Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0004868

Physical Location & Seq

Genomic Coordinates Forward (+)

9253825 .. 9255390

Gene Structure 1566 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g08300.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGGTGGCCACTGTCATTCGCTCTCGACCCTGTCTGCAATTTGAGCTCACAAATTTTGGGGTTTTTCCATTTCGGTTCATTGATGTTGAAACAATGATTTCTCCAACAATTTTTGCCCGGCGTTGTTTGTCTTATCTCATGAGTGACAAGCCTCAAGAAGCTCTCCACGATGCAATGCAAGCACAAGTAGTTTCCCCTGTTTGGCACATTGTTTCTTATCTTCAGGGTGCTGCCCTTTCGGCCCTTGGAATGGACAGTGAAGTTCAAGCAGTACTTGTTATGAACTCTGCCTTCTTTTCACTGGGCTCAATCTGGGCTATTTGTGTAAGCTCGTATCTAACTATTGACCGATTCGTTATTTGTATTAATACTGAACGTTGTACCAAGCAGAAATATTTGAAAAGTTGGGAAACGGACGTGACTCTAATTTGTTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009506 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009987 GO:0010033 GO:0014070 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0030054 GO:0032870 GO:0033993 GO:0036211 GO:0038023 GO:0042221 GO:0043170 GO:0043401 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048545 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0060089 GO:0065007 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

146

Amino Acids

16.44

Weight (kDa)

6.06

Isoelectric Point (pI)

46.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004868)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g14100
malus_domestica	MD01G1056900.v1.1 MD14G1186200.v1.1 MD14G1186400.v1.1 MD14G1186600.v1.1
pyrus_communis	pycom01g08300 pycom01g08310 pycom01g08390 pycom01g08420 pycom01g08480 pycom01g08650 pycom01g08680 pycom01g08710 pycom02g23240
rosa_chinensis	RchiOBHm_Chr1g0324601 RchiOBHm_Chr1g0354681 RchiOBHm_Chr1g0354861
rosa_laevigata	RLG00000028186
rosa_multiflora	Rmu_sc0003940.1_g000003 Rmu_sc0006632.1_g000017
rosa_roxburghii	Rroxscaffold_4G00325320
rosa_rugosa	Rorug01G0244200 Rorug01G0244200 Rorug01G0244300
rosa_samantha	Rh1AG255200 Rh1AG256400 Rh1BG225700 Rh1CG239700
rosa_wichuraiana	Rw1G022330 Rw1G022370 Rw1G022400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	376
AcoI	YGGCCR	1 cut(s)	6
AcsI	RAATTY	1 cut(s)	52
AcuI	CTGAAG	1 cut(s)	206
AfaI	GTAC	2 cut(s)	273, 382
AfiI	CCNNNNNNNGG	2 cut(s)	201, 250
AgsI	TTSAA	3 cut(s)	89, 266, 400
AjiI	CACGTC	1 cut(s)	418
AluBI	AGCT	3 cut(s)	46, 161, 330
AluI	AGCT	3 cut(s)	46, 161, 330
Alw21I	GWGCWC	1 cut(s)	48
AoxI	GGCC	2 cut(s)	6, 240
ApeKI	GCWGC	1 cut(s)	230
ApoI	RAATTY	1 cut(s)	52
AseI	ATTAAT	1 cut(s)	366
AspS9I	GGNCC	1 cut(s)	241
AsuC2I	CCSGG	1 cut(s)	118
BalI	TGGCCA	1 cut(s)	8
BanII	GRGCYC	2 cut(s)	48, 308
Bbv12I	GWGCWC	1 cut(s)	48
BbvI	GCAGC	1 cut(s)	217
BcnI	CCSGG	1 cut(s)	118
BglI	GCCNNNNNGGC	1 cut(s)	239
BisI	GCNGC	1 cut(s)	231
BlsI	GCNGC	1 cut(s)	232
BmcAI	AGTACT	1 cut(s)	273
Bme1390I	CCNGG	1 cut(s)	118
BmgBI	CACGTC	1 cut(s)	418
BmgT120I	GGNCC	1 cut(s)	241
BmrFI	CCNGG	1 cut(s)	118
BmrI	ACTGGG	1 cut(s)	311
BmsI	GCATC	1 cut(s)	160
BmuI	ACTGGG	1 cut(s)	311
BpuEI	CTTGAG	1 cut(s)	138
BpuMI	CCSGG	1 cut(s)	118
BsaJI	CCNNGG	1 cut(s)	244
Bsc4I	CCNNNNNNNGG	2 cut(s)	201, 250
Bse1I	ACTGG	1 cut(s)	306
Bse3DI	GCAATG	1 cut(s)	180
BseDI	CCNNGG	1 cut(s)	244
BseLI	CCNNNNNNNGG	2 cut(s)	201, 250
BseMI	GCAATG	1 cut(s)	180
BseNI	ACTGG	1 cut(s)	306
BseXI	GCAGC	1 cut(s)	217
BshFI	GGCC	2 cut(s)	8, 242
BsiHKAI	GWGCWC	1 cut(s)	48
BsiSI	CCGG	1 cut(s)	118
BslI	CCNNNNNNNGG	2 cut(s)	201, 250
BsnI	GGCC	2 cut(s)	8, 242
Bsp1286I	GDGCHC	2 cut(s)	48, 308
BspANI	GGCC	2 cut(s)	8, 242
BspHI	TCATGA	1 cut(s)	138
BsrDI	GCAATG	1 cut(s)	180
BsrI	ACTGG	1 cut(s)	306
BssECI	CCNNGG	1 cut(s)	244
BssT1I	CCWWGG	1 cut(s)	244
Bst4CI	ACNGT	2 cut(s)	13, 257
BstC8I	GCNNGC	1 cut(s)	180
BstMWI	GCNNNNNNNGC	3 cut(s)	43, 179, 239
BstSCI	CCNGG	1 cut(s)	116
BstV1I	GCAGC	1 cut(s)	217
BsuRI	GGCC	2 cut(s)	8, 242
BtrI	CACGTC	1 cut(s)	418
BtsIMutI	CAGTG	3 cut(s)	9, 262, 299
Cac8I	GCNNGC	1 cut(s)	180
CciI	TCATGA	1 cut(s)	138
Cfr13I	GGNCC	1 cut(s)	241
Csp6I	GTAC	2 cut(s)	272, 381
CviAII	CATG	1 cut(s)	139
CviJI	RGCY	8 cut(s)	8, 46, 151, 161, 242, 306, 317, 330
CviKI_1	RGCY	8 cut(s)	8, 46, 151, 161, 242, 306, 317, 330
CviQI	GTAC	2 cut(s)	272, 381
EaeI	YGGCCR	1 cut(s)	6
Ecl136II	GAGCTC	1 cut(s)	46
Eco130I	CCWWGG	1 cut(s)	244
Eco24I	GRGCYC	2 cut(s)	48, 308
Eco53kI	GAGCTC	1 cut(s)	46
Eco57I	CTGAAG	1 cut(s)	206
EcoICRI	GAGCTC	1 cut(s)	46
EcoT14I	CCWWGG	1 cut(s)	244
EcoT38I	GRGCYC	2 cut(s)	48, 308
ErhI	CCWWGG	1 cut(s)	244
FaeI	CATG	1 cut(s)	142
FaiI	YATR	2 cut(s)	140, 281
FalI	AAGNNNNNCTT	2 cut(s)	258, 290
FatI	CATG	1 cut(s)	138
Fnu4HI	GCNGC	1 cut(s)	231
FriOI	GRGCYC	2 cut(s)	48, 308
Fsp4HI	GCNGC	1 cut(s)	231
GluI	GCNGC	1 cut(s)	231
HaeIII	GGCC	2 cut(s)	8, 242
HapII	CCGG	1 cut(s)	118
Hin1II	CATG	1 cut(s)	142
HinfI	GANTC	2 cut(s)	351, 421
HpaII	CCGG	1 cut(s)	118
Hpy188III	TCNNGA	3 cut(s)	24, 139, 155
HpyAV	CCTTC	1 cut(s)	301
HpyCH4III	ACNGT	2 cut(s)	13, 257
HpyCH4IV	ACGT	2 cut(s)	376, 417
HpyCH4V	TGCA	3 cut(s)	37, 173, 178
HpyF10VI	GCNNNNNNNGC	3 cut(s)	43, 179, 239
HpySE526I	ACGT	2 cut(s)	376, 417
Hsp92II	CATG	1 cut(s)	142
LpnPI	CCDG	6 cut(s)	43, 131, 209, 210, 287, 298
Lsp1109I	GCAGC	1 cut(s)	217
LweI	GCATC	1 cut(s)	160
MaeII	ACGT	2 cut(s)	376, 417
MaeIII	GTNAC	2 cut(s)	143, 418
MboII	GAAGA	1 cut(s)	212
MhlI	GDGCHC	2 cut(s)	48, 308
MlsI	TGGCCA	1 cut(s)	8
MluCI	AATT	4 cut(s)	38, 52, 108, 426
MluNI	TGGCCA	1 cut(s)	8
MlyI	GAGTC	1 cut(s)	415
MmeI	TCCRAC	1 cut(s)	128
MnlI	CCTC	1 cut(s)	162
Mox20I	TGGCCA	1 cut(s)	8
MscI	TGGCCA	1 cut(s)	8
MseI	TTAA	1 cut(s)	366
Msp20I	TGGCCA	1 cut(s)	8
MspI	CCGG	1 cut(s)	118
MspR9I	CCNGG	1 cut(s)	118
MwoI	GCNNNNNNNGC	3 cut(s)	43, 179, 239
NciI	CCSGG	1 cut(s)	118
NlaIII	CATG	1 cut(s)	142
NmuCI	GTSAC	2 cut(s)	143, 418
PagI	TCATGA	1 cut(s)	138
PfeI	GAWTC	1 cut(s)	351
PflFI	GACNNNGTC	1 cut(s)	30
PkrI	GCNGC	1 cut(s)	232
PleI	GAGTC	1 cut(s)	415
PpsI	GAGTC	1 cut(s)	415
PshBI	ATTAAT	1 cut(s)	366
Psp124BI	GAGCTC	1 cut(s)	48
Psp1406I	AACGTT	1 cut(s)	376
PspPI	GGNCC	1 cut(s)	241
PsyI	GACNNNGTC	1 cut(s)	30
RsaI	GTAC	2 cut(s)	273, 382
RsaNI	GTAC	2 cut(s)	272, 381
SacI	GAGCTC	1 cut(s)	48
SaqAI	TTAA	1 cut(s)	366
SatI	GCNGC	1 cut(s)	231
Sau96I	GGNCC	1 cut(s)	241
ScaI	AGTACT	1 cut(s)	273
SchI	GAGTC	1 cut(s)	415
ScrFI	CCNGG	1 cut(s)	118
SduI	GDGCHC	2 cut(s)	48, 308
SetI	ASST	5 cut(s)	48, 163, 332, 379, 420
SfaNI	GCATC	1 cut(s)	160
SmlI	CTYRAG	1 cut(s)	153
SmoI	CTYRAG	1 cut(s)	153
Sse9I	AATT	4 cut(s)	38, 52, 108, 426
SspI	AATATT	1 cut(s)	395
SstI	GAGCTC	1 cut(s)	48
StyD4I	CCNGG	1 cut(s)	116
StyI	CCWWGG	1 cut(s)	244
TaaI	ACNGT	2 cut(s)	13, 257
TaiI	ACGT	2 cut(s)	379, 420
TaqI	TCGA	1 cut(s)	25
TaqII	GACCGA	1 cut(s)	363
TasI	AATT	4 cut(s)	38, 52, 108, 426
TatI	WGTACW	1 cut(s)	271
TfiI	GAWTC	1 cut(s)	351
Tru1I	TTAA	1 cut(s)	366
Tru9I	TTAA	1 cut(s)	366
TscAI	CASTG	3 cut(s)	16, 262, 306
TseFI	GTSAC	2 cut(s)	143, 418
TseI	GCWGC	1 cut(s)	230
Tsp45I	GTSAC	2 cut(s)	143, 418
TspDTI	ATGAA	2 cut(s)	67, 296
TspGWI	ACGGA	1 cut(s)	428
TspRI	CASTG	3 cut(s)	16, 262, 306
Tth111I	GACNNNGTC	1 cut(s)	30
VspI	ATTAAT	1 cut(s)	366
XapI	RAATTY	1 cut(s)	52
ZrmI	AGTACT	1 cut(s)	273

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.