO:0038023 GO:0042221 GO:0043170 GO:0043401 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048545 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0060089 GO:0065007 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

68

Amino Acids

7.62

Weight (kDa)

6.7

Isoelectric Point (pI)

46.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_BSK1_C	PF25575	20 - 57	3.1e-08	Serine/threonine-protein kinase BSK1-like, TPR repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0004868)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g14100
malus_domestica	MD01G1056900.v1.1 MD14G1186200.v1.1 MD14G1186400.v1.1 MD14G1186600.v1.1
pyrus_communis	pycom01g08300 pycom01g08310 pycom01g08390 pycom01g08420 pycom01g08480 pycom01g08650 pycom01g08680 pycom01g08710 pycom02g23240
rosa_chinensis	RchiOBHm_Chr1g0324601 RchiOBHm_Chr1g0354681 RchiOBHm_Chr1g0354861
rosa_laevigata	RLG00000028186
rosa_multiflora	Rmu_sc0003940.1_g000003 Rmu_sc0006632.1_g000017
rosa_roxburghii	Rroxscaffold_4G00325320
rosa_rugosa	Rorug01G0244200 Rorug01G0244200 Rorug01G0244300
rosa_samantha	Rh1AG255200 Rh1AG256400 Rh1BG225700 Rh1CG239700
rosa_wichuraiana	Rw1G022330 Rw1G022370 Rw1G022400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	26
AdeI	CACNNNGTG	2 cut(s)	26, 56
AjnI	CCWGG	1 cut(s)	32
AspS9I	GGNCC	1 cut(s)	142
AsuHPI	GGTGA	2 cut(s)	39, 68
AvaII	GGWCC	1 cut(s)	142
BaeI	ACNNNNGTAYC	1 cut(s)	31
BanI	GGYRCC	1 cut(s)	26
BbsI	GAAGAC	1 cut(s)	30
BciT130I	CCWGG	1 cut(s)	34
BciVI	GTATCC	1 cut(s)	26
BfaI	CTAG	1 cut(s)	101
BfuI	GTATCC	1 cut(s)	26
Bme1390I	CCNGG	1 cut(s)	34
Bme18I	GGWCC	1 cut(s)	142
BmgT120I	GGNCC	1 cut(s)	142
BmiI	GGNNCC	1 cut(s)	28
BmrFI	CCNGG	1 cut(s)	34
BpiI	GAAGAC	1 cut(s)	30
BpuEI	CTTGAG	1 cut(s)	52
BseBI	CCWGG	1 cut(s)	34
BshNI	GGYRCC	1 cut(s)	26
BspLI	GGNNCC	1 cut(s)	28
BspT107I	GGYRCC	1 cut(s)	26
Bst2UI	CCWGG	1 cut(s)	34
BstC8I	GCNNGC	1 cut(s)	64
BstNI	CCWGG	1 cut(s)	34
BstSCI	CCNGG	1 cut(s)	32
BstV2I	GAAGAC	1 cut(s)	30
BsuI	GTATCC	1 cut(s)	26
Cac8I	GCNNGC	1 cut(s)	64
Cfr13I	GGNCC	1 cut(s)	142
CviAII	CATG	3 cut(s)	10, 23, 92
CviJI	RGCY	2 cut(s)	62, 114
CviKI_1	RGCY	2 cut(s)	62, 114
DraIII	CACNNNGTG	2 cut(s)	26, 56
Eco32I	GATATC	1 cut(s)	97
Eco47I	GGWCC	1 cut(s)	142
EcoO109I	RGGNCCY	1 cut(s)	142
EcoRII	CCWGG	1 cut(s)	32
EcoRV	GATATC	1 cut(s)	97
FaeI	CATG	3 cut(s)	13, 26, 95
FaiI	YATR	6 cut(s)	11, 24, 93, 117, 196, 198
FatI	CATG	3 cut(s)	9, 22, 91
FspBI	CTAG	1 cut(s)	101
Hin1II	CATG	3 cut(s)	13, 26, 95
HphI	GGTGA	2 cut(s)	39, 68
Hpy188III	TCNNGA	1 cut(s)	69
HpyAV	CCTTC	1 cut(s)	66
Hsp92II	CATG	3 cut(s)	13, 26, 95
LpnPI	CCDG	3 cut(s)	19, 46, 76
MaeI	CTAG	1 cut(s)	101
MboII	GAAGA	1 cut(s)	30
MnlI	CCTC	2 cut(s)	40, 133
MseI	TTAA	2 cut(s)	6, 156
MspR9I	CCNGG	1 cut(s)	34
MvaI	CCWGG	1 cut(s)	34
NlaIII	CATG	3 cut(s)	13, 26, 95
NlaIV	GGNNCC	1 cut(s)	28
PpuMI	RGGWCCY	1 cut(s)	142
Psp5II	RGGWCCY	1 cut(s)	142
Psp6I	CCWGG	1 cut(s)	32
PspGI	CCWGG	1 cut(s)	32
PspN4I	GGNNCC	1 cut(s)	28
PspPI	GGNCC	1 cut(s)	142
PspPPI	RGGWCCY	1 cut(s)	142
SaqAI	TTAA	2 cut(s)	6, 156
Sau96I	GGNCC	1 cut(s)	142
ScrFI	CCNGG	1 cut(s)	34
SetI	ASST	1 cut(s)	144
SgeI	CNNG	9 cut(s)	22, 35, 45, 46, 65, 75, 81, 104, 113
SinI	GGWCC	1 cut(s)	142
SmlI	CTYRAG	1 cut(s)	67
SmoI	CTYRAG	1 cut(s)	67
SspMI	CTAG	1 cut(s)	101
StyD4I	CCNGG	1 cut(s)	32
Tru1I	TTAA	2 cut(s)	6, 156
Tru9I	TTAA	2 cut(s)	6, 156
VpaK11BI	GGWCC	1 cut(s)	142
XspI	CTAG	1 cut(s)	101

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.