Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004868

Physical Location & Seq

Genomic Coordinates Forward (+)

47538149 .. 47539455

Gene Structure 1307 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ58020

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGTCTGCTAACAGAGCTTTGGAAATCAATAGATCCCTGTGTAAAAACTTATCAATTGGGGTGTTATCCTGCATGATCTGTATGTGTTATCCTGCTGACAGTTGCTGCTACTTGCAGTTCATTGATGTTGGAAACATGGCTTCTCCCACAATTTTTGTCCGTCGTAGTTTGTTTTATCTCATGGATGAGATGCCTCTGGATGCTTTAAACGATGCAATGCAAGCTCAAGTAATTTCCCCAATAAGGCACATTGCATCTTATCTACAGGCTGCTGCCCTTTTTGCACTCGGAATGGAGACTGAGGCGCAATCAGCACTGAAGGAGGGTAAGTGCTTGAAACCAAAAGGAACACTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009506 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009987 GO:0010033 GO:0014070 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0030054 GO:0032870 GO:0033993 GO:0036211 GO:0038023 GO:0042221 GO:0043170 GO:0043401 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048545 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0060089 GO:0065007 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

118

Amino Acids

12.96

Weight (kDa)

6.53

Isoelectric Point (pI)

67.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_BSK1_C	PF25575	36 - 90	2.1e-19	Serine/threonine-protein kinase BSK1-like, TPR repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004868)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g14100
malus_domestica	MD01G1056900.v1.1 MD14G1186200.v1.1 MD14G1186400.v1.1 MD14G1186600.v1.1
pyrus_communis	pycom01g08300 pycom01g08310 pycom01g08390 pycom01g08420 pycom01g08480 pycom01g08650 pycom01g08680 pycom01g08710 pycom02g23240
rosa_chinensis	RchiOBHm_Chr1g0324601 RchiOBHm_Chr1g0354681 RchiOBHm_Chr1g0354861
rosa_laevigata	RLG00000028186
rosa_multiflora	Rmu_sc0003940.1_g000003 Rmu_sc0006632.1_g000017
rosa_roxburghii	Rroxscaffold_4G00325320
rosa_rugosa	Rorug01G0244200 Rorug01G0244200 Rorug01G0244300
rosa_samantha	Rh1AG255200 Rh1AG256400 Rh1BG225700 Rh1CG239700
rosa_wichuraiana	Rw1G022330 Rw1G022370 Rw1G022400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	27
AcuI	CTGAAG	1 cut(s)	338
AfiI	CCNNNNNNNGG	1 cut(s)	243
AgsI	TTSAA	1 cut(s)	337
AluBI	AGCT	2 cut(s)	17, 224
AluI	AGCT	2 cut(s)	17, 224
Alw26I	GTCTC	1 cut(s)	290
AlwI	GGATC	1 cut(s)	27
AlwNI	CAGNNNCTG	1 cut(s)	105
ApeKI	GCWGC	3 cut(s)	105, 269, 272
AspLEI	GCGC	1 cut(s)	307
BbvI	GCAGC	3 cut(s)	92, 256, 259
BcoDI	GTCTC	1 cut(s)	290
BfmI	CTRYAG	2 cut(s)	263, 353
BisI	GCNGC	3 cut(s)	106, 270, 273
BlsI	GCNGC	3 cut(s)	107, 271, 274
BmsI	GCATC	4 cut(s)	180, 190, 202, 263
BpuEI	CTTGAG	1 cut(s)	210
BsaXI	ACNNNNNCTCC	2 cut(s)	314, 344
Bsc4I	CCNNNNNNNGG	1 cut(s)	243
Bse3DI	GCAATG	2 cut(s)	222, 249
BseGI	GGATG	2 cut(s)	190, 205
BseLI	CCNNNNNNNGG	1 cut(s)	243
BseMI	GCAATG	2 cut(s)	222, 249
BseMII	CTCAG	1 cut(s)	291
BseXI	GCAGC	3 cut(s)	92, 256, 259
BslI	CCNNNNNNNGG	1 cut(s)	243
BsmAI	GTCTC	1 cut(s)	290
Bsp143I	GATC	2 cut(s)	32, 75
BspCNI	CTCAG	1 cut(s)	292
BspPI	GGATC	1 cut(s)	27
BsrDI	GCAATG	2 cut(s)	222, 249
BssMI	GATC	2 cut(s)	32, 75
Bst4CI	ACNGT	2 cut(s)	101, 354
BstC8I	GCNNGC	1 cut(s)	222
BstDEI	CTNAG	1 cut(s)	300
BstF5I	GGATG	2 cut(s)	190, 205
BstHHI	GCGC	1 cut(s)	307
BstKTI	GATC	2 cut(s)	35, 78
BstMAI	GTCTC	1 cut(s)	290
BstMBI	GATC	2 cut(s)	32, 75
BstMWI	GCNNNNNNNGC	4 cut(s)	14, 221, 281, 311
BstSFI	CTRYAG	2 cut(s)	263, 353
BstV1I	GCAGC	3 cut(s)	92, 256, 259
BstX2I	RGATCY	1 cut(s)	32
BstYI	RGATCY	1 cut(s)	32
BtsCI	GGATG	2 cut(s)	190, 205
BtsIMutI	CAGTG	2 cut(s)	314, 350
Cac8I	GCNNGC	1 cut(s)	222
CaiI	CAGNNNCTG	1 cut(s)	105
CfoI	GCGC	1 cut(s)	307
CspCI	CAANNNNNGTGG	2 cut(s)	136, 171
CviAII	CATG	3 cut(s)	73, 136, 181
CviJI	RGCY	4 cut(s)	17, 140, 224, 269
CviKI_1	RGCY	4 cut(s)	17, 140, 224, 269
DdeI	CTNAG	1 cut(s)	300
DpnI	GATC	2 cut(s)	34, 77
DpnII	GATC	2 cut(s)	32, 75
DraI	TTTAAA	1 cut(s)	207
Eco57I	CTGAAG	1 cut(s)	338
FaeI	CATG	3 cut(s)	76, 139, 184
FaiI	YATR	4 cut(s)	74, 83, 137, 182
FatI	CATG	3 cut(s)	72, 135, 180
Fnu4HI	GCNGC	3 cut(s)	106, 270, 273
FokI	GGATG	2 cut(s)	197, 212
Fsp4HI	GCNGC	3 cut(s)	106, 270, 273
GlaI	GCGC	1 cut(s)	306
GluI	GCNGC	3 cut(s)	106, 270, 273
HhaI	GCGC	1 cut(s)	307
Hin1II	CATG	3 cut(s)	76, 139, 184
Hin6I	GCGC	1 cut(s)	305
HinP1I	GCGC	1 cut(s)	305
Hpy188I	TCNGA	1 cut(s)	290
Hpy188III	TCNNGA	1 cut(s)	197
Hpy99I	CGWCG	1 cut(s)	165
HpyAV	CCTTC	1 cut(s)	313
HpyCH4III	ACNGT	2 cut(s)	101, 354
HpyCH4V	TGCA	6 cut(s)	72, 115, 215, 220, 254, 284
HpyF10VI	GCNNNNNNNGC	4 cut(s)	14, 221, 281, 311
HpyF3I	CTNAG	1 cut(s)	300
Hsp92II	CATG	3 cut(s)	76, 139, 184
HspAI	GCGC	1 cut(s)	305
Kzo9I	GATC	2 cut(s)	32, 75
LpnPI	CCDG	5 cut(s)	50, 82, 105, 182, 251
Lsp1109I	GCAGC	3 cut(s)	92, 256, 259
LweI	GCATC	4 cut(s)	180, 190, 202, 263
MalI	GATC	2 cut(s)	34, 77
MboI	GATC	2 cut(s)	32, 75
MfeI	CAATTG	1 cut(s)	54
MflI	RGATCY	1 cut(s)	32
MluCI	AATT	3 cut(s)	54, 150, 231
MmeI	TCCRAC	1 cut(s)	109
MnlI	CCTC	3 cut(s)	204, 295, 316
MseI	TTAA	1 cut(s)	206
MunI	CAATTG	1 cut(s)	54
MwoI	GCNNNNNNNGC	4 cut(s)	14, 221, 281, 311
NdeII	GATC	2 cut(s)	32, 75
NlaIII	CATG	3 cut(s)	76, 139, 184
PkrI	GCNGC	3 cut(s)	107, 271, 274
PstNI	CAGNNNCTG	1 cut(s)	105
PsuI	RGATCY	1 cut(s)	32
SaqAI	TTAA	1 cut(s)	206
SatI	GCNGC	3 cut(s)	106, 270, 273
Sau3AI	GATC	2 cut(s)	32, 75
SetI	ASST	2 cut(s)	19, 226
SfaNI	GCATC	4 cut(s)	180, 190, 202, 263
SfcI	CTRYAG	2 cut(s)	263, 353
SmlI	CTYRAG	1 cut(s)	225
SmoI	CTYRAG	1 cut(s)	225
Sse9I	AATT	3 cut(s)	54, 150, 231
TaaI	ACNGT	2 cut(s)	101, 354
TasI	AATT	3 cut(s)	54, 150, 231
Tru1I	TTAA	1 cut(s)	206
Tru9I	TTAA	1 cut(s)	206
TscAI	CASTG	2 cut(s)	321, 357
TseI	GCWGC	3 cut(s)	105, 269, 272
TspDTI	ATGAA	1 cut(s)	109
TspGWI	ACGGA	1 cut(s)	149
TspRI	CASTG	2 cut(s)	321, 357

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.