Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0004868

Physical Location & Seq

Genomic Coordinates Forward (+)

27848061 .. 27855946

Gene Structure 7886 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1186200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGGTGGCCACTGCATTGCTGCTTACTTCCTCTTTACTGCTGATTACGGCCCCGAGCCCAACGCTCTCGATCCTCTGTAGAATGAATGTGGGTTGTTTCATTGATGCTGAAACAATGGTTTCTCCAACAATTTTTGCCCGTCGTAGTTTATCTTTTCTCATGAGTGACAAGCCTCAGGAACCTCTCAACGAAGCAATGCAAGCACAAGTAGTTTCCCCAGTTTGGCACATTCGACCAAATCCAAAGTCATTAGTTGCTTCTTTGACTCCTCTTCAGAAAGAGACTGAGGTTCCTTCTTTTGTTTTGATGGGTATCCCACATGGTACCTTCTGGTCTTCTCTTTCACAAGTCGGTGATGCCTGCTCAAGAACGGATATGACCGCTATACATGAGATCCTAGAGAATATCGGCTATAAAGACGATGGAATGACAAATGAGTGCTCGTTCAAATGTGGACTGACCAAATGCAGGAATGATAAGATTCAAAGAAAATGGGGGATTCTGCTTTTAAGCACTAGGACATCAGAACCACAATTGAGTGTTATTCACAGGTCATTGGAGTTTGAACAATGGTTTCTCCAACAATTTTTGACCGGCGTAGTTTGTCTTATCTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009506 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009987 GO:0010033 GO:0014070 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0030054 GO:0032870 GO:0033993 GO:0036211 GO:0038023 GO:0042221 GO:0043170 GO:0043401 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048545 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0060089 GO:0065007 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

206

Amino Acids

22.82

Weight (kDa)

6.41

Isoelectric Point (pI)

54.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_BSK1_C	PF25575	33 - 77	1.7e-15	Serine/threonine-protein kinase BSK1-like, TPR repeats
TPR_BSK1_C	PF25575	119 - 163	6.9e-10	Serine/threonine-protein kinase BSK1-like, TPR repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004868)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g14100
malus_domestica	MD01G1056900.v1.1 MD14G1186200.v1.1 MD14G1186400.v1.1 MD14G1186600.v1.1
pyrus_communis	pycom01g08300 pycom01g08310 pycom01g08390 pycom01g08420 pycom01g08480 pycom01g08650 pycom01g08680 pycom01g08710 pycom02g23240
rosa_chinensis	RchiOBHm_Chr1g0324601 RchiOBHm_Chr1g0354681 RchiOBHm_Chr1g0354861
rosa_laevigata	RLG00000028186
rosa_multiflora	Rmu_sc0003940.1_g000003 Rmu_sc0006632.1_g000017
rosa_roxburghii	Rroxscaffold_4G00325320
rosa_rugosa	Rorug01G0244200 Rorug01G0244200 Rorug01G0244300
rosa_samantha	Rh1AG255200 Rh1AG256400 Rh1BG225700 Rh1CG239700
rosa_wichuraiana	Rw1G022330 Rw1G022370 Rw1G022400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	323
AccB1I	GGYRCC	1 cut(s)	323
AciI	CCGC	1 cut(s)	381
AclWI	GGATC	2 cut(s)	64, 388
AcoI	YGGCCR	1 cut(s)	6
AcuI	CTGAAG	1 cut(s)	257
AfaI	GTAC	1 cut(s)	325
AfiI	CCNNNNNNNGG	2 cut(s)	222, 468
AgsI	TTSAA	3 cut(s)	448, 485, 566
Alw21I	GWGCWC	1 cut(s)	443
Alw26I	GTCTC	1 cut(s)	275
AlwI	GGATC	2 cut(s)	64, 388
Ama87I	CYCGRG	1 cut(s)	52
AoxI	GGCC	2 cut(s)	6, 48
ApeKI	GCWGC	1 cut(s)	19
ArsI	GACNNNNNNTTYG	2 cut(s)	230, 262
Asp718I	GGTACC	1 cut(s)	323
AspS9I	GGNCC	1 cut(s)	49
AsuHPI	GGTGA	1 cut(s)	365
AvaI	CYCGRG	1 cut(s)	52
AxyI	CCTNAGG	1 cut(s)	174
BalI	TGGCCA	1 cut(s)	8
BanI	GGYRCC	1 cut(s)	323
BanII	GRGCYC	1 cut(s)	59
BbsI	GAAGAC	1 cut(s)	327
Bbv12I	GWGCWC	1 cut(s)	443
BbvI	GCAGC	1 cut(s)	6
BccI	CCATC	2 cut(s)	301, 416
BceAI	ACGGC	1 cut(s)	63
BciVI	GTATCC	1 cut(s)	323
BcoDI	GTCTC	1 cut(s)	275
BfaI	CTAG	2 cut(s)	398, 516
BfmI	CTRYAG	1 cut(s)	76
BfuI	GTATCC	1 cut(s)	323
BisI	GCNGC	1 cut(s)	20
BlsI	GCNGC	1 cut(s)	21
BmeT110I	CYCGRG	1 cut(s)	52
BmgT120I	GGNCC	1 cut(s)	49
BmiI	GGNNCC	4 cut(s)	51, 180, 291, 325
BmrI	ACTGGG	1 cut(s)	212
BmsI	GCATC	2 cut(s)	94, 346
BmuI	ACTGGG	1 cut(s)	212
BpiI	GAAGAC	1 cut(s)	327
BpuEI	CTTGAG	1 cut(s)	349
BsaBI	GATNNNNATC	1 cut(s)	311
Bsc4I	CCNNNNNNNGG	2 cut(s)	222, 468
Bse118I	RCCGGY	1 cut(s)	593
Bse1I	ACTGG	1 cut(s)	218
Bse21I	CCTNAGG	1 cut(s)	174
Bse3DI	GCAATG	2 cut(s)	14, 201
Bse8I	GATNNNNATC	1 cut(s)	311
BseJI	GATNNNNATC	1 cut(s)	311
BseLI	CCNNNNNNNGG	2 cut(s)	222, 468
BseMI	GCAATG	2 cut(s)	14, 201
BseMII	CTCAG	2 cut(s)	188, 276
BseNI	ACTGG	1 cut(s)	218
BseRI	GAGGAG	1 cut(s)	258
BseXI	GCAGC	1 cut(s)	6
BshFI	GGCC	2 cut(s)	8, 50
BshNI	GGYRCC	1 cut(s)	323
BsiHKAI	GWGCWC	1 cut(s)	443
BsiHKCI	CYCGRG	1 cut(s)	52
BsiSI	CCGG	1 cut(s)	594
BslI	CCNNNNNNNGG	2 cut(s)	222, 468
BsmAI	GTCTC	1 cut(s)	275
BsnI	GGCC	2 cut(s)	8, 50
BsoBI	CYCGRG	1 cut(s)	52
Bsp1286I	GDGCHC	2 cut(s)	59, 443
Bsp143I	GATC	2 cut(s)	69, 393
BspACI	CCGC	1 cut(s)	381
BspANI	GGCC	2 cut(s)	8, 50
BspCNI	CTCAG	2 cut(s)	187, 277
BspHI	TCATGA	2 cut(s)	159, 614
BspLI	GGNNCC	4 cut(s)	51, 180, 291, 325
BspPI	GGATC	2 cut(s)	64, 388
BspT107I	GGYRCC	1 cut(s)	323
BsrDI	GCAATG	2 cut(s)	14, 201
BsrFI	RCCGGY	1 cut(s)	593
BsrI	ACTGG	1 cut(s)	218
BssAI	RCCGGY	1 cut(s)	593
BssMI	GATC	2 cut(s)	69, 393
Bst6I	CTCTTC	1 cut(s)	276
BstC8I	GCNNGC	2 cut(s)	201, 361
BstDEI	CTNAG	2 cut(s)	174, 285
BstKTI	GATC	2 cut(s)	72, 396
BstMAI	GTCTC	1 cut(s)	275
BstMBI	GATC	2 cut(s)	69, 393
BstMWI	GCNNNNNNNGC	1 cut(s)	200
BstSFI	CTRYAG	1 cut(s)	76
BstV1I	GCAGC	1 cut(s)	6
BstV2I	GAAGAC	1 cut(s)	327
BstX2I	RGATCY	1 cut(s)	393
BstYI	RGATCY	1 cut(s)	393
Bsu36I	CCTNAGG	1 cut(s)	174
BsuI	GTATCC	1 cut(s)	323
BsuRI	GGCC	2 cut(s)	8, 50
BtsI	GCAGTG	1 cut(s)	9
BtsIMutI	CAGTG	1 cut(s)	9
Cac8I	GCNNGC	2 cut(s)	201, 361
CciI	TCATGA	2 cut(s)	159, 614
Cfr10I	RCCGGY	1 cut(s)	593
Cfr13I	GGNCC	1 cut(s)	49
Csp6I	GTAC	1 cut(s)	324
CviAII	CATG	4 cut(s)	160, 320, 389, 615
CviJI	RGCY	5 cut(s)	8, 50, 57, 172, 411
CviKI_1	RGCY	5 cut(s)	8, 50, 57, 172, 411
CviQI	GTAC	1 cut(s)	324
DdeI	CTNAG	2 cut(s)	174, 285
DpnI	GATC	2 cut(s)	71, 395
DpnII	GATC	2 cut(s)	69, 393
EaeI	YGGCCR	1 cut(s)	6
Eam1104I	CTCTTC	1 cut(s)	276
EarI	CTCTTC	1 cut(s)	276
Eco24I	GRGCYC	1 cut(s)	59
Eco57I	CTGAAG	1 cut(s)	257
Eco81I	CCTNAGG	1 cut(s)	174
Eco88I	CYCGRG	1 cut(s)	52
EcoT38I	GRGCYC	1 cut(s)	59
FaeI	CATG	4 cut(s)	163, 323, 392, 618
FaiI	YATR	7 cut(s)	161, 321, 377, 386, 390, 414, 616
FatI	CATG	4 cut(s)	159, 319, 388, 614
Fnu4HI	GCNGC	1 cut(s)	20
FriOI	GRGCYC	1 cut(s)	59
Fsp4HI	GCNGC	1 cut(s)	20
FspBI	CTAG	2 cut(s)	398, 516
GluI	GCNGC	1 cut(s)	20
HaeIII	GGCC	2 cut(s)	8, 50
HapII	CCGG	1 cut(s)	594
Hin1II	CATG	4 cut(s)	163, 323, 392, 618
HinfI	GANTC	3 cut(s)	265, 481, 499
HpaII	CCGG	1 cut(s)	594
HphI	GGTGA	1 cut(s)	365
Hpy166II	GTNNAC	1 cut(s)	455
Hpy188I	TCNGA	2 cut(s)	276, 526
Hpy188III	TCNNGA	5 cut(s)	67, 160, 176, 366, 615
Hpy8I	GTNNAC	1 cut(s)	455
Hpy99I	CGWCG	1 cut(s)	144
HpyAV	CCTTC	2 cut(s)	303, 337
HpyCH4V	TGCA	3 cut(s)	14, 199, 468
HpyF10VI	GCNNNNNNNGC	1 cut(s)	200
HpyF3I	CTNAG	2 cut(s)	174, 285
Hsp92II	CATG	4 cut(s)	163, 323, 392, 618
KpnI	GGTACC	1 cut(s)	327
Kzo9I	GATC	2 cut(s)	69, 393
LpnPI	CCDG	7 cut(s)	161, 231, 316, 373, 454, 535, 607
Lsp1109I	GCAGC	1 cut(s)	6
LweI	GCATC	2 cut(s)	94, 346
MaeI	CTAG	2 cut(s)	398, 516
MaeIII	GTNAC	1 cut(s)	164
MalI	GATC	2 cut(s)	71, 395
MboI	GATC	2 cut(s)	69, 393
MboII	GAAGA	2 cut(s)	263, 327
MfeI	CAATTG	1 cut(s)	533
MflI	RGATCY	1 cut(s)	393
MhlI	GDGCHC	2 cut(s)	59, 443
MlsI	TGGCCA	1 cut(s)	8
MluCI	AATT	3 cut(s)	129, 533, 584
MluNI	TGGCCA	1 cut(s)	8
MlyI	GAGTC	1 cut(s)	259
MmeI	TCCRAC	2 cut(s)	149, 604
MnlI	CCTC	6 cut(s)	40, 83, 183, 192, 279, 280
Mox20I	TGGCCA	1 cut(s)	8
MscI	TGGCCA	1 cut(s)	8
MseI	TTAA	1 cut(s)	509
Msp20I	TGGCCA	1 cut(s)	8
MspI	CCGG	1 cut(s)	594
MunI	CAATTG	1 cut(s)	533
MwoI	GCNNNNNNNGC	1 cut(s)	200
NdeII	GATC	2 cut(s)	69, 393
NlaIII	CATG	4 cut(s)	163, 323, 392, 618
NlaIV	GGNNCC	4 cut(s)	51, 180, 291, 325
NmuCI	GTSAC	1 cut(s)	164
PagI	TCATGA	2 cut(s)	159, 614
PfeI	GAWTC	2 cut(s)	481, 499
PkrI	GCNGC	1 cut(s)	21
PleI	GAGTC	1 cut(s)	259
PpsI	GAGTC	1 cut(s)	259
PspN4I	GGNNCC	4 cut(s)	51, 180, 291, 325
PspPI	GGNCC	1 cut(s)	49
PsuI	RGATCY	1 cut(s)	393
RsaI	GTAC	1 cut(s)	325
RsaNI	GTAC	1 cut(s)	324
SaqAI	TTAA	1 cut(s)	509
SatI	GCNGC	1 cut(s)	20
Sau3AI	GATC	2 cut(s)	69, 393
Sau96I	GGNCC	1 cut(s)	49
SchI	GAGTC	1 cut(s)	259
SduI	GDGCHC	2 cut(s)	59, 443
SetI	ASST	4 cut(s)	184, 291, 329, 554
SfaNI	GCATC	2 cut(s)	94, 346
SfcI	CTRYAG	1 cut(s)	76
SmlI	CTYRAG	1 cut(s)	364
SmoI	CTYRAG	1 cut(s)	364
Sse9I	AATT	3 cut(s)	129, 533, 584
SsiI	CCGC	1 cut(s)	381
SspMI	CTAG	2 cut(s)	398, 516
TaqI	TCGA	2 cut(s)	68, 232
TasI	AATT	3 cut(s)	129, 533, 584
TfiI	GAWTC	2 cut(s)	481, 499
Tru1I	TTAA	1 cut(s)	509
Tru9I	TTAA	1 cut(s)	509
TscAI	CASTG	1 cut(s)	16
TseFI	GTSAC	1 cut(s)	164
TseI	GCWGC	1 cut(s)	19
Tsp45I	GTSAC	1 cut(s)	164
TspDTI	ATGAA	2 cut(s)	88, 98
TspGWI	ACGGA	1 cut(s)	386
TspRI	CASTG	1 cut(s)	16
XspI	CTAG	2 cut(s)	398, 516

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.