Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0004868

Physical Location & Seq

Genomic Coordinates Forward (+)

27888991 .. 27892542

Gene Structure 3552 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1186600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGAGTGACAAGCCTCAGGAACCTCTCAACGATGCAATGCAAGCACAAGTAGTTTCCCCAGTTTGGCACATTGTATCTTATCTTCAGGGTGCTGCCCTTTTGGCCATTCAGATGCTGACAGATTCTTGCTTGGAAGGACAGCTTTCTAATGATGATGGTACCAAGTTGGCACGAGGTTTGATAAGAGTCATTGGAGTTGGAACAATGGTTTCTCCAACAATTTTTGACCGGCGTAGTTTGTCTTATCTCATGAGTGACAAGCCTCAGGAAGCTATAGAAGATGCAATGCAAGCACGAGTAGTTTCGCCAGTTTGGCACATTGCATGTTATCTTCAGGCTGTTGCCCTTTCGGCCCTTGGAATGGTACTATGCTTGAATCCAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009506 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009987 GO:0010033 GO:0014070 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0030054 GO:0032870 GO:0033993 GO:0036211 GO:0038023 GO:0042221 GO:0043170 GO:0043401 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048545 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0060089 GO:0065007 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

129

Amino Acids

13.91

Weight (kDa)

5.15

Isoelectric Point (pI)

67.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_BSK1_C	PF25575	1 - 29	2.9e-07	Serine/threonine-protein kinase BSK1-like, TPR repeats
TPR_BSK1_C	PF25575	62 - 113	2.5e-20	Serine/threonine-protein kinase BSK1-like, TPR repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004868)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g14100
malus_domestica	MD01G1056900.v1.1 MD14G1186200.v1.1 MD14G1186400.v1.1 MD14G1186600.v1.1
pyrus_communis	pycom01g08300 pycom01g08310 pycom01g08390 pycom01g08420 pycom01g08480 pycom01g08650 pycom01g08680 pycom01g08710 pycom02g23240
rosa_chinensis	RchiOBHm_Chr1g0324601 RchiOBHm_Chr1g0354681 RchiOBHm_Chr1g0354861
rosa_laevigata	RLG00000028186
rosa_multiflora	Rmu_sc0003940.1_g000003 Rmu_sc0006632.1_g000017
rosa_roxburghii	Rroxscaffold_4G00325320
rosa_rugosa	Rorug01G0244200 Rorug01G0244200 Rorug01G0244300
rosa_samantha	Rh1AG255200 Rh1AG256400 Rh1BG225700 Rh1CG239700
rosa_wichuraiana	Rw1G022330 Rw1G022370 Rw1G022400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	158
AccB1I	GGYRCC	1 cut(s)	158
AcoI	YGGCCR	1 cut(s)	102
AcuI	CTGAAG	2 cut(s)	68, 317
AfaI	GTAC	2 cut(s)	160, 366
AfiI	CCNNNNNNNGG	2 cut(s)	63, 361
AgsI	TTSAA	1 cut(s)	376
AluBI	AGCT	2 cut(s)	142, 272
AluI	AGCT	2 cut(s)	142, 272
AlwNI	CAGNNNCTG	1 cut(s)	115
AoxI	GGCC	2 cut(s)	102, 351
ApeKI	GCWGC	1 cut(s)	92
Asp718I	GGTACC	1 cut(s)	158
AspS9I	GGNCC	1 cut(s)	352
AxyI	CCTNAGG	2 cut(s)	15, 264
BalI	TGGCCA	1 cut(s)	104
BanI	GGYRCC	1 cut(s)	158
BarI	GAAGNNNNNNTAC	2 cut(s)	66, 98
BauI	CACGAG	2 cut(s)	171, 294
BbvI	GCAGC	1 cut(s)	79
BccI	CCATC	1 cut(s)	149
BfmI	CTRYAG	1 cut(s)	273
BglI	GCCNNNNNGGC	3 cut(s)	101, 313, 350
BisI	GCNGC	1 cut(s)	93
BlsI	GCNGC	1 cut(s)	94
BmgT120I	GGNCC	1 cut(s)	352
BmiI	GGNNCC	2 cut(s)	21, 160
BmrI	ACTGGG	1 cut(s)	53
BmsI	GCATC	3 cut(s)	22, 102, 271
BmuI	ACTGGG	1 cut(s)	53
BsaJI	CCNNGG	1 cut(s)	355
Bsc4I	CCNNNNNNNGG	2 cut(s)	63, 361
Bse118I	RCCGGY	1 cut(s)	228
Bse1I	ACTGG	2 cut(s)	59, 308
Bse21I	CCTNAGG	2 cut(s)	15, 264
Bse3DI	GCAATG	3 cut(s)	42, 291, 318
BseDI	CCNNGG	1 cut(s)	355
BseLI	CCNNNNNNNGG	2 cut(s)	63, 361
BseMI	GCAATG	3 cut(s)	42, 291, 318
BseMII	CTCAG	2 cut(s)	29, 278
BseNI	ACTGG	2 cut(s)	59, 308
BseXI	GCAGC	1 cut(s)	79
BshFI	GGCC	2 cut(s)	104, 353
BshNI	GGYRCC	1 cut(s)	158
BsiSI	CCGG	1 cut(s)	229
BslI	CCNNNNNNNGG	2 cut(s)	63, 361
BsnI	GGCC	2 cut(s)	104, 353
BspANI	GGCC	2 cut(s)	104, 353
BspCNI	CTCAG	2 cut(s)	28, 277
BspHI	TCATGA	1 cut(s)	249
BspLI	GGNNCC	2 cut(s)	21, 160
BspT107I	GGYRCC	1 cut(s)	158
BsrDI	GCAATG	3 cut(s)	42, 291, 318
BsrFI	RCCGGY	1 cut(s)	228
BsrI	ACTGG	2 cut(s)	59, 308
BssAI	RCCGGY	1 cut(s)	228
BssECI	CCNNGG	1 cut(s)	355
BssSI	CACGAG	2 cut(s)	171, 294
BssT1I	CCWWGG	1 cut(s)	355
Bst2BI	CACGAG	2 cut(s)	171, 294
BstC8I	GCNNGC	2 cut(s)	42, 291
BstDEI	CTNAG	2 cut(s)	15, 264
BstMWI	GCNNNNNNNGC	5 cut(s)	41, 101, 290, 313, 350
BstNSI	RCATGY	1 cut(s)	327
BstSFI	CTRYAG	1 cut(s)	273
BstV1I	GCAGC	1 cut(s)	79
Bsu36I	CCTNAGG	2 cut(s)	15, 264
BsuRI	GGCC	2 cut(s)	104, 353
Cac8I	GCNNGC	2 cut(s)	42, 291
CaiI	CAGNNNCTG	1 cut(s)	115
CciI	TCATGA	1 cut(s)	249
Cfr10I	RCCGGY	1 cut(s)	228
Cfr13I	GGNCC	1 cut(s)	352
Csp6I	GTAC	2 cut(s)	159, 365
CviAII	CATG	2 cut(s)	250, 324
CviJI	RGCY	7 cut(s)	13, 104, 142, 262, 272, 338, 353
CviKI_1	RGCY	7 cut(s)	13, 104, 142, 262, 272, 338, 353
CviQI	GTAC	2 cut(s)	159, 365
DdeI	CTNAG	2 cut(s)	15, 264
EaeI	YGGCCR	1 cut(s)	102
Eco130I	CCWWGG	1 cut(s)	355
Eco57I	CTGAAG	2 cut(s)	68, 317
Eco81I	CCTNAGG	2 cut(s)	15, 264
EcoT14I	CCWWGG	1 cut(s)	355
ErhI	CCWWGG	1 cut(s)	355
FaeI	CATG	2 cut(s)	253, 327
FaiI	YATR	4 cut(s)	251, 275, 325, 370
FalI	AAGNNNNNCTT	2 cut(s)	126, 158
FatI	CATG	2 cut(s)	249, 323
Fnu4HI	GCNGC	1 cut(s)	93
Fsp4HI	GCNGC	1 cut(s)	93
GluI	GCNGC	1 cut(s)	93
HaeIII	GGCC	2 cut(s)	104, 353
HapII	CCGG	1 cut(s)	229
Hin1II	CATG	2 cut(s)	253, 327
HinfI	GANTC	3 cut(s)	122, 186, 376
HpaII	CCGG	1 cut(s)	229
Hpy188I	TCNGA	1 cut(s)	111
Hpy188III	TCNNGA	3 cut(s)	17, 250, 266
HpyAV	CCTTC	1 cut(s)	128
HpyCH4V	TGCA	5 cut(s)	35, 40, 284, 289, 323
HpyF10VI	GCNNNNNNNGC	5 cut(s)	41, 101, 290, 313, 350
HpyF3I	CTNAG	2 cut(s)	15, 264
Hsp92II	CATG	2 cut(s)	253, 327
KpnI	GGTACC	1 cut(s)	162
LpnPI	CCDG	7 cut(s)	2, 71, 72, 242, 251, 320, 321
Lsp1109I	GCAGC	1 cut(s)	79
LweI	GCATC	3 cut(s)	22, 102, 271
MaeIII	GTNAC	2 cut(s)	5, 254
MboII	GAAGA	3 cut(s)	74, 290, 323
MlsI	TGGCCA	1 cut(s)	104
MluCI	AATT	1 cut(s)	219
MluNI	TGGCCA	1 cut(s)	104
MlyI	GAGTC	1 cut(s)	195
MmeI	TCCRAC	2 cut(s)	178, 239
MnlI	CCTC	4 cut(s)	24, 33, 167, 273
Mox20I	TGGCCA	1 cut(s)	104
MscI	TGGCCA	1 cut(s)	104
MslI	CAYNNNNRTG	1 cut(s)	110
Msp20I	TGGCCA	1 cut(s)	104
MspI	CCGG	1 cut(s)	229
MwoI	GCNNNNNNNGC	5 cut(s)	41, 101, 290, 313, 350
NlaIII	CATG	2 cut(s)	253, 327
NlaIV	GGNNCC	2 cut(s)	21, 160
NmuCI	GTSAC	2 cut(s)	5, 254
NspI	RCATGY	1 cut(s)	327
PagI	TCATGA	1 cut(s)	249
PfeI	GAWTC	2 cut(s)	122, 376
PkrI	GCNGC	1 cut(s)	94
PleI	GAGTC	1 cut(s)	194
PpsI	GAGTC	1 cut(s)	194
PspN4I	GGNNCC	2 cut(s)	21, 160
PspPI	GGNCC	1 cut(s)	352
PstNI	CAGNNNCTG	1 cut(s)	115
RsaI	GTAC	2 cut(s)	160, 366
RsaNI	GTAC	2 cut(s)	159, 365
RseI	CAYNNNNRTG	1 cut(s)	110
SatI	GCNGC	1 cut(s)	93
Sau96I	GGNCC	1 cut(s)	352
SchI	GAGTC	1 cut(s)	195
SetI	ASST	4 cut(s)	25, 144, 178, 274
SfaNI	GCATC	3 cut(s)	22, 102, 271
SfcI	CTRYAG	1 cut(s)	273
SmiMI	CAYNNNNRTG	1 cut(s)	110
Sse9I	AATT	1 cut(s)	219
StyI	CCWWGG	1 cut(s)	355
TasI	AATT	1 cut(s)	219
TfiI	GAWTC	2 cut(s)	122, 376
TseFI	GTSAC	2 cut(s)	5, 254
TseI	GCWGC	1 cut(s)	92
Tsp45I	GTSAC	2 cut(s)	5, 254
XceI	RCATGY	1 cut(s)	327

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.