Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0004868

Physical Location & Seq

Genomic Coordinates Forward (+)

9645144 .. 9645335

Gene Structure 192 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g08710.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 192 bp

ATGAGTGACAAGCCTCAGGAAGCTATAAACGATGCAATGCAAGCACAAGTAGTTTCCCCACTTTGGCACATTGCATGTTATCTTCAGGCTGTTACCCTTTCGGCCCTTGGAATGGACATTGAAGCTCAAGCAACACTTAAGGAGGGTACTACGCTTGAATCCAAAAGGAGTAAAGCAGTTGGAAAAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009506 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009987 GO:0010033 GO:0014070 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0030054 GO:0032870 GO:0033993 GO:0036211 GO:0038023 GO:0042221 GO:0043170 GO:0043401 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048545 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0060089 GO:0065007 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

64

Amino Acids

6.8

Weight (kDa)

6.54

Isoelectric Point (pI)

67.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_BSK1_C	PF25575	1 - 30	6e-10	Serine/threonine-protein kinase BSK1-like, TPR repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0004868)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g14100
malus_domestica	MD01G1056900.v1.1 MD14G1186200.v1.1 MD14G1186400.v1.1 MD14G1186600.v1.1
pyrus_communis	pycom01g08300 pycom01g08310 pycom01g08390 pycom01g08420 pycom01g08480 pycom01g08650 pycom01g08680 pycom01g08710 pycom02g23240
rosa_chinensis	RchiOBHm_Chr1g0324601 RchiOBHm_Chr1g0354681 RchiOBHm_Chr1g0354861
rosa_laevigata	RLG00000028186
rosa_multiflora	Rmu_sc0003940.1_g000003 Rmu_sc0006632.1_g000017
rosa_roxburghii	Rroxscaffold_4G00325320
rosa_rugosa	Rorug01G0244200 Rorug01G0244200 Rorug01G0244300
rosa_samantha	Rh1AG255200 Rh1AG256400 Rh1BG225700 Rh1CG239700
rosa_wichuraiana	Rw1G022330 Rw1G022370 Rw1G022400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	68
AfaI	GTAC	1 cut(s)	148
AfiI	CCNNNNNNNGG	2 cut(s)	63, 112
AflII	CTTAAG	1 cut(s)	137
AgsI	TTSAA	2 cut(s)	122, 158
AluBI	AGCT	2 cut(s)	23, 125
AluI	AGCT	2 cut(s)	23, 125
AoxI	GGCC	1 cut(s)	102
AspS9I	GGNCC	1 cut(s)	103
AxyI	CCTNAGG	1 cut(s)	15
BfrI	CTTAAG	1 cut(s)	137
BmgT120I	GGNCC	1 cut(s)	103
BmsI	GCATC	1 cut(s)	22
BpuEI	CTTGAG	1 cut(s)	111
BsaJI	CCNNGG	1 cut(s)	106
Bsc4I	CCNNNNNNNGG	2 cut(s)	63, 112
Bse21I	CCTNAGG	1 cut(s)	15
Bse3DI	GCAATG	2 cut(s)	42, 69
BseDI	CCNNGG	1 cut(s)	106
BseLI	CCNNNNNNNGG	2 cut(s)	63, 112
BseMI	GCAATG	2 cut(s)	42, 69
BseMII	CTCAG	1 cut(s)	29
BshFI	GGCC	1 cut(s)	104
BslI	CCNNNNNNNGG	2 cut(s)	63, 112
BsnI	GGCC	1 cut(s)	104
BspANI	GGCC	1 cut(s)	104
BspCNI	CTCAG	1 cut(s)	28
BspTI	CTTAAG	1 cut(s)	137
BsrDI	GCAATG	2 cut(s)	42, 69
BssECI	CCNNGG	1 cut(s)	106
BssT1I	CCWWGG	1 cut(s)	106
BstAFI	CTTAAG	1 cut(s)	137
BstC8I	GCNNGC	1 cut(s)	42
BstDEI	CTNAG	1 cut(s)	15
BstMWI	GCNNNNNNNGC	1 cut(s)	41
BstNSI	RCATGY	1 cut(s)	78
Bsu36I	CCTNAGG	1 cut(s)	15
BsuRI	GGCC	1 cut(s)	104
Cac8I	GCNNGC	1 cut(s)	42
Cfr13I	GGNCC	1 cut(s)	103
Csp6I	GTAC	1 cut(s)	147
CviAII	CATG	1 cut(s)	75
CviJI	RGCY	5 cut(s)	13, 23, 89, 104, 125
CviKI_1	RGCY	5 cut(s)	13, 23, 89, 104, 125
CviQI	GTAC	1 cut(s)	147
DdeI	CTNAG	1 cut(s)	15
Eco130I	CCWWGG	1 cut(s)	106
Eco57I	CTGAAG	1 cut(s)	68
Eco81I	CCTNAGG	1 cut(s)	15
EcoT14I	CCWWGG	1 cut(s)	106
ErhI	CCWWGG	1 cut(s)	106
FaeI	CATG	1 cut(s)	78
FaiI	YATR	2 cut(s)	26, 76
FalI	AAGNNNNNCTT	2 cut(s)	120, 152
FatI	CATG	1 cut(s)	74
HaeIII	GGCC	1 cut(s)	104
Hin1II	CATG	1 cut(s)	78
HinfI	GANTC	1 cut(s)	158
Hpy188III	TCNNGA	1 cut(s)	17
HpyCH4V	TGCA	3 cut(s)	35, 40, 74
HpyF10VI	GCNNNNNNNGC	1 cut(s)	41
HpyF3I	CTNAG	1 cut(s)	15
Hsp92II	CATG	1 cut(s)	78
LpnPI	CCDG	2 cut(s)	2, 71
LweI	GCATC	1 cut(s)	22
MaeIII	GTNAC	2 cut(s)	5, 91
MboII	GAAGA	1 cut(s)	74
MmeI	TCCRAC	1 cut(s)	160
MnlI	CCTC	2 cut(s)	24, 136
MseI	TTAA	1 cut(s)	138
MspCI	CTTAAG	1 cut(s)	137
MwoI	GCNNNNNNNGC	1 cut(s)	41
NlaIII	CATG	1 cut(s)	78
NmuCI	GTSAC	1 cut(s)	5
NspI	RCATGY	1 cut(s)	78
PfeI	GAWTC	1 cut(s)	158
PspPI	GGNCC	1 cut(s)	103
RsaI	GTAC	1 cut(s)	148
RsaNI	GTAC	1 cut(s)	147
SaqAI	TTAA	1 cut(s)	138
Sau96I	GGNCC	1 cut(s)	103
SetI	ASST	2 cut(s)	25, 127
SfaNI	GCATC	1 cut(s)	22
SgeI	CNNG	9 cut(s)	22, 29, 53, 59, 87, 98, 119, 140, 167
SmlI	CTYRAG	2 cut(s)	126, 137
SmoI	CTYRAG	2 cut(s)	126, 137
StyI	CCWWGG	1 cut(s)	106
TfiI	GAWTC	1 cut(s)	158
Tru1I	TTAA	1 cut(s)	138
Tru9I	TTAA	1 cut(s)	138
TseFI	GTSAC	1 cut(s)	5
Tsp45I	GTSAC	1 cut(s)	5
Vha464I	CTTAAG	1 cut(s)	137
XceI	RCATGY	1 cut(s)	78

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.