Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0004868

Physical Location & Seq

Genomic Coordinates Forward (+)

9256286 .. 9256612

Gene Structure 327 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g08310.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGACCAATAAAATGAACAAGCTGCTTTCTCTGCATTTGTTATTGTTGCTGACAGTTCTATTTCACTTGCAGTTCATTGGTGTTGGAAAGATGGGTTCTCCAACAATTTTTGCCCGGCGTAGTTTATCTTATCTCATGAGTGACAAGCCTCAGGAAGCTATAAACGATGCGATGCAAGCACAAGTAGTTTCCCTAGTTTGGCACATTGCATGTTATCTTCAGGTTGTTGCCCTTTCGACCCTTGGAATGGACAGTGAAGCTAAAGCAGCACTTAAGGAGGGTAGTATGCTTGAATCCAAAAGGAGCAAAGCAGCTGGACAGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009506 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009987 GO:0010033 GO:0014070 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0030054 GO:0032870 GO:0033993 GO:0036211 GO:0038023 GO:0042221 GO:0043170 GO:0043401 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048545 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0060089 GO:0065007 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

109

Amino Acids

11.86

Weight (kDa)

9.61

Isoelectric Point (pI)

61.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_BSK1_C	PF25575	22 - 74	9.5e-21	Serine/threonine-protein kinase BSK1-like, TPR repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004868)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g14100
malus_domestica	MD01G1056900.v1.1 MD14G1186200.v1.1 MD14G1186400.v1.1 MD14G1186600.v1.1
pyrus_communis	pycom01g08300 pycom01g08310 pycom01g08390 pycom01g08420 pycom01g08480 pycom01g08650 pycom01g08680 pycom01g08710 pycom02g23240
rosa_chinensis	RchiOBHm_Chr1g0324601 RchiOBHm_Chr1g0354681 RchiOBHm_Chr1g0354861
rosa_laevigata	RLG00000028186
rosa_multiflora	Rmu_sc0003940.1_g000003 Rmu_sc0006632.1_g000017
rosa_roxburghii	Rroxscaffold_4G00325320
rosa_rugosa	Rorug01G0244200 Rorug01G0244200 Rorug01G0244300
rosa_samantha	Rh1AG255200 Rh1AG256400 Rh1BG225700 Rh1CG239700
rosa_wichuraiana	Rw1G022330 Rw1G022370 Rw1G022400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	203
AfiI	CCNNNNNNNGG	2 cut(s)	198, 247
AflII	CTTAAG	1 cut(s)	272
AgsI	TTSAA	1 cut(s)	293
AluBI	AGCT	4 cut(s)	22, 158, 260, 314
AluI	AGCT	4 cut(s)	22, 158, 260, 314
ApeKI	GCWGC	3 cut(s)	22, 266, 311
AsuC2I	CCSGG	1 cut(s)	115
AxyI	CCTNAGG	1 cut(s)	150
BbvI	GCAGC	3 cut(s)	9, 278, 323
BccI	CCATC	1 cut(s)	85
BcnI	CCSGG	1 cut(s)	115
BfaI	CTAG	1 cut(s)	194
BfrI	CTTAAG	1 cut(s)	272
BisI	GCNGC	3 cut(s)	23, 267, 312
BlsI	GCNGC	3 cut(s)	24, 268, 313
Bme1390I	CCNGG	1 cut(s)	115
BmrFI	CCNGG	1 cut(s)	115
BmsI	GCATC	2 cut(s)	157, 162
BpuMI	CCSGG	1 cut(s)	115
BsaJI	CCNNGG	1 cut(s)	241
Bsc4I	CCNNNNNNNGG	2 cut(s)	198, 247
Bse21I	CCTNAGG	1 cut(s)	150
Bse3DI	GCAATG	1 cut(s)	204
BseDI	CCNNGG	1 cut(s)	241
BseLI	CCNNNNNNNGG	2 cut(s)	198, 247
BseMI	GCAATG	1 cut(s)	204
BseMII	CTCAG	1 cut(s)	164
BseXI	GCAGC	3 cut(s)	9, 278, 323
BsiSI	CCGG	1 cut(s)	115
BslI	CCNNNNNNNGG	2 cut(s)	198, 247
BspCNI	CTCAG	1 cut(s)	163
BspHI	TCATGA	1 cut(s)	135
BspTI	CTTAAG	1 cut(s)	272
BsrDI	GCAATG	1 cut(s)	204
BssECI	CCNNGG	1 cut(s)	241
BssT1I	CCWWGG	1 cut(s)	241
Bst4CI	ACNGT	2 cut(s)	55, 254
BstAFI	CTTAAG	1 cut(s)	272
BstC8I	GCNNGC	1 cut(s)	177
BstDEI	CTNAG	1 cut(s)	150
BstMWI	GCNNNNNNNGC	3 cut(s)	31, 176, 266
BstNSI	RCATGY	1 cut(s)	213
BstSCI	CCNGG	1 cut(s)	113
BstV1I	GCAGC	3 cut(s)	9, 278, 323
Bsu36I	CCTNAGG	1 cut(s)	150
BtgZI	GCGATG	1 cut(s)	185
BtsIMutI	CAGTG	1 cut(s)	259
Cac8I	GCNNGC	1 cut(s)	177
CciI	TCATGA	1 cut(s)	135
CviAII	CATG	2 cut(s)	136, 210
CviJI	RGCY	5 cut(s)	22, 148, 158, 260, 314
CviKI_1	RGCY	5 cut(s)	22, 148, 158, 260, 314
DdeI	CTNAG	1 cut(s)	150
Eco130I	CCWWGG	1 cut(s)	241
Eco57I	CTGAAG	1 cut(s)	203
Eco81I	CCTNAGG	1 cut(s)	150
EcoT14I	CCWWGG	1 cut(s)	241
ErhI	CCWWGG	1 cut(s)	241
FaeI	CATG	2 cut(s)	139, 213
FaiI	YATR	4 cut(s)	137, 161, 211, 287
FalI	AAGNNNNNCTT	2 cut(s)	255, 287
FatI	CATG	2 cut(s)	135, 209
Fnu4HI	GCNGC	3 cut(s)	23, 267, 312
Fsp4HI	GCNGC	3 cut(s)	23, 267, 312
FspBI	CTAG	1 cut(s)	194
GluI	GCNGC	3 cut(s)	23, 267, 312
HapII	CCGG	1 cut(s)	115
Hin1II	CATG	2 cut(s)	139, 213
HinfI	GANTC	1 cut(s)	293
HpaII	CCGG	1 cut(s)	115
Hpy188III	TCNNGA	2 cut(s)	136, 152
HpyCH4III	ACNGT	2 cut(s)	55, 254
HpyCH4V	TGCA	4 cut(s)	34, 70, 175, 209
HpyF10VI	GCNNNNNNNGC	3 cut(s)	31, 176, 266
HpyF3I	CTNAG	1 cut(s)	150
Hsp92II	CATG	2 cut(s)	139, 213
LmnI	GCTCC	1 cut(s)	303
LpnPI	CCDG	4 cut(s)	128, 137, 206, 300
Lsp1109I	GCAGC	3 cut(s)	9, 278, 323
LweI	GCATC	2 cut(s)	157, 162
MaeI	CTAG	1 cut(s)	194
MaeIII	GTNAC	1 cut(s)	140
MboII	GAAGA	1 cut(s)	209
MluCI	AATT	1 cut(s)	105
MmeI	TCCRAC	2 cut(s)	64, 125
MnlI	CCTC	2 cut(s)	159, 271
MseI	TTAA	1 cut(s)	273
MspA1I	CMGCKG	1 cut(s)	314
MspCI	CTTAAG	1 cut(s)	272
MspI	CCGG	1 cut(s)	115
MspR9I	CCNGG	1 cut(s)	115
MwoI	GCNNNNNNNGC	3 cut(s)	31, 176, 266
NciI	CCSGG	1 cut(s)	115
NlaIII	CATG	2 cut(s)	139, 213
NmuCI	GTSAC	1 cut(s)	140
NspI	RCATGY	1 cut(s)	213
PagI	TCATGA	1 cut(s)	135
PfeI	GAWTC	1 cut(s)	293
PkrI	GCNGC	3 cut(s)	24, 268, 313
PvuII	CAGCTG	1 cut(s)	314
SaqAI	TTAA	1 cut(s)	273
SatI	GCNGC	3 cut(s)	23, 267, 312
ScrFI	CCNGG	1 cut(s)	115
SetI	ASST	5 cut(s)	24, 160, 225, 262, 316
SfaNI	GCATC	2 cut(s)	157, 162
SmlI	CTYRAG	1 cut(s)	272
SmoI	CTYRAG	1 cut(s)	272
Sse9I	AATT	1 cut(s)	105
SspMI	CTAG	1 cut(s)	194
StyD4I	CCNGG	1 cut(s)	113
StyI	CCWWGG	1 cut(s)	241
TaaI	ACNGT	2 cut(s)	55, 254
TaqI	TCGA	1 cut(s)	236
TasI	AATT	1 cut(s)	105
TfiI	GAWTC	1 cut(s)	293
Tru1I	TTAA	1 cut(s)	273
Tru9I	TTAA	1 cut(s)	273
TscAI	CASTG	1 cut(s)	259
TseFI	GTSAC	1 cut(s)	140
TseI	GCWGC	3 cut(s)	22, 266, 311
Tsp45I	GTSAC	1 cut(s)	140
TspDTI	ATGAA	2 cut(s)	29, 64
TspRI	CASTG	1 cut(s)	259
Vha464I	CTTAAG	1 cut(s)	272
XceI	RCATGY	1 cut(s)	213
XspI	CTAG	1 cut(s)	194

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.