Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0004868

Physical Location & Seq

Genomic Coordinates Forward (+)

34987956 .. 34989361

Gene Structure 1406 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0244300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGAAAGTTCCACGCAAGAGCACAGCTGTCAACGTCAAGTCAACCTTTTCAATTGTGAAATGTCCATACTATCCATGCCTTTTATTATTTTTTTTTTTATCTGTTTATCTCTTCTTCTTCCCTATCTCTCTTCTCCTTCTGTTTATCTCCCTCCTCTCTCTTTCTGTTCGTCTCTCTTCTCTTCCCCATTCTTTCTCAAATGTCATCATCCACCTCTCACCACCTCCTCCTCGCTTCACCCTCCTCTCCCCCCTCCTCTCTCAAATCACCTTCCTCGGCCAAAACGACGCCGTCCTCCCCAAAAACGCAGACAGATCCCGGATCCTCCTAGCCAGGGACTGCGCCGGAGGGAACCTGGCCCACCACGTGGCCGTACGCGCCTGTCAGTGTCGGACAGTCAAGTTGGCCGGGTTGGTATCTATCCAACCGTTCTTCGGCGGCAAGGAGCGAACCGAGTCAGAGATCCGGCTCGAGAAGGATCCATTGGTCTCGGTGACCCTAACCGACTGGCTGTGGAAGGCGTTTTTGCCGGTCGGGTCGACCTGGGACCATGAGGTGGCGAACTTGAGCGGGCCGAACGCGGTGGACATTTCGGGTATGGAGTATCCGGCGACGGTGGTGTTCGTGGGAGGAGCGGATCCGCTGCAGGACTGGCAGATGAGGTACTATAATTGGTTGAGGAAATCAGGGATTGAGGCCAAGCTGATCGAGTATCCCAATATGTTTCATGGCTTCTATGCCTTGACGACGGGTCTGGGTTGGACGGAGGAGAGCAGCACGAAGCAGTCCAAGGCCTCGCTTGAGGGGGGGGAGAGGAGGGTGAAGCGAGGAGGAGGTGGTGAGAGGTGGATGATGACATTTGAGAAAGAATGGGGAAGAGAAGAGAGACGAACAGAAAGAGAAAGGAGGGAGATAAACAGAAGGAGAAGAGAGATAGGGAAGAAGAAGGAGAAGAGAGATAGGGAAGAAGAAGAGATAAACAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009506 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009987 GO:0010033 GO:0014070 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0030054 GO:0032870 GO:0033993 GO:0036211 GO:0038023 GO:0042221 GO:0043170 GO:0043401 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048545 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0060089 GO:0065007 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

328

Amino Acids

37.53

Weight (kDa)

9.55

Isoelectric Point (pI)

58.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Abhydrolase_3	PF07859	100 - 246	2.3e-28	alpha/beta hydrolase fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004868)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g14100
malus_domestica	MD01G1056900.v1.1 MD14G1186200.v1.1 MD14G1186400.v1.1 MD14G1186600.v1.1
pyrus_communis	pycom01g08300 pycom01g08310 pycom01g08390 pycom01g08420 pycom01g08480 pycom01g08650 pycom01g08680 pycom01g08710 pycom02g23240
rosa_chinensis	RchiOBHm_Chr1g0324601 RchiOBHm_Chr1g0354681 RchiOBHm_Chr1g0354861
rosa_laevigata	RLG00000028186
rosa_multiflora	Rmu_sc0003940.1_g000003 Rmu_sc0006632.1_g000017
rosa_roxburghii	Rroxscaffold_4G00325320
rosa_rugosa	Rorug01G0244200 Rorug01G0244200 Rorug01G0244300
rosa_samantha	Rh1AG255200 Rh1AG256400 Rh1BG225700 Rh1CG239700
rosa_wichuraiana	Rw1G022330 Rw1G022370 Rw1G022400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	367, 556
AccBSI	CCGCTC	2 cut(s)	570, 635
AccI	GTMKAC	1 cut(s)	539
AccII	CGCG	2 cut(s)	378, 581
AciI	CCGC	5 cut(s)	438, 570, 581, 635, 641
AclWI	GGATC	8 cut(s)	309, 316, 329, 457, 473, 486, 632, 645
AcoI	YGGCCR	3 cut(s)	277, 369, 405
AcvI	CACGTG	1 cut(s)	367
AcyI	GRCGYC	1 cut(s)	288
AdeI	CACNNNGTG	1 cut(s)	367
AfaI	GTAC	2 cut(s)	375, 665
AfiI	CCNNNNNNNGG	4 cut(s)	334, 367, 434, 556
AgsI	TTSAA	1 cut(s)	51
AhdI	GACNNNNNGTC	1 cut(s)	750
AjnI	CCWGG	3 cut(s)	332, 354, 542
AjuI	GAANNNNNNNTTGG	2 cut(s)	467, 499
AluBI	AGCT	2 cut(s)	26, 703
AluI	AGCT	2 cut(s)	26, 703
Alw21I	GWGCWC	1 cut(s)	23
Alw26I	GTCTC	3 cut(s)	176, 493, 880
AlwI	GGATC	8 cut(s)	309, 316, 329, 457, 473, 486, 632, 645
AlwNI	CAGNNNCTG	1 cut(s)	339
Ama87I	CYCGRG	1 cut(s)	470
AoxI	GGCC	7 cut(s)	277, 357, 369, 405, 572, 696, 792
ApeKI	GCWGC	2 cut(s)	643, 774
AspLEI	GCGC	2 cut(s)	344, 380
AspS9I	GGNCC	3 cut(s)	358, 547, 572
AsuC2I	CCSGG	2 cut(s)	319, 409
AsuHPI	GGTGA	6 cut(s)	210, 229, 259, 505, 832, 851
AvaI	CYCGRG	1 cut(s)	470
AvaII	GGWCC	1 cut(s)	547
BamHI	GGATCC	3 cut(s)	321, 478, 637
BbrPI	CACGTG	1 cut(s)	367
Bbv12I	GWGCWC	1 cut(s)	23
BbvI	GCAGC	2 cut(s)	630, 786
BceAI	ACGGC	2 cut(s)	275, 356
BciT130I	CCWGG	3 cut(s)	334, 356, 544
BciVI	GTATCC	2 cut(s)	615, 723
BcnI	CCSGG	2 cut(s)	319, 409
BcoDI	GTCTC	3 cut(s)	176, 493, 880
BfaI	CTAG	1 cut(s)	329
BfmI	CTRYAG	1 cut(s)	644
BfuI	GTATCC	2 cut(s)	615, 723
BisI	GCNGC	3 cut(s)	439, 644, 775
BlsI	GCNGC	3 cut(s)	440, 645, 776
Bme1390I	CCNGG	5 cut(s)	319, 334, 356, 409, 544
Bme18I	GGWCC	1 cut(s)	547
BmeRI	GACNNNNNGTC	1 cut(s)	750
BmeT110I	CYCGRG	1 cut(s)	470
BmgT120I	GGNCC	3 cut(s)	358, 547, 572
BmiI	GGNNCC	5 cut(s)	323, 353, 480, 548, 639
BmrFI	CCNGG	5 cut(s)	319, 334, 356, 409, 544
BpuEI	CTTGAG	2 cut(s)	586, 821
BpuMI	CCSGG	2 cut(s)	319, 409
BsaAI	YACGTR	1 cut(s)	367
BsaHI	GRCGYC	1 cut(s)	288
BsaI	GGTCTC	1 cut(s)	493
BsaJI	CCNNGG	4 cut(s)	274, 333, 543, 789
Bsc4I	CCNNNNNNNGG	4 cut(s)	334, 367, 434, 556
Bse118I	RCCGGY	1 cut(s)	529
Bse1I	ACTGG	2 cut(s)	512, 656
BseBI	CCWGG	3 cut(s)	334, 356, 544
BseDI	CCNNGG	4 cut(s)	274, 333, 543, 789
BseGI	GGATG	2 cut(s)	207, 855
BseLI	CCNNNNNNNGG	4 cut(s)	334, 367, 434, 556
BseNI	ACTGG	2 cut(s)	512, 656
BseXI	GCAGC	2 cut(s)	630, 786
Bsh1236I	CGCG	2 cut(s)	378, 581
Bsh1285I	CGRYCG	1 cut(s)	534
BshFI	GGCC	7 cut(s)	279, 359, 371, 407, 574, 698, 794
BsiEI	CGRYCG	1 cut(s)	534
BsiHKAI	GWGCWC	1 cut(s)	23
BsiHKCI	CYCGRG	1 cut(s)	470
BsiSI	CCGG	6 cut(s)	319, 345, 408, 466, 530, 608
BsiWI	CGTACG	1 cut(s)	373
BslFI	GGGAC	2 cut(s)	350, 560
BslI	CCNNNNNNNGG	4 cut(s)	334, 367, 434, 556
BsmAI	GTCTC	3 cut(s)	176, 493, 880
BsmBI	CGTCTC	2 cut(s)	176, 880
BsmFI	GGGAC	2 cut(s)	350, 560
BsnI	GGCC	7 cut(s)	279, 359, 371, 407, 574, 698, 794
Bso31I	GGTCTC	1 cut(s)	493
BsoBI	CYCGRG	1 cut(s)	470
Bsp1286I	GDGCHC	1 cut(s)	23
Bsp143I	GATC	6 cut(s)	314, 321, 462, 478, 637, 705
BspACI	CCGC	5 cut(s)	438, 570, 581, 635, 641
BspANI	GGCC	7 cut(s)	279, 359, 371, 407, 574, 698, 794
BspFNI	CGCG	2 cut(s)	378, 581
BspLI	GGNNCC	5 cut(s)	323, 353, 480, 548, 639
BspMAI	CTGCAG	1 cut(s)	648
BspPI	GGATC	8 cut(s)	309, 316, 329, 457, 473, 486, 632, 645
BspTNI	GGTCTC	1 cut(s)	493
BsrBI	CCGCTC	2 cut(s)	570, 635
BsrFI	RCCGGY	1 cut(s)	529
BsrI	ACTGG	2 cut(s)	512, 656
BssAI	RCCGGY	1 cut(s)	529
BssECI	CCNNGG	4 cut(s)	274, 333, 543, 789
BssMI	GATC	6 cut(s)	314, 321, 462, 478, 637, 705
BssNI	GRCGYC	1 cut(s)	288
BssT1I	CCWWGG	1 cut(s)	789
Bst2UI	CCWGG	3 cut(s)	334, 356, 544
Bst4CI	ACNGT	3 cut(s)	397, 429, 616
Bst6I	CTCTTC	9 cut(s)	116, 135, 181, 186, 871, 876, 922, 947, 966
BstACI	GRCGYC	1 cut(s)	288
BstBAI	YACGTR	1 cut(s)	367
BstC8I	GCNNGC	1 cut(s)	572
BstEII	GGTNACC	1 cut(s)	493
BstF5I	GGATG	2 cut(s)	207, 855
BstFNI	CGCG	2 cut(s)	378, 581
BstHHI	GCGC	2 cut(s)	344, 380
BstKTI	GATC	6 cut(s)	317, 324, 465, 481, 640, 708
BstMAI	GTCTC	3 cut(s)	176, 493, 880
BstMBI	GATC	6 cut(s)	314, 321, 462, 478, 637, 705
BstMCI	CGRYCG	1 cut(s)	534
BstMWI	GCNNNNNNNGC	2 cut(s)	377, 652
BstNI	CCWGG	3 cut(s)	334, 356, 544
BstPI	GGTNACC	1 cut(s)	493
BstSCI	CCNGG	5 cut(s)	317, 332, 354, 407, 542
BstSFI	CTRYAG	1 cut(s)	644
BstUI	CGCG	2 cut(s)	378, 581
BstV1I	GCAGC	2 cut(s)	630, 786
BstX2I	RGATCY	5 cut(s)	314, 321, 462, 478, 637
BstYI	RGATCY	5 cut(s)	314, 321, 462, 478, 637
BsuI	GTATCC	2 cut(s)	615, 723
BsuRI	GGCC	7 cut(s)	279, 359, 371, 407, 574, 698, 794
BtsCI	GGATG	2 cut(s)	207, 855
BtsIMutI	CAGTG	1 cut(s)	392
Cac8I	GCNNGC	1 cut(s)	572
CaiI	CAGNNNCTG	1 cut(s)	339
CfoI	GCGC	2 cut(s)	344, 380
Cfr10I	RCCGGY	1 cut(s)	529
Cfr13I	GGNCC	3 cut(s)	358, 547, 572
CseI	GACGC	1 cut(s)	296
Csp6I	GTAC	2 cut(s)	374, 664
CviAII	CATG	3 cut(s)	75, 551, 728
CviQI	GTAC	2 cut(s)	374, 664
DpnI	GATC	6 cut(s)	316, 323, 464, 480, 639, 707
DpnII	GATC	6 cut(s)	314, 321, 462, 478, 637, 705
DraIII	CACNNNGTG	1 cut(s)	367
DriI	GACNNNNNGTC	1 cut(s)	750
EaeI	YGGCCR	3 cut(s)	277, 369, 405
Eam1104I	CTCTTC	9 cut(s)	116, 135, 181, 186, 871, 876, 922, 947, 966
Eam1105I	GACNNNNNGTC	1 cut(s)	750
EarI	CTCTTC	9 cut(s)	116, 135, 181, 186, 871, 876, 922, 947, 966
Eco130I	CCWWGG	1 cut(s)	789
Eco147I	AGGCCT	1 cut(s)	794
Eco31I	GGTCTC	1 cut(s)	493
Eco47I	GGWCC	1 cut(s)	547
Eco72I	CACGTG	1 cut(s)	367
Eco88I	CYCGRG	1 cut(s)	470
Eco91I	GGTNACC	1 cut(s)	493
EcoO65I	GGTNACC	1 cut(s)	493
EcoRII	CCWGG	3 cut(s)	332, 354, 542
EcoT14I	CCWWGG	1 cut(s)	789
ErhI	CCWWGG	1 cut(s)	789
Esp3I	CGTCTC	2 cut(s)	176, 880
FaeI	CATG	3 cut(s)	78, 554, 731
FaiI	YATR	8 cut(s)	67, 76, 552, 599, 669, 722, 729, 738
FalI	AAGNNNNNCTT	2 cut(s)	29, 61
FaqI	GGGAC	2 cut(s)	350, 560
FatI	CATG	3 cut(s)	74, 550, 727
FauI	CCCGC	1 cut(s)	563
FblI	GTMKAC	1 cut(s)	539
Fnu4HI	GCNGC	3 cut(s)	439, 644, 775
FokI	GGATG	2 cut(s)	194, 862
Fsp4HI	GCNGC	3 cut(s)	439, 644, 775
FspBI	CTAG	1 cut(s)	329
GlaI	GCGC	2 cut(s)	343, 379
GluI	GCNGC	3 cut(s)	439, 644, 775
HaeIII	GGCC	7 cut(s)	279, 359, 371, 407, 574, 698, 794
HapII	CCGG	6 cut(s)	319, 345, 408, 466, 530, 608
HgaI	GACGC	1 cut(s)	296
HhaI	GCGC	2 cut(s)	344, 380
Hin1I	GRCGYC	1 cut(s)	288
Hin1II	CATG	3 cut(s)	78, 554, 731
Hin6I	GCGC	2 cut(s)	342, 378
HinP1I	GCGC	2 cut(s)	342, 378
HincII	GTYRAC	3 cut(s)	31, 42, 540
HindII	GTYRAC	3 cut(s)	31, 42, 540
HinfI	GANTC	1 cut(s)	455
HpaII	CCGG	6 cut(s)	319, 345, 408, 466, 530, 608
HphI	GGTGA	6 cut(s)	210, 229, 259, 505, 832, 851
Hpy166II	GTNNAC	4 cut(s)	31, 42, 540, 586
Hpy188I	TCNGA	2 cut(s)	393, 460
Hpy188III	TCNNGA	1 cut(s)	472
Hpy8I	GTNNAC	4 cut(s)	31, 42, 540, 586
Hpy99I	CGWCG	3 cut(s)	290, 616, 751
HpyAV	CCTTC	6 cut(s)	146, 280, 469, 511, 915, 940
HpyCH4III	ACNGT	3 cut(s)	397, 429, 616
HpyCH4IV	ACGT	2 cut(s)	33, 366
HpyCH4V	TGCA	1 cut(s)	646
HpyF10VI	GCNNNNNNNGC	2 cut(s)	377, 652
HpySE526I	ACGT	2 cut(s)	33, 366
Hsp92I	GRCGYC	1 cut(s)	288
Hsp92II	CATG	3 cut(s)	78, 554, 731
HspAI	GCGC	2 cut(s)	342, 378
Kzo9I	GATC	6 cut(s)	314, 321, 462, 478, 637, 705
LmnI	GCTCC	2 cut(s)	445, 632
Lsp1109I	GCAGC	2 cut(s)	630, 786
MaeI	CTAG	1 cut(s)	329
MaeII	ACGT	2 cut(s)	33, 366
MaeIII	GTNAC	1 cut(s)	493
MalI	GATC	6 cut(s)	316, 323, 464, 480, 639, 707
MbiI	CCGCTC	2 cut(s)	570, 635
MboI	GATC	6 cut(s)	314, 321, 462, 478, 637, 705
MfeI	CAATTG	1 cut(s)	51
MflI	RGATCY	5 cut(s)	314, 321, 462, 478, 637
MhlI	GDGCHC	1 cut(s)	23
MluCI	AATT	2 cut(s)	51, 670
MlyI	GAGTC	1 cut(s)	464
MmeI	TCCRAC	3 cut(s)	371, 448, 740
MspA1I	CMGCKG	2 cut(s)	26, 643
MspI	CCGG	6 cut(s)	319, 345, 408, 466, 530, 608
MspR9I	CCNGG	5 cut(s)	319, 334, 356, 409, 544
MunI	CAATTG	1 cut(s)	51
MvaI	CCWGG	3 cut(s)	334, 356, 544
MvnI	CGCG	2 cut(s)	378, 581
MwoI	GCNNNNNNNGC	2 cut(s)	377, 652
NciI	CCSGG	2 cut(s)	319, 409
NdeII	GATC	6 cut(s)	314, 321, 462, 478, 637, 705
NlaIII	CATG	3 cut(s)	78, 554, 731
NlaIV	GGNNCC	5 cut(s)	323, 353, 480, 548, 639
NmeAIII	GCCGAG	1 cut(s)	255
NmuCI	GTSAC	1 cut(s)	493
PaeR7I	CTCGAG	1 cut(s)	470
PceI	AGGCCT	1 cut(s)	794
PcsI	WCGNNNNNNNCGW	1 cut(s)	282
Pfl23II	CGTACG	1 cut(s)	373
PflFI	GACNNNGTC	1 cut(s)	290
PflMI	CCANNNNNTGG	2 cut(s)	367, 556
PfoI	TCCNGGA	1 cut(s)	317
PkrI	GCNGC	3 cut(s)	440, 645, 776
PleI	GAGTC	1 cut(s)	463
PmaCI	CACGTG	1 cut(s)	367
PmlI	CACGTG	1 cut(s)	367
PpsI	GAGTC	1 cut(s)	463
Ppu21I	YACGTR	1 cut(s)	367
Psp6I	CCWGG	3 cut(s)	332, 354, 542
PspCI	CACGTG	1 cut(s)	367
PspEI	GGTNACC	1 cut(s)	493
PspGI	CCWGG	3 cut(s)	332, 354, 542
PspLI	CGTACG	1 cut(s)	373
PspN4I	GGNNCC	5 cut(s)	323, 353, 480, 548, 639
PspPI	GGNCC	3 cut(s)	358, 547, 572
PstI	CTGCAG	1 cut(s)	648
PstNI	CAGNNNCTG	1 cut(s)	339
PsuI	RGATCY	5 cut(s)	314, 321, 462, 478, 637
PsyI	GACNNNGTC	1 cut(s)	290
PvuII	CAGCTG	1 cut(s)	26
RsaI	GTAC	2 cut(s)	375, 665
RsaNI	GTAC	2 cut(s)	374, 664
SalI	GTCGAC	1 cut(s)	538
SatI	GCNGC	3 cut(s)	439, 644, 775
Sau3AI	GATC	6 cut(s)	314, 321, 462, 478, 637, 705
Sau96I	GGNCC	3 cut(s)	358, 547, 572
SchI	GAGTC	1 cut(s)	464
ScrFI	CCNGG	5 cut(s)	319, 334, 356, 409, 544
SduI	GDGCHC	1 cut(s)	23
SfcI	CTRYAG	1 cut(s)	644
Sfr274I	CTCGAG	1 cut(s)	470
SinI	GGWCC	1 cut(s)	547
SlaI	CTCGAG	1 cut(s)	470
SmlI	CTYRAG	3 cut(s)	470, 565, 800
SmoI	CTYRAG	3 cut(s)	470, 565, 800
Sse9I	AATT	2 cut(s)	51, 670
SseBI	AGGCCT	1 cut(s)	794
SsiI	CCGC	5 cut(s)	438, 570, 581, 635, 641
SspMI	CTAG	1 cut(s)	329
StuI	AGGCCT	1 cut(s)	794
StyD4I	CCNGG	5 cut(s)	317, 332, 354, 407, 542
StyI	CCWWGG	1 cut(s)	789
TaaI	ACNGT	3 cut(s)	397, 429, 616
TaiI	ACGT	2 cut(s)	36, 369
TaqI	TCGA	3 cut(s)	471, 539, 708
TasI	AATT	2 cut(s)	51, 670
TauI	GCSGC	1 cut(s)	441
TscAI	CASTG	1 cut(s)	392
TseFI	GTSAC	1 cut(s)	493
TseI	GCWGC	2 cut(s)	643, 774
Tsp45I	GTSAC	1 cut(s)	493
TspDTI	ATGAA	2 cut(s)	17, 716
TspGWI	ACGGA	1 cut(s)	779
TspRI	CASTG	1 cut(s)	392
Tth111I	GACNNNGTC	1 cut(s)	290
Van91I	CCANNNNNTGG	2 cut(s)	367, 556
VpaK11BI	GGWCC	1 cut(s)	547
XhoI	CTCGAG	1 cut(s)	470
XmiI	GTMKAC	1 cut(s)	539
XspI	CTAG	1 cut(s)	329

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.