Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003940.1

Orthogroup ID

OG0004868

Physical Location & Seq

Genomic Coordinates Forward (+)

20051 .. 23577

Gene Structure 3527 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003940.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

atgctagttaggaaagtggttgggcttgatgagatgaagaggagcagcctgggcctgacaccattggcggtggtcagctgcggctctgccctaactccggcggccctttttcggccacctccgggggtcaagagaaccaagacgatgatcgggctgcttagagtggtggcatttgagttacagctttattgtgaggttgttatgctcattgagcttacatttaaatttggagagagtgtgttagtctcatctctcgccactcaccgacgctgcccaaaaccagtctcatctttcttttcctctcatgaatcaggaaccatcatcattgtcacctctgattattatcatgggttgaggaaggagtatctagaaggtgtttattttggtctatgcgtatgcgatggtcagttctttgatgttggaaacatgttttctcccacattttttgtccatcgtagtttgtcttatctcatggatgagatgcctcaggaagctttaaacgatgcaatgcaagctcaagtaatttccccaatatggcacattgcatcttatctacaggtcgctgccctttctgcactcggaatggagactgaggcgcaatcagcactgaaggagggtactgtgcttgaaaccaaaaggaacactgcagctggacacaagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009506 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009987 GO:0010033 GO:0014070 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0030054 GO:0032870 GO:0033993 GO:0036211 GO:0038023 GO:0042221 GO:0043170 GO:0043401 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048545 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0060089 GO:0065007 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

220

Amino Acids

24.23

Weight (kDa)

7.0

Isoelectric Point (pI)

50.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004868)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g14100
malus_domestica	MD01G1056900.v1.1 MD14G1186200.v1.1 MD14G1186400.v1.1 MD14G1186600.v1.1
pyrus_communis	pycom01g08300 pycom01g08310 pycom01g08390 pycom01g08420 pycom01g08480 pycom01g08650 pycom01g08680 pycom01g08710 pycom02g23240
rosa_chinensis	RchiOBHm_Chr1g0324601 RchiOBHm_Chr1g0354681 RchiOBHm_Chr1g0354861
rosa_laevigata	RLG00000028186
rosa_multiflora	Rmu_sc0003940.1_g000003 Rmu_sc0006632.1_g000017
rosa_roxburghii	Rroxscaffold_4G00325320
rosa_rugosa	Rorug01G0244200 Rorug01G0244200 Rorug01G0244300
rosa_samantha	Rh1AG255200 Rh1AG256400 Rh1BG225700 Rh1CG239700
rosa_wichuraiana	Rw1G022330 Rw1G022370 Rw1G022400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	68, 81, 101
AcoI	YGGCCR	1 cut(s)	113
AcsI	RAATTY	1 cut(s)	224
AcuI	CTGAAG	1 cut(s)	629
AfaI	GTAC	1 cut(s)	619
AfiI	CCNNNNNNNGG	4 cut(s)	97, 111, 122, 534
AflIII	ACRYGT	1 cut(s)	426
AgsI	TTSAA	1 cut(s)	629
AjnI	CCWGG	1 cut(s)	48
AluBI	AGCT	6 cut(s)	78, 184, 214, 494, 515, 650
AluI	AGCT	6 cut(s)	78, 184, 214, 494, 515, 650
Alw26I	GTCTC	3 cut(s)	250, 289, 581
AoxI	GGCC	3 cut(s)	52, 102, 113
ApeKI	GCWGC	6 cut(s)	45, 78, 154, 270, 563, 647
ApoI	RAATTY	1 cut(s)	224
AspLEI	GCGC	1 cut(s)	598
AspS9I	GGNCC	2 cut(s)	52, 103
AsuC2I	CCSGG	1 cut(s)	123
AsuHPI	GGTGA	2 cut(s)	254, 322
AxyI	CCTNAGG	1 cut(s)	486
BbvI	GCAGC	6 cut(s)	57, 65, 141, 257, 550, 659
BccI	CCATC	3 cut(s)	326, 395, 459
BciT130I	CCWGG	1 cut(s)	50
BcnI	CCSGG	1 cut(s)	123
BcoDI	GTCTC	3 cut(s)	250, 289, 581
BfaI	CTAG	2 cut(s)	5, 368
BfmI	CTRYAG	2 cut(s)	554, 645
BisI	GCNGC	8 cut(s)	46, 79, 82, 102, 155, 271, 564, 648
BlsI	GCNGC	8 cut(s)	47, 80, 83, 103, 156, 272, 565, 649
Bme1390I	CCNGG	2 cut(s)	50, 123
BmgT120I	GGNCC	2 cut(s)	52, 103
BmiI	GGNNCC	1 cut(s)	316
BmrFI	CCNGG	2 cut(s)	50, 123
BmsI	GCATC	3 cut(s)	471, 493, 554
BpuEI	CTTGAG	1 cut(s)	501
BpuMI	CCSGG	1 cut(s)	123
BsaBI	GATNNNNATC	1 cut(s)	342
BsaJI	CCNNGG	2 cut(s)	49, 122
BsaXI	ACNNNNNCTCC	2 cut(s)	222, 252
Bsc4I	CCNNNNNNNGG	4 cut(s)	97, 111, 122, 534
Bse1I	ACTGG	1 cut(s)	281
Bse21I	CCTNAGG	1 cut(s)	486
Bse3DI	GCAATG	2 cut(s)	513, 540
Bse8I	GATNNNNATC	1 cut(s)	342
BseBI	CCWGG	1 cut(s)	50
BseDI	CCNNGG	2 cut(s)	49, 122
BseGI	GGATG	1 cut(s)	481
BseJI	GATNNNNATC	1 cut(s)	342
BseLI	CCNNNNNNNGG	4 cut(s)	97, 111, 122, 534
BseMI	GCAATG	2 cut(s)	513, 540
BseMII	CTCAG	2 cut(s)	500, 582
BseNI	ACTGG	1 cut(s)	281
BseRI	GAGGAG	1 cut(s)	55
BseXI	GCAGC	6 cut(s)	57, 65, 141, 257, 550, 659
BsgI	GTGCAG	1 cut(s)	558
BshFI	GGCC	3 cut(s)	54, 104, 115
BsiSI	CCGG	2 cut(s)	98, 122
BslI	CCNNNNNNNGG	4 cut(s)	97, 111, 122, 534
BsmAI	GTCTC	3 cut(s)	250, 289, 581
BsnI	GGCC	3 cut(s)	54, 104, 115
Bsp143I	GATC	1 cut(s)	147
BspACI	CCGC	3 cut(s)	68, 81, 101
BspANI	GGCC	3 cut(s)	54, 104, 115
BspCNI	CTCAG	2 cut(s)	499, 583
BspHI	TCATGA	1 cut(s)	304
BspLI	GGNNCC	1 cut(s)	316
BspMAI	CTGCAG	1 cut(s)	649
BsrDI	GCAATG	2 cut(s)	513, 540
BsrI	ACTGG	1 cut(s)	281
BssECI	CCNNGG	2 cut(s)	49, 122
BssMI	GATC	1 cut(s)	147
Bst2UI	CCWGG	1 cut(s)	50
Bst4CI	ACNGT	1 cut(s)	622
Bst6I	CTCTTC	1 cut(s)	32
BstC8I	GCNNGC	1 cut(s)	513
BstDEI	CTNAG	3 cut(s)	158, 486, 591
BstF5I	GGATG	1 cut(s)	481
BstHHI	GCGC	1 cut(s)	598
BstKTI	GATC	1 cut(s)	150
BstMAI	GTCTC	3 cut(s)	250, 289, 581
BstMBI	GATC	1 cut(s)	147
BstMWI	GCNNNNNNNGC	5 cut(s)	51, 211, 512, 572, 602
BstNI	CCWGG	1 cut(s)	50
BstNSI	RCATGY	1 cut(s)	430
BstSCI	CCNGG	2 cut(s)	48, 121
BstSFI	CTRYAG	2 cut(s)	554, 645
BstV1I	GCAGC	6 cut(s)	57, 65, 141, 257, 550, 659
Bsu36I	CCTNAGG	1 cut(s)	486
BsuRI	GGCC	3 cut(s)	54, 104, 115
BtgZI	GCGATG	1 cut(s)	414
BtsCI	GGATG	1 cut(s)	481
BtsI	GCAGTG	1 cut(s)	642
BtsIMutI	CAGTG	2 cut(s)	605, 642
Cac8I	GCNNGC	1 cut(s)	513
CciI	TCATGA	1 cut(s)	304
CfoI	GCGC	1 cut(s)	598
Cfr13I	GGNCC	2 cut(s)	52, 103
CseI	GACGC	1 cut(s)	276
Csp6I	GTAC	1 cut(s)	618
CspCI	CAANNNNNGTGG	2 cut(s)	427, 462
CviAII	CATG	4 cut(s)	305, 347, 427, 472
CviQI	GTAC	1 cut(s)	618
DdeI	CTNAG	3 cut(s)	158, 486, 591
DpnI	GATC	1 cut(s)	149
DpnII	GATC	1 cut(s)	147
DraI	TTTAAA	2 cut(s)	223, 498
EaeI	YGGCCR	1 cut(s)	113
Eam1104I	CTCTTC	1 cut(s)	32
EarI	CTCTTC	1 cut(s)	32
Eco57I	CTGAAG	1 cut(s)	629
Eco81I	CCTNAGG	1 cut(s)	486
EcoRII	CCWGG	1 cut(s)	48
FaeI	CATG	4 cut(s)	308, 350, 430, 475
FaiI	YATR	8 cut(s)	203, 306, 348, 391, 397, 428, 473, 535
FatI	CATG	4 cut(s)	304, 346, 426, 471
Fnu4HI	GCNGC	8 cut(s)	46, 79, 82, 102, 155, 271, 564, 648
FokI	GGATG	1 cut(s)	488
Fsp4HI	GCNGC	8 cut(s)	46, 79, 82, 102, 155, 271, 564, 648
FspBI	CTAG	2 cut(s)	5, 368
GlaI	GCGC	1 cut(s)	597
GluI	GCNGC	8 cut(s)	46, 79, 82, 102, 155, 271, 564, 648
HaeIII	GGCC	3 cut(s)	54, 104, 115
HapII	CCGG	2 cut(s)	98, 122
HgaI	GACGC	1 cut(s)	276
HhaI	GCGC	1 cut(s)	598
Hin1II	CATG	4 cut(s)	308, 350, 430, 475
Hin6I	GCGC	1 cut(s)	596
HinP1I	GCGC	1 cut(s)	596
HindIII	AAGCTT	1 cut(s)	492
HinfI	GANTC	1 cut(s)	308
HpaII	CCGG	2 cut(s)	98, 122
HphI	GGTGA	2 cut(s)	254, 322
Hpy188I	TCNGA	2 cut(s)	337, 581
Hpy188III	TCNNGA	5 cut(s)	130, 305, 312, 368, 488
Hpy99I	CGWCG	1 cut(s)	270
HpyAV	CCTTC	3 cut(s)	352, 365, 604
HpyCH4III	ACNGT	1 cut(s)	622
HpyCH4V	TGCA	5 cut(s)	506, 511, 545, 575, 647
HpyF10VI	GCNNNNNNNGC	5 cut(s)	51, 211, 512, 572, 602
HpyF3I	CTNAG	3 cut(s)	158, 486, 591
Hsp92II	CATG	4 cut(s)	308, 350, 430, 475
HspAI	GCGC	1 cut(s)	596
Kzo9I	GATC	1 cut(s)	147
LmnI	GCTCC	1 cut(s)	42
Lsp1109I	GCAGC	6 cut(s)	57, 65, 141, 257, 550, 659
LweI	GCATC	3 cut(s)	471, 493, 554
MaeI	CTAG	2 cut(s)	5, 368
MaeIII	GTNAC	2 cut(s)	177, 328
MalI	GATC	1 cut(s)	149
MboI	GATC	1 cut(s)	147
MboII	GAAGA	1 cut(s)	49
MluCI	AATT	2 cut(s)	224, 522
MmeI	TCCRAC	1 cut(s)	400
MnlI	CCTC	9 cut(s)	33, 129, 187, 310, 343, 348, 495, 586, 607
MseI	TTAA	2 cut(s)	222, 497
MspA1I	CMGCKG	2 cut(s)	78, 650
MspI	CCGG	2 cut(s)	98, 122
MspR9I	CCNGG	2 cut(s)	50, 123
MvaI	CCWGG	1 cut(s)	50
MwoI	GCNNNNNNNGC	5 cut(s)	51, 211, 512, 572, 602
NciI	CCSGG	1 cut(s)	123
NdeII	GATC	1 cut(s)	147
NlaIII	CATG	4 cut(s)	308, 350, 430, 475
NlaIV	GGNNCC	1 cut(s)	316
NmuCI	GTSAC	1 cut(s)	328
NspI	RCATGY	1 cut(s)	430
PagI	TCATGA	1 cut(s)	304
PciI	ACATGT	1 cut(s)	426
PfeI	GAWTC	1 cut(s)	308
PkrI	GCNGC	8 cut(s)	47, 80, 83, 103, 156, 272, 565, 649
PscI	ACATGT	1 cut(s)	426
Psp6I	CCWGG	1 cut(s)	48
PspGI	CCWGG	1 cut(s)	48
PspN4I	GGNNCC	1 cut(s)	316
PspPI	GGNCC	2 cut(s)	52, 103
PstI	CTGCAG	1 cut(s)	649
PvuII	CAGCTG	2 cut(s)	78, 650
RsaI	GTAC	1 cut(s)	619
RsaNI	GTAC	1 cut(s)	618
SaqAI	TTAA	2 cut(s)	222, 497
SatI	GCNGC	8 cut(s)	46, 79, 82, 102, 155, 271, 564, 648
Sau3AI	GATC	1 cut(s)	147
Sau96I	GGNCC	2 cut(s)	52, 103
ScrFI	CCNGG	2 cut(s)	50, 123
SfaNI	GCATC	3 cut(s)	471, 493, 554
SfcI	CTRYAG	2 cut(s)	554, 645
SmiI	ATTTAAAT	1 cut(s)	223
SmlI	CTYRAG	1 cut(s)	516
SmoI	CTYRAG	1 cut(s)	516
Sse9I	AATT	2 cut(s)	224, 522
SsiI	CCGC	3 cut(s)	68, 81, 101
SspMI	CTAG	2 cut(s)	5, 368
StyD4I	CCNGG	2 cut(s)	48, 121
SwaI	ATTTAAAT	1 cut(s)	223
TaaI	ACNGT	1 cut(s)	622
TasI	AATT	2 cut(s)	224, 522
TauI	GCSGC	2 cut(s)	84, 104
TfiI	GAWTC	1 cut(s)	308
Tru1I	TTAA	2 cut(s)	222, 497
Tru9I	TTAA	2 cut(s)	222, 497
TscAI	CASTG	2 cut(s)	612, 649
TseFI	GTSAC	1 cut(s)	328
TseI	GCWGC	6 cut(s)	45, 78, 154, 270, 563, 647
Tsp45I	GTSAC	1 cut(s)	328
TspDTI	ATGAA	2 cut(s)	50, 321
TspRI	CASTG	2 cut(s)	612, 649
XapI	RAATTY	1 cut(s)	224
XbaI	TCTAGA	1 cut(s)	367
XceI	RCATGY	1 cut(s)	430
XspI	CTAG	2 cut(s)	5, 368

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.