Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0004868

Physical Location & Seq

Genomic Coordinates Forward (+)

47319511 .. 47320299

Gene Structure 789 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G022370.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

ATGAAGTTACTCGATGACGGTAATAGAAGGTGTTTATTTTGGTCTATGCGTATGCGACGTTCATTGATGTTGGAAACATGGTTTCTCCCACAATTTTTGTCTTATCTCATGGATGAGATGCCTCTGGAAGCTTTAAACGATGCAATGCAAGCTCAAGTAATTTCCACAATATGGCACATTGCATCTTATCTACAGGCTGCTGCCCTTTTTGCACTCGGAATGGAGACTGAGGCACAATCAGCACTGAAGGAGGGTACTGTGCTTGAAACCAAAAGGAACACTGCAGCTGGACTCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009506 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009987 GO:0010033 GO:0014070 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0030054 GO:0032870 GO:0033993 GO:0036211 GO:0038023 GO:0042221 GO:0043170 GO:0043401 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048545 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0060089 GO:0065007 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

99

Amino Acids

11.33

Weight (kDa)

5.75

Isoelectric Point (pI)

46.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_BSK1_C	PF25575	21 - 66	3.8e-12	Serine/threonine-protein kinase BSK1-like, TPR repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004868)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g14100
malus_domestica	MD01G1056900.v1.1 MD14G1186200.v1.1 MD14G1186400.v1.1 MD14G1186600.v1.1
pyrus_communis	pycom01g08300 pycom01g08310 pycom01g08390 pycom01g08420 pycom01g08480 pycom01g08650 pycom01g08680 pycom01g08710 pycom02g23240
rosa_chinensis	RchiOBHm_Chr1g0324601 RchiOBHm_Chr1g0354681 RchiOBHm_Chr1g0354861
rosa_laevigata	RLG00000028186
rosa_multiflora	Rmu_sc0003940.1_g000003 Rmu_sc0006632.1_g000017
rosa_roxburghii	Rroxscaffold_4G00325320
rosa_rugosa	Rorug01G0244200 Rorug01G0244200 Rorug01G0244300
rosa_samantha	Rh1AG255200 Rh1AG256400 Rh1BG225700 Rh1CG239700
rosa_wichuraiana	Rw1G022330 Rw1G022370 Rw1G022400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	171
AcuI	CTGAAG	1 cut(s)	266
AfaI	GTAC	1 cut(s)	256
AfiI	CCNNNNNNNGG	1 cut(s)	171
AgsI	TTSAA	1 cut(s)	266
AluBI	AGCT	3 cut(s)	131, 152, 287
AluI	AGCT	3 cut(s)	131, 152, 287
Alw26I	GTCTC	1 cut(s)	218
ApeKI	GCWGC	3 cut(s)	197, 200, 284
BbvI	GCAGC	3 cut(s)	184, 187, 296
BcoDI	GTCTC	1 cut(s)	218
BfmI	CTRYAG	2 cut(s)	191, 282
BisI	GCNGC	3 cut(s)	198, 201, 285
BlsI	GCNGC	3 cut(s)	199, 202, 286
BmsI	GCATC	3 cut(s)	108, 130, 191
BpuEI	CTTGAG	2 cut(s)	138, 278
Bsc4I	CCNNNNNNNGG	1 cut(s)	171
Bse3DI	GCAATG	2 cut(s)	150, 177
BseGI	GGATG	1 cut(s)	118
BseLI	CCNNNNNNNGG	1 cut(s)	171
BseMI	GCAATG	2 cut(s)	150, 177
BseMII	CTCAG	1 cut(s)	219
BseXI	GCAGC	3 cut(s)	184, 187, 296
BslI	CCNNNNNNNGG	1 cut(s)	171
BsmAI	GTCTC	1 cut(s)	218
BspCNI	CTCAG	1 cut(s)	220
BspMAI	CTGCAG	1 cut(s)	286
BsrDI	GCAATG	2 cut(s)	150, 177
Bst4CI	ACNGT	2 cut(s)	20, 259
BstC8I	GCNNGC	1 cut(s)	150
BstDEI	CTNAG	1 cut(s)	228
BstF5I	GGATG	1 cut(s)	118
BstMAI	GTCTC	1 cut(s)	218
BstMWI	GCNNNNNNNGC	3 cut(s)	149, 209, 239
BstSFI	CTRYAG	2 cut(s)	191, 282
BstV1I	GCAGC	3 cut(s)	184, 187, 296
BtsCI	GGATG	1 cut(s)	118
BtsI	GCAGTG	1 cut(s)	279
BtsIMutI	CAGTG	2 cut(s)	242, 279
Cac8I	GCNNGC	1 cut(s)	150
Csp6I	GTAC	1 cut(s)	255
CspCI	CAANNNNNGTGG	2 cut(s)	78, 113
CviAII	CATG	2 cut(s)	78, 109
CviJI	RGCY	4 cut(s)	131, 152, 197, 287
CviKI_1	RGCY	4 cut(s)	131, 152, 197, 287
CviQI	GTAC	1 cut(s)	255
DdeI	CTNAG	1 cut(s)	228
DraI	TTTAAA	1 cut(s)	135
Eco57I	CTGAAG	1 cut(s)	266
FaeI	CATG	2 cut(s)	81, 112
FaiI	YATR	5 cut(s)	47, 53, 79, 110, 172
FatI	CATG	2 cut(s)	77, 108
Fnu4HI	GCNGC	3 cut(s)	198, 201, 285
FokI	GGATG	1 cut(s)	125
Fsp4HI	GCNGC	3 cut(s)	198, 201, 285
GluI	GCNGC	3 cut(s)	198, 201, 285
Hin1II	CATG	2 cut(s)	81, 112
HindIII	AAGCTT	1 cut(s)	129
HinfI	GANTC	1 cut(s)	291
Hpy188I	TCNGA	1 cut(s)	218
Hpy188III	TCNNGA	1 cut(s)	125
Hpy99I	CGWCG	1 cut(s)	60
HpyAV	CCTTC	2 cut(s)	21, 241
HpyCH4III	ACNGT	2 cut(s)	20, 259
HpyCH4IV	ACGT	1 cut(s)	58
HpyCH4V	TGCA	5 cut(s)	143, 148, 182, 212, 284
HpyF10VI	GCNNNNNNNGC	3 cut(s)	149, 209, 239
HpyF3I	CTNAG	1 cut(s)	228
HpySE526I	ACGT	1 cut(s)	58
Hsp92II	CATG	2 cut(s)	81, 112
LpnPI	CCDG	3 cut(s)	110, 179, 273
Lsp1109I	GCAGC	3 cut(s)	184, 187, 296
LweI	GCATC	3 cut(s)	108, 130, 191
MaeII	ACGT	1 cut(s)	58
MaeIII	GTNAC	1 cut(s)	6
MluCI	AATT	2 cut(s)	92, 159
MlyI	GAGTC	1 cut(s)	285
MmeI	TCCRAC	1 cut(s)	51
MnlI	CCTC	3 cut(s)	132, 223, 244
MseI	TTAA	1 cut(s)	134
MspA1I	CMGCKG	1 cut(s)	287
MwoI	GCNNNNNNNGC	3 cut(s)	149, 209, 239
NlaIII	CATG	2 cut(s)	81, 112
PflMI	CCANNNNNTGG	1 cut(s)	171
PkrI	GCNGC	3 cut(s)	199, 202, 286
PleI	GAGTC	1 cut(s)	285
PpsI	GAGTC	1 cut(s)	285
PsrI	GAACNNNNNNTAC	2 cut(s)	43, 75
PstI	CTGCAG	1 cut(s)	286
PvuII	CAGCTG	1 cut(s)	287
RsaI	GTAC	1 cut(s)	256
RsaNI	GTAC	1 cut(s)	255
SaqAI	TTAA	1 cut(s)	134
SatI	GCNGC	3 cut(s)	198, 201, 285
SchI	GAGTC	1 cut(s)	285
SetI	ASST	5 cut(s)	32, 61, 133, 154, 289
SfaNI	GCATC	3 cut(s)	108, 130, 191
SfcI	CTRYAG	2 cut(s)	191, 282
SgeI	CNNG	9 cut(s)	23, 90, 121, 137, 161, 167, 206, 227, 275
SmlI	CTYRAG	2 cut(s)	153, 293
SmoI	CTYRAG	2 cut(s)	153, 293
Sse9I	AATT	2 cut(s)	92, 159
TaaI	ACNGT	2 cut(s)	20, 259
TaiI	ACGT	1 cut(s)	61
TaqI	TCGA	1 cut(s)	12
TasI	AATT	2 cut(s)	92, 159
Tru1I	TTAA	1 cut(s)	134
Tru9I	TTAA	1 cut(s)	134
TscAI	CASTG	2 cut(s)	249, 286
TseI	GCWGC	3 cut(s)	197, 200, 284
TspDTI	ATGAA	2 cut(s)	17, 51
TspRI	CASTG	2 cut(s)	249, 286
Van91I	CCANNNNNTGG	1 cut(s)	171

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.