Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0004868

Physical Location & Seq

Genomic Coordinates Forward (+)

16187691 .. 16195651

Gene Structure 7961 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1056900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 330 bp

ATGCACAAGTTCGTTGATGTCAAAACGATTGTTTCTCCAACAACTTTTGCCCGGCGTAGTTTGTCTTATCTCATGAGTGACATGCCTCAGGAAGCTATAAACGATGCAATGCAAGCACAAGTAGTTTCCCCAGTTTGGCACTTGCATGTTATCTTCAGGCTGTTGCCCTTTCGGCCCTTGGAATGGATGGTGAAGCTCAAGCAGCACTTAAGGAGGGTACTATGCTTGAATCCTAAAGGAGCAAAGCAGCTGGACAGAAGTGAATATCTAGGCCGGTCAACAAGGTGCCTAGTTTGCCACTTCTCTCGGTTTGGCTCTCAGCTTATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009506 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009987 GO:0010033 GO:0014070 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0030054 GO:0032870 GO:0033993 GO:0036211 GO:0038023 GO:0042221 GO:0043170 GO:0043401 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048545 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0060089 GO:0065007 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

110

Amino Acids

12.75

Weight (kDa)

10.22

Isoelectric Point (pI)

79.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_BSK1_C	PF25575	3 - 49	7.4e-18	Serine/threonine-protein kinase BSK1-like, TPR repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004868)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g14100
malus_domestica	MD01G1056900.v1.1 MD14G1186200.v1.1 MD14G1186400.v1.1 MD14G1186600.v1.1
pyrus_communis	pycom01g08300 pycom01g08310 pycom01g08390 pycom01g08420 pycom01g08480 pycom01g08650 pycom01g08680 pycom01g08710 pycom02g23240
rosa_chinensis	RchiOBHm_Chr1g0324601 RchiOBHm_Chr1g0354681 RchiOBHm_Chr1g0354861
rosa_laevigata	RLG00000028186
rosa_multiflora	Rmu_sc0003940.1_g000003 Rmu_sc0006632.1_g000017
rosa_roxburghii	Rroxscaffold_4G00325320
rosa_rugosa	Rorug01G0244200 Rorug01G0244200 Rorug01G0244300
rosa_samantha	Rh1AG255200 Rh1AG256400 Rh1BG225700 Rh1CG239700
rosa_wichuraiana	Rw1G022330 Rw1G022370 Rw1G022400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	285
AcuI	CTGAAG	1 cut(s)	139
AfaI	GTAC	1 cut(s)	219
AfiI	CCNNNNNNNGG	2 cut(s)	135, 183
AflII	CTTAAG	1 cut(s)	208
AgsI	TTSAA	1 cut(s)	229
AluBI	AGCT	4 cut(s)	95, 196, 250, 322
AluI	AGCT	4 cut(s)	95, 196, 250, 322
AoxI	GGCC	2 cut(s)	173, 271
ApeKI	GCWGC	2 cut(s)	202, 247
AspS9I	GGNCC	1 cut(s)	174
AsuC2I	CCSGG	1 cut(s)	52
AsuHPI	GGTGA	1 cut(s)	202
AxyI	CCTNAGG	1 cut(s)	87
BanI	GGYRCC	1 cut(s)	285
BbvI	GCAGC	2 cut(s)	214, 259
BccI	CCATC	1 cut(s)	181
BcnI	CCSGG	1 cut(s)	52
BfaI	CTAG	2 cut(s)	269, 290
BfrI	CTTAAG	1 cut(s)	208
BglI	GCCNNNNNGGC	1 cut(s)	172
BisI	GCNGC	2 cut(s)	203, 248
BlsI	GCNGC	2 cut(s)	204, 249
Bme1390I	CCNGG	1 cut(s)	52
BmgT120I	GGNCC	1 cut(s)	174
BmiI	GGNNCC	1 cut(s)	287
BmrFI	CCNGG	1 cut(s)	52
BmrI	ACTGGG	1 cut(s)	125
BmsI	GCATC	1 cut(s)	94
BmuI	ACTGGG	1 cut(s)	125
BpuEI	CTTGAG	1 cut(s)	182
BpuMI	CCSGG	1 cut(s)	52
BsaJI	CCNNGG	1 cut(s)	177
Bsc4I	CCNNNNNNNGG	2 cut(s)	135, 183
Bse118I	RCCGGY	1 cut(s)	273
Bse1I	ACTGG	1 cut(s)	131
Bse21I	CCTNAGG	1 cut(s)	87
Bse3DI	GCAATG	1 cut(s)	114
BseDI	CCNNGG	1 cut(s)	177
BseGI	GGATG	1 cut(s)	192
BseLI	CCNNNNNNNGG	2 cut(s)	135, 183
BseMI	GCAATG	1 cut(s)	114
BseMII	CTCAG	1 cut(s)	101
BseNI	ACTGG	1 cut(s)	131
BseXI	GCAGC	2 cut(s)	214, 259
BshFI	GGCC	2 cut(s)	175, 273
BshNI	GGYRCC	1 cut(s)	285
BsiSI	CCGG	2 cut(s)	52, 274
BslI	CCNNNNNNNGG	2 cut(s)	135, 183
BsnI	GGCC	2 cut(s)	175, 273
BspANI	GGCC	2 cut(s)	175, 273
BspCNI	CTCAG	1 cut(s)	100
BspHI	TCATGA	1 cut(s)	72
BspLI	GGNNCC	1 cut(s)	287
BspT107I	GGYRCC	1 cut(s)	285
BspTI	CTTAAG	1 cut(s)	208
BsrDI	GCAATG	1 cut(s)	114
BsrFI	RCCGGY	1 cut(s)	273
BsrI	ACTGG	1 cut(s)	131
BssAI	RCCGGY	1 cut(s)	273
BssECI	CCNNGG	1 cut(s)	177
BssT1I	CCWWGG	1 cut(s)	177
BstAFI	CTTAAG	1 cut(s)	208
BstC8I	GCNNGC	1 cut(s)	114
BstDEI	CTNAG	2 cut(s)	87, 318
BstF5I	GGATG	1 cut(s)	192
BstMWI	GCNNNNNNNGC	4 cut(s)	113, 172, 202, 294
BstNSI	RCATGY	2 cut(s)	85, 149
BstSCI	CCNGG	1 cut(s)	50
BstV1I	GCAGC	2 cut(s)	214, 259
Bsu36I	CCTNAGG	1 cut(s)	87
BsuRI	GGCC	2 cut(s)	175, 273
BtsCI	GGATG	1 cut(s)	192
Cac8I	GCNNGC	1 cut(s)	114
CciI	TCATGA	1 cut(s)	72
Cfr10I	RCCGGY	1 cut(s)	273
Cfr13I	GGNCC	1 cut(s)	174
Csp6I	GTAC	1 cut(s)	218
CviAII	CATG	3 cut(s)	73, 82, 146
CviJI	RGCY	8 cut(s)	95, 160, 175, 196, 250, 273, 315, 322
CviKI_1	RGCY	8 cut(s)	95, 160, 175, 196, 250, 273, 315, 322
CviQI	GTAC	1 cut(s)	218
DdeI	CTNAG	2 cut(s)	87, 318
Eco130I	CCWWGG	1 cut(s)	177
Eco57I	CTGAAG	1 cut(s)	139
Eco81I	CCTNAGG	1 cut(s)	87
EcoT14I	CCWWGG	1 cut(s)	177
ErhI	CCWWGG	1 cut(s)	177
FaeI	CATG	3 cut(s)	76, 85, 149
FaiI	YATR	7 cut(s)	74, 83, 98, 147, 223, 326, 328
FalI	AAGNNNNNCTT	2 cut(s)	191, 223
FatI	CATG	3 cut(s)	72, 81, 145
Fnu4HI	GCNGC	2 cut(s)	203, 248
FokI	GGATG	1 cut(s)	199
Fsp4HI	GCNGC	2 cut(s)	203, 248
FspBI	CTAG	2 cut(s)	269, 290
GluI	GCNGC	2 cut(s)	203, 248
HaeIII	GGCC	2 cut(s)	175, 273
HapII	CCGG	2 cut(s)	52, 274
Hin1II	CATG	3 cut(s)	76, 85, 149
HincII	GTYRAC	1 cut(s)	279
HindII	GTYRAC	1 cut(s)	279
HinfI	GANTC	1 cut(s)	229
HpaII	CCGG	2 cut(s)	52, 274
HphI	GGTGA	1 cut(s)	202
Hpy166II	GTNNAC	1 cut(s)	279
Hpy188III	TCNNGA	2 cut(s)	73, 89
Hpy8I	GTNNAC	1 cut(s)	279
HpyCH4V	TGCA	4 cut(s)	4, 107, 112, 145
HpyF10VI	GCNNNNNNNGC	4 cut(s)	113, 172, 202, 294
HpyF3I	CTNAG	2 cut(s)	87, 318
Hsp92II	CATG	3 cut(s)	76, 85, 149
LmnI	GCTCC	1 cut(s)	239
LpnPI	CCDG	6 cut(s)	65, 74, 142, 144, 236, 287
Lsp1109I	GCAGC	2 cut(s)	214, 259
LweI	GCATC	1 cut(s)	94
MaeI	CTAG	2 cut(s)	269, 290
MaeIII	GTNAC	1 cut(s)	77
MboII	GAAGA	1 cut(s)	145
MmeI	TCCRAC	1 cut(s)	62
MnlI	CCTC	2 cut(s)	96, 207
MseI	TTAA	1 cut(s)	209
MslI	CAYNNNNRTG	1 cut(s)	144
MspA1I	CMGCKG	1 cut(s)	250
MspCI	CTTAAG	1 cut(s)	208
MspI	CCGG	2 cut(s)	52, 274
MspR9I	CCNGG	1 cut(s)	52
MwoI	GCNNNNNNNGC	4 cut(s)	113, 172, 202, 294
NciI	CCSGG	1 cut(s)	52
NlaIII	CATG	3 cut(s)	76, 85, 149
NlaIV	GGNNCC	1 cut(s)	287
NmuCI	GTSAC	1 cut(s)	77
NspI	RCATGY	2 cut(s)	85, 149
PagI	TCATGA	1 cut(s)	72
PfeI	GAWTC	1 cut(s)	229
PkrI	GCNGC	2 cut(s)	204, 249
PspN4I	GGNNCC	1 cut(s)	287
PspPI	GGNCC	1 cut(s)	174
PvuII	CAGCTG	1 cut(s)	250
RsaI	GTAC	1 cut(s)	219
RsaNI	GTAC	1 cut(s)	218
RseI	CAYNNNNRTG	1 cut(s)	144
SaqAI	TTAA	1 cut(s)	209
SatI	GCNGC	2 cut(s)	203, 248
Sau96I	GGNCC	1 cut(s)	174
ScrFI	CCNGG	1 cut(s)	52
SetI	ASST	5 cut(s)	97, 198, 252, 287, 324
SfaNI	GCATC	1 cut(s)	94
SmiMI	CAYNNNNRTG	1 cut(s)	144
SmlI	CTYRAG	2 cut(s)	197, 208
SmoI	CTYRAG	2 cut(s)	197, 208
SspMI	CTAG	2 cut(s)	269, 290
StyD4I	CCNGG	1 cut(s)	50
StyI	CCWWGG	1 cut(s)	177
TfiI	GAWTC	1 cut(s)	229
Tru1I	TTAA	1 cut(s)	209
Tru9I	TTAA	1 cut(s)	209
TseFI	GTSAC	1 cut(s)	77
TseI	GCWGC	2 cut(s)	202, 247
Tsp45I	GTSAC	1 cut(s)	77
Vha464I	CTTAAG	1 cut(s)	208
XceI	RCATGY	2 cut(s)	85, 149
XspI	CTAG	2 cut(s)	269, 290

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.