Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0004868

Physical Location & Seq

Genomic Coordinates Forward (+)

27871188 .. 27879872

Gene Structure 8685 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1186400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGAGTGACAAGCCTCAGGAACCTCTCAACGATGCAATGCAAGCACAAGTAGTTTCCCCAGTTTGGCACCTTGTATCTTATCTTCAGGGTGCTGCCCTTTCGGCCATTCAGATGCTGACAGATTCTTGCTTGGAAGGACAACTTTCTAATGATGATGAGCGACCAAATCCAAAGTCATTAGTTGCTTCTTTGACTCCTCTTCAGAAAGAGACTGAGGTTCCTTCTTTTGTTTTGATGGGTATCCCACATGGTACCTTCTGGTCTTCTCTTTCACAACTCGGTGATGCCTGCTCAAGAAGGGATTTGACCACTATACATGAGATCCTAGAGAATATCGGCTATAAAGACGATGGAATGACAAATGAGTGCTCGTTCAAATGTGGACTGACCAAATGCAGGAATCATAAGATTCAAAGAAAAGGGGGGATTCTGCTTTTAAGCACTAGGACATCAGAATCACAATTGAGTGTCATTCACAGTGTGCAGTTCATTGGAGTTGGAACAATGGTTTCTCTAACAATTTTTGACCGGCGTAGTTTGTCTTATCTCATGAGTGACAAGCCCCAGGAAGCTATAAAAGATGCAATGCAAGCACAAGTAGTTTCCCCAGTTTGGCACATTGCATGTTATCTTCAAGCTGTTGCCCTTTCGGCCCTTGGAATGGATGGTGAAATTGAAGCAGGACTTAAGGAGGGTACTATGCTTGAATCCAAAATGAGCAAAGCAGCTGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009506 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009987 GO:0010033 GO:0014070 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0030054 GO:0032870 GO:0033993 GO:0036211 GO:0038023 GO:0042221 GO:0043170 GO:0043401 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048545 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0060089 GO:0065007 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

245

Amino Acids

26.62

Weight (kDa)

5.51

Isoelectric Point (pI)

58.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_BSK1_C	PF25575	1 - 29	1.8e-06	Serine/threonine-protein kinase BSK1-like, TPR repeats
TPR_BSK1_C	PF25575	95 - 213	2.6e-35	Serine/threonine-protein kinase BSK1-like, TPR repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004868)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g14100
malus_domestica	MD01G1056900.v1.1 MD14G1186200.v1.1 MD14G1186400.v1.1 MD14G1186600.v1.1
pyrus_communis	pycom01g08300 pycom01g08310 pycom01g08390 pycom01g08420 pycom01g08480 pycom01g08650 pycom01g08680 pycom01g08710 pycom02g23240
rosa_chinensis	RchiOBHm_Chr1g0324601 RchiOBHm_Chr1g0354681 RchiOBHm_Chr1g0354861
rosa_laevigata	RLG00000028186
rosa_multiflora	Rmu_sc0003940.1_g000003 Rmu_sc0006632.1_g000017
rosa_roxburghii	Rroxscaffold_4G00325320
rosa_rugosa	Rorug01G0244200 Rorug01G0244200 Rorug01G0244300
rosa_samantha	Rh1AG255200 Rh1AG256400 Rh1BG225700 Rh1CG239700
rosa_wichuraiana	Rw1G022330 Rw1G022370 Rw1G022400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	251
AccB1I	GGYRCC	2 cut(s)	66, 251
AclWI	GGATC	1 cut(s)	316
AcoI	YGGCCR	1 cut(s)	102
AcuI	CTGAAG	2 cut(s)	68, 185
AdeI	CACNNNGTG	1 cut(s)	481
AfaI	GTAC	2 cut(s)	253, 697
AfiI	CCNNNNNNNGG	4 cut(s)	63, 396, 612, 661
AflII	CTTAAG	1 cut(s)	686
AgsI	TTSAA	5 cut(s)	376, 413, 635, 677, 707
AjnI	CCWGG	1 cut(s)	564
AluBI	AGCT	3 cut(s)	572, 638, 728
AluI	AGCT	3 cut(s)	572, 638, 728
Alw21I	GWGCWC	1 cut(s)	371
Alw26I	GTCTC	1 cut(s)	203
AlwI	GGATC	1 cut(s)	316
AlwNI	CAGNNNCTG	1 cut(s)	115
AoxI	GGCC	2 cut(s)	102, 651
ApeKI	GCWGC	2 cut(s)	92, 725
ArsI	GACNNNNNNTTYG	2 cut(s)	158, 190
Asp718I	GGTACC	1 cut(s)	251
AspS9I	GGNCC	1 cut(s)	652
AsuHPI	GGTGA	2 cut(s)	293, 680
AxyI	CCTNAGG	1 cut(s)	15
BanI	GGYRCC	2 cut(s)	66, 251
BarI	GAAGNNNNNNTAC	2 cut(s)	66, 98
BbsI	GAAGAC	1 cut(s)	255
Bbv12I	GWGCWC	1 cut(s)	371
BbvI	GCAGC	1 cut(s)	79
BccI	CCATC	3 cut(s)	229, 344, 659
BciT130I	CCWGG	1 cut(s)	566
BciVI	GTATCC	1 cut(s)	251
BcoDI	GTCTC	1 cut(s)	203
BfaI	CTAG	2 cut(s)	326, 444
BfrI	CTTAAG	1 cut(s)	686
BfuI	GTATCC	1 cut(s)	251
BglI	GCCNNNNNGGC	2 cut(s)	101, 650
BisI	GCNGC	2 cut(s)	93, 726
BlsI	GCNGC	2 cut(s)	94, 727
Bme1390I	CCNGG	1 cut(s)	566
BmgT120I	GGNCC	1 cut(s)	652
BmiI	GGNNCC	4 cut(s)	21, 68, 219, 253
BmrFI	CCNGG	1 cut(s)	566
BmrI	ACTGGG	2 cut(s)	53, 602
BmsI	GCATC	4 cut(s)	22, 102, 274, 571
BmuI	ACTGGG	2 cut(s)	53, 602
BpiI	GAAGAC	1 cut(s)	255
BpuEI	CTTGAG	1 cut(s)	277
BsaBI	GATNNNNATC	1 cut(s)	239
BsaJI	CCNNGG	2 cut(s)	564, 655
Bsc4I	CCNNNNNNNGG	4 cut(s)	63, 396, 612, 661
Bse118I	RCCGGY	1 cut(s)	528
Bse1I	ACTGG	2 cut(s)	59, 608
Bse21I	CCTNAGG	1 cut(s)	15
Bse3DI	GCAATG	3 cut(s)	42, 591, 618
Bse8I	GATNNNNATC	1 cut(s)	239
BseBI	CCWGG	1 cut(s)	566
BseDI	CCNNGG	2 cut(s)	564, 655
BseGI	GGATG	1 cut(s)	670
BseJI	GATNNNNATC	1 cut(s)	239
BseLI	CCNNNNNNNGG	4 cut(s)	63, 396, 612, 661
BseMI	GCAATG	3 cut(s)	42, 591, 618
BseMII	CTCAG	2 cut(s)	29, 204
BseNI	ACTGG	2 cut(s)	59, 608
BseRI	GAGGAG	1 cut(s)	186
BseXI	GCAGC	1 cut(s)	79
BsgI	GTGCAG	1 cut(s)	503
BshFI	GGCC	2 cut(s)	104, 653
BshNI	GGYRCC	2 cut(s)	66, 251
BsiHKAI	GWGCWC	1 cut(s)	371
BsiSI	CCGG	1 cut(s)	529
BslI	CCNNNNNNNGG	4 cut(s)	63, 396, 612, 661
BsmAI	GTCTC	1 cut(s)	203
BsnI	GGCC	2 cut(s)	104, 653
Bsp1286I	GDGCHC	1 cut(s)	371
Bsp143I	GATC	1 cut(s)	321
BspANI	GGCC	2 cut(s)	104, 653
BspCNI	CTCAG	2 cut(s)	28, 205
BspHI	TCATGA	1 cut(s)	549
BspLI	GGNNCC	4 cut(s)	21, 68, 219, 253
BspPI	GGATC	1 cut(s)	316
BspT107I	GGYRCC	2 cut(s)	66, 251
BspTI	CTTAAG	1 cut(s)	686
BsrDI	GCAATG	3 cut(s)	42, 591, 618
BsrFI	RCCGGY	1 cut(s)	528
BsrI	ACTGG	2 cut(s)	59, 608
BssAI	RCCGGY	1 cut(s)	528
BssECI	CCNNGG	2 cut(s)	564, 655
BssMI	GATC	1 cut(s)	321
BssT1I	CCWWGG	1 cut(s)	655
Bst2UI	CCWGG	1 cut(s)	566
Bst4CI	ACNGT	1 cut(s)	479
Bst6I	CTCTTC	1 cut(s)	204
BstAFI	CTTAAG	1 cut(s)	686
BstC8I	GCNNGC	3 cut(s)	42, 289, 591
BstDEI	CTNAG	2 cut(s)	15, 213
BstF5I	GGATG	1 cut(s)	670
BstKTI	GATC	1 cut(s)	324
BstMAI	GTCTC	1 cut(s)	203
BstMBI	GATC	1 cut(s)	321
BstMWI	GCNNNNNNNGC	4 cut(s)	41, 101, 590, 650
BstNI	CCWGG	1 cut(s)	566
BstNSI	RCATGY	1 cut(s)	627
BstSCI	CCNGG	1 cut(s)	564
BstV1I	GCAGC	1 cut(s)	79
BstV2I	GAAGAC	1 cut(s)	255
BstX2I	RGATCY	1 cut(s)	321
BstYI	RGATCY	1 cut(s)	321
Bsu36I	CCTNAGG	1 cut(s)	15
BsuI	GTATCC	1 cut(s)	251
BsuRI	GGCC	2 cut(s)	104, 653
BtsCI	GGATG	1 cut(s)	670
BtsIMutI	CAGTG	1 cut(s)	484
Cac8I	GCNNGC	3 cut(s)	42, 289, 591
CaiI	CAGNNNCTG	1 cut(s)	115
CciI	TCATGA	1 cut(s)	549
Cfr10I	RCCGGY	1 cut(s)	528
Cfr13I	GGNCC	1 cut(s)	652
Csp6I	GTAC	2 cut(s)	252, 696
CviAII	CATG	4 cut(s)	248, 317, 550, 624
CviJI	RGCY	8 cut(s)	13, 104, 339, 562, 572, 638, 653, 728
CviKI_1	RGCY	8 cut(s)	13, 104, 339, 562, 572, 638, 653, 728
CviQI	GTAC	2 cut(s)	252, 696
DdeI	CTNAG	2 cut(s)	15, 213
DpnI	GATC	1 cut(s)	323
DpnII	GATC	1 cut(s)	321
DraIII	CACNNNGTG	1 cut(s)	481
EaeI	YGGCCR	1 cut(s)	102
Eam1104I	CTCTTC	1 cut(s)	204
EarI	CTCTTC	1 cut(s)	204
Eco130I	CCWWGG	1 cut(s)	655
Eco57I	CTGAAG	2 cut(s)	68, 185
Eco81I	CCTNAGG	1 cut(s)	15
EcoRII	CCWGG	1 cut(s)	564
EcoT14I	CCWWGG	1 cut(s)	655
ErhI	CCWWGG	1 cut(s)	655
FaeI	CATG	4 cut(s)	251, 320, 553, 627
FaiI	YATR	9 cut(s)	249, 314, 318, 342, 405, 551, 575, 625, 701
FalI	AAGNNNNNCTT	4 cut(s)	126, 158, 669, 701
FatI	CATG	4 cut(s)	247, 316, 549, 623
Fnu4HI	GCNGC	2 cut(s)	93, 726
FokI	GGATG	1 cut(s)	677
Fsp4HI	GCNGC	2 cut(s)	93, 726
FspBI	CTAG	2 cut(s)	326, 444
GluI	GCNGC	2 cut(s)	93, 726
HaeIII	GGCC	2 cut(s)	104, 653
HapII	CCGG	1 cut(s)	529
Hin1II	CATG	4 cut(s)	251, 320, 553, 627
HinfI	GANTC	7 cut(s)	122, 193, 400, 409, 427, 455, 707
HpaII	CCGG	1 cut(s)	529
HphI	GGTGA	2 cut(s)	293, 680
Hpy166II	GTNNAC	1 cut(s)	383
Hpy188I	TCNGA	3 cut(s)	111, 204, 454
Hpy188III	TCNNGA	3 cut(s)	17, 294, 550
Hpy8I	GTNNAC	1 cut(s)	383
HpyAV	CCTTC	4 cut(s)	128, 231, 265, 291
HpyCH4III	ACNGT	1 cut(s)	479
HpyCH4V	TGCA	7 cut(s)	35, 40, 396, 484, 584, 589, 623
HpyF10VI	GCNNNNNNNGC	4 cut(s)	41, 101, 590, 650
HpyF3I	CTNAG	2 cut(s)	15, 213
Hsp92II	CATG	4 cut(s)	251, 320, 553, 627
KpnI	GGTACC	1 cut(s)	255
Kzo9I	GATC	1 cut(s)	321
Lsp1109I	GCAGC	1 cut(s)	79
LweI	GCATC	4 cut(s)	22, 102, 274, 571
MaeI	CTAG	2 cut(s)	326, 444
MaeIII	GTNAC	2 cut(s)	5, 554
MalI	GATC	1 cut(s)	323
MboI	GATC	1 cut(s)	321
MboII	GAAGA	4 cut(s)	74, 191, 255, 623
MfeI	CAATTG	1 cut(s)	461
MflI	RGATCY	1 cut(s)	321
MhlI	GDGCHC	1 cut(s)	371
MluCI	AATT	3 cut(s)	461, 519, 672
MlyI	GAGTC	1 cut(s)	187
MmeI	TCCRAC	1 cut(s)	478
MnlI	CCTC	5 cut(s)	24, 33, 207, 208, 685
MseI	TTAA	2 cut(s)	437, 687
MslI	CAYNNNNRTG	1 cut(s)	110
MspA1I	CMGCKG	1 cut(s)	728
MspCI	CTTAAG	1 cut(s)	686
MspI	CCGG	1 cut(s)	529
MspR9I	CCNGG	1 cut(s)	566
MunI	CAATTG	1 cut(s)	461
MvaI	CCWGG	1 cut(s)	566
MwoI	GCNNNNNNNGC	4 cut(s)	41, 101, 590, 650
NdeII	GATC	1 cut(s)	321
NlaIII	CATG	4 cut(s)	251, 320, 553, 627
NlaIV	GGNNCC	4 cut(s)	21, 68, 219, 253
NmuCI	GTSAC	2 cut(s)	5, 554
NspI	RCATGY	1 cut(s)	627
PagI	TCATGA	1 cut(s)	549
PfeI	GAWTC	6 cut(s)	122, 400, 409, 427, 455, 707
PkrI	GCNGC	2 cut(s)	94, 727
PleI	GAGTC	1 cut(s)	187
PpsI	GAGTC	1 cut(s)	187
Psp6I	CCWGG	1 cut(s)	564
PspGI	CCWGG	1 cut(s)	564
PspN4I	GGNNCC	4 cut(s)	21, 68, 219, 253
PspPI	GGNCC	1 cut(s)	652
PstNI	CAGNNNCTG	1 cut(s)	115
PsuI	RGATCY	1 cut(s)	321
PvuII	CAGCTG	1 cut(s)	728
RsaI	GTAC	2 cut(s)	253, 697
RsaNI	GTAC	2 cut(s)	252, 696
RseI	CAYNNNNRTG	1 cut(s)	110
SaqAI	TTAA	2 cut(s)	437, 687
SatI	GCNGC	2 cut(s)	93, 726
Sau3AI	GATC	1 cut(s)	321
Sau96I	GGNCC	1 cut(s)	652
SchI	GAGTC	1 cut(s)	187
ScrFI	CCNGG	1 cut(s)	566
SduI	GDGCHC	1 cut(s)	371
SetI	ASST	7 cut(s)	25, 72, 219, 257, 574, 640, 730
SfaNI	GCATC	4 cut(s)	22, 102, 274, 571
SmiMI	CAYNNNNRTG	1 cut(s)	110
SmlI	CTYRAG	2 cut(s)	292, 686
SmoI	CTYRAG	2 cut(s)	292, 686
Sse9I	AATT	3 cut(s)	461, 519, 672
SspMI	CTAG	2 cut(s)	326, 444
StyD4I	CCNGG	1 cut(s)	564
StyI	CCWWGG	1 cut(s)	655
TaaI	ACNGT	1 cut(s)	479
TasI	AATT	3 cut(s)	461, 519, 672
TfiI	GAWTC	6 cut(s)	122, 400, 409, 427, 455, 707
Tru1I	TTAA	2 cut(s)	437, 687
Tru9I	TTAA	2 cut(s)	437, 687
TscAI	CASTG	1 cut(s)	484
TseFI	GTSAC	2 cut(s)	5, 554
TseI	GCWGC	2 cut(s)	92, 725
Tsp45I	GTSAC	2 cut(s)	5, 554
TspDTI	ATGAA	1 cut(s)	478
TspRI	CASTG	1 cut(s)	484
Vha464I	CTTAAG	1 cut(s)	686
XceI	RCATGY	1 cut(s)	627
XspI	CTAG	2 cut(s)	326, 444

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.