Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0004868

Physical Location & Seq

Genomic Coordinates Forward (+)

34570567 .. 34572438

Gene Structure 1872 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG225700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGCTGACAGATTCTTGCTTGGAAGGACAGCTGTCTCAAGATGATGGTACTGAATTGGTACGCTTGGCTTCACGATGTTTACAATCTGAACCCCGAGAGCGACCAAATTCTAAGTCATTAGTTGCTGCTTTGACTACTCTTCAGAAAGAAACTGAGATTCCTTCTCATGTTTTGATGGGTATCCCGCACACTAACTCCTGCTCTCCTCTTTCACCACTTGGTGAAGCCTGCTCCAGAAAGGATTTGACTGCAATCCATGAGATCCTAGAGAATATCAGCTATAAAGATGATGGAATGACAAATGAGCTCTCGTTCCAAATGTGGACGGACCAAATGCAGGAAACATTAGATTCAAAGAAAAATGGGGATTCTGCTTTTAAGCAGAAGGACTTCAGAACTGCAATCGAATGTTATTCACAGTTCATTGATGTTGGAAACATGGTTTCTCCCACAATTTTTTCCCGGCGTAGTTTGTGTTATCTCATGGATGAGATGCCTCAGGAGGCTCTAAATGATGCAATGCAAGCTCAAGTAATTTCCCCAATATGGCACATTGCATCTTATCTTCAGGCTGCTGCGCTTTCTGCACTCGGAATGGAGACTGAGGCACAATCAGCACTGAAGGAGGGTACTCTGCTTGAAGCCAAAAGGAACACTGCAAGTGGACACAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009506 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009987 GO:0010033 GO:0014070 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0030054 GO:0032870 GO:0033993 GO:0036211 GO:0038023 GO:0042221 GO:0043170 GO:0043401 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048545 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0060089 GO:0065007 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

224

Amino Acids

24.81

Weight (kDa)

4.9

Isoelectric Point (pI)

62.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_BSK1_C	PF25575	75 - 191	3.3e-62	Serine/threonine-protein kinase BSK1-like, TPR repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004868)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g14100
malus_domestica	MD01G1056900.v1.1 MD14G1186200.v1.1 MD14G1186400.v1.1 MD14G1186600.v1.1
pyrus_communis	pycom01g08300 pycom01g08310 pycom01g08390 pycom01g08420 pycom01g08480 pycom01g08650 pycom01g08680 pycom01g08710 pycom02g23240
rosa_chinensis	RchiOBHm_Chr1g0324601 RchiOBHm_Chr1g0354681 RchiOBHm_Chr1g0354861
rosa_laevigata	RLG00000028186
rosa_multiflora	Rmu_sc0003940.1_g000003 Rmu_sc0006632.1_g000017
rosa_roxburghii	Rroxscaffold_4G00325320
rosa_rugosa	Rorug01G0244200 Rorug01G0244200 Rorug01G0244300
rosa_samantha	Rh1AG255200 Rh1AG256400 Rh1BG225700 Rh1CG239700
rosa_wichuraiana	Rw1G022330 Rw1G022370 Rw1G022400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	185
AclWI	GGATC	1 cut(s)	256
AcsI	RAATTY	1 cut(s)	106
AcuI	CTGAAG	4 cut(s)	125, 376, 551, 641
AdeI	CACNNNGTG	1 cut(s)	221
AfaI	GTAC	3 cut(s)	49, 60, 631
AfiI	CCNNNNNNNGG	2 cut(s)	337, 546
AgsI	TTSAA	2 cut(s)	354, 641
AluBI	AGCT	4 cut(s)	31, 279, 307, 527
AluI	AGCT	4 cut(s)	31, 279, 307, 527
Alw21I	GWGCWC	1 cut(s)	309
Alw26I	GTCTC	2 cut(s)	39, 593
AlwI	GGATC	1 cut(s)	256
Ama87I	CYCGRG	1 cut(s)	93
ApeKI	GCWGC	3 cut(s)	125, 572, 575
ApoI	RAATTY	1 cut(s)	106
ArsI	GACNNNNNNTTYG	2 cut(s)	98, 130
Asp700I	GAANNNNTTC	1 cut(s)	389
AspLEI	GCGC	1 cut(s)	580
AspS9I	GGNCC	1 cut(s)	328
AsuC2I	CCSGG	1 cut(s)	463
AsuHPI	GGTGA	2 cut(s)	204, 233
AvaI	CYCGRG	1 cut(s)	93
AvaII	GGWCC	1 cut(s)	328
AxyI	CCTNAGG	1 cut(s)	498
BanII	GRGCYC	1 cut(s)	309
Bbv12I	GWGCWC	1 cut(s)	309
BbvI	GCAGC	3 cut(s)	112, 559, 562
BccI	CCATC	3 cut(s)	38, 169, 284
BciVI	GTATCC	1 cut(s)	191
BcnI	CCSGG	1 cut(s)	463
BcoDI	GTCTC	2 cut(s)	39, 593
BfaI	CTAG	1 cut(s)	266
BfuI	GTATCC	1 cut(s)	191
BisI	GCNGC	3 cut(s)	126, 573, 576
BlsI	GCNGC	3 cut(s)	127, 574, 577
Bme1390I	CCNGG	1 cut(s)	463
Bme18I	GGWCC	1 cut(s)	328
BmeT110I	CYCGRG	1 cut(s)	93
BmgT120I	GGNCC	1 cut(s)	328
BmrFI	CCNGG	1 cut(s)	463
BmsI	GCATC	3 cut(s)	483, 505, 566
BoxI	GACNNNNGTC	1 cut(s)	31
BpmI	CTGGAG	1 cut(s)	217
BpuEI	CTTGAG	2 cut(s)	21, 513
BpuMI	CCSGG	1 cut(s)	463
BsaBI	GATNNNNATC	1 cut(s)	179
BsaXI	ACNNNNNCTCC	2 cut(s)	179, 209
Bsc4I	CCNNNNNNNGG	2 cut(s)	337, 546
Bse21I	CCTNAGG	1 cut(s)	498
Bse3DI	GCAATG	2 cut(s)	525, 552
Bse8I	GATNNNNATC	1 cut(s)	179
BseGI	GGATG	1 cut(s)	493
BseJI	GATNNNNATC	1 cut(s)	179
BseLI	CCNNNNNNNGG	2 cut(s)	337, 546
BseMI	GCAATG	2 cut(s)	525, 552
BseMII	CTCAG	3 cut(s)	144, 512, 594
BseRI	GAGGAG	1 cut(s)	195
BseXI	GCAGC	3 cut(s)	112, 559, 562
BsgI	GTGCAG	1 cut(s)	570
BsiHKAI	GWGCWC	1 cut(s)	309
BsiHKCI	CYCGRG	1 cut(s)	93
BsiSI	CCGG	1 cut(s)	463
BslI	CCNNNNNNNGG	2 cut(s)	337, 546
BsmAI	GTCTC	2 cut(s)	39, 593
BsoBI	CYCGRG	1 cut(s)	93
Bsp1286I	GDGCHC	1 cut(s)	309
Bsp143I	GATC	1 cut(s)	261
BspACI	CCGC	1 cut(s)	185
BspCNI	CTCAG	3 cut(s)	145, 511, 595
BspPI	GGATC	1 cut(s)	256
BsrDI	GCAATG	2 cut(s)	525, 552
BssMI	GATC	1 cut(s)	261
Bst4CI	ACNGT	1 cut(s)	420
Bst6I	CTCTTC	1 cut(s)	144
BstC8I	GCNNGC	2 cut(s)	229, 525
BstDEI	CTNAG	4 cut(s)	111, 153, 498, 603
BstF5I	GGATG	1 cut(s)	493
BstHHI	GCGC	1 cut(s)	580
BstKTI	GATC	1 cut(s)	264
BstMAI	GTCTC	2 cut(s)	39, 593
BstMBI	GATC	1 cut(s)	261
BstMWI	GCNNNNNNNGC	3 cut(s)	524, 584, 614
BstPAI	GACNNNNGTC	1 cut(s)	31
BstSCI	CCNGG	1 cut(s)	461
BstV1I	GCAGC	3 cut(s)	112, 559, 562
BstX2I	RGATCY	1 cut(s)	261
BstYI	RGATCY	1 cut(s)	261
Bsu36I	CCTNAGG	1 cut(s)	498
BsuI	GTATCC	1 cut(s)	191
BtsCI	GGATG	1 cut(s)	493
BtsI	GCAGTG	1 cut(s)	654
BtsIMutI	CAGTG	2 cut(s)	617, 654
Cac8I	GCNNGC	2 cut(s)	229, 525
CfoI	GCGC	1 cut(s)	580
Cfr13I	GGNCC	1 cut(s)	328
Csp6I	GTAC	3 cut(s)	48, 59, 630
CviAII	CATG	4 cut(s)	167, 257, 439, 484
CviJI	RGCY	9 cut(s)	31, 68, 227, 279, 307, 506, 527, 572, 644
CviKI_1	RGCY	9 cut(s)	31, 68, 227, 279, 307, 506, 527, 572, 644
CviQI	GTAC	3 cut(s)	48, 59, 630
DdeI	CTNAG	4 cut(s)	111, 153, 498, 603
DpnI	GATC	1 cut(s)	263
DpnII	GATC	1 cut(s)	261
DraIII	CACNNNGTG	1 cut(s)	221
Eam1104I	CTCTTC	1 cut(s)	144
EarI	CTCTTC	1 cut(s)	144
Ecl136II	GAGCTC	1 cut(s)	307
Eco24I	GRGCYC	1 cut(s)	309
Eco47I	GGWCC	1 cut(s)	328
Eco53kI	GAGCTC	1 cut(s)	307
Eco57I	CTGAAG	4 cut(s)	125, 376, 551, 641
Eco81I	CCTNAGG	1 cut(s)	498
Eco88I	CYCGRG	1 cut(s)	93
EcoICRI	GAGCTC	1 cut(s)	307
EcoT38I	GRGCYC	1 cut(s)	309
FaeI	CATG	4 cut(s)	170, 260, 442, 487
FaiI	YATR	6 cut(s)	168, 258, 282, 440, 485, 547
FatI	CATG	4 cut(s)	166, 256, 438, 483
FauI	CCCGC	1 cut(s)	192
Fnu4HI	GCNGC	3 cut(s)	126, 573, 576
FokI	GGATG	1 cut(s)	500
FriOI	GRGCYC	1 cut(s)	309
Fsp4HI	GCNGC	3 cut(s)	126, 573, 576
FspBI	CTAG	1 cut(s)	266
GlaI	GCGC	1 cut(s)	579
GluI	GCNGC	3 cut(s)	126, 573, 576
GsuI	CTGGAG	1 cut(s)	217
HapII	CCGG	1 cut(s)	463
HhaI	GCGC	1 cut(s)	580
Hin1II	CATG	4 cut(s)	170, 260, 442, 487
Hin6I	GCGC	1 cut(s)	578
HinP1I	GCGC	1 cut(s)	578
HinfI	GANTC	4 cut(s)	11, 157, 350, 368
HpaII	CCGG	1 cut(s)	463
HphI	GGTGA	2 cut(s)	204, 233
Hpy166II	GTNNAC	3 cut(s)	80, 324, 665
Hpy188I	TCNGA	4 cut(s)	88, 144, 395, 593
Hpy188III	TCNNGA	4 cut(s)	38, 72, 234, 500
Hpy8I	GTNNAC	3 cut(s)	80, 324, 665
HpyAV	CCTTC	4 cut(s)	17, 171, 379, 616
HpyCH4III	ACNGT	1 cut(s)	420
HpyCH4V	TGCA	8 cut(s)	251, 337, 401, 518, 523, 557, 587, 659
HpyF10VI	GCNNNNNNNGC	3 cut(s)	524, 584, 614
HpyF3I	CTNAG	4 cut(s)	111, 153, 498, 603
Hsp92II	CATG	4 cut(s)	170, 260, 442, 487
HspAI	GCGC	1 cut(s)	578
Kzo9I	GATC	1 cut(s)	261
LmnI	GCTCC	1 cut(s)	236
LpnPI	CCDG	7 cut(s)	211, 241, 247, 323, 476, 485, 554
Lsp1109I	GCAGC	3 cut(s)	112, 559, 562
LweI	GCATC	3 cut(s)	483, 505, 566
MaeI	CTAG	1 cut(s)	266
MalI	GATC	1 cut(s)	263
MboI	GATC	1 cut(s)	261
MboII	GAAGA	2 cut(s)	131, 557
MflI	RGATCY	1 cut(s)	261
MhlI	GDGCHC	1 cut(s)	309
MluCI	AATT	4 cut(s)	53, 106, 453, 534
MmeI	TCCRAC	1 cut(s)	412
MnlI	CCTC	5 cut(s)	216, 496, 507, 598, 619
MroXI	GAANNNNTTC	1 cut(s)	389
MseI	TTAA	1 cut(s)	378
MspA1I	CMGCKG	1 cut(s)	31
MspI	CCGG	1 cut(s)	463
MspR9I	CCNGG	1 cut(s)	463
MwoI	GCNNNNNNNGC	3 cut(s)	524, 584, 614
NciI	CCSGG	1 cut(s)	463
NdeII	GATC	1 cut(s)	261
NlaIII	CATG	4 cut(s)	170, 260, 442, 487
PdmI	GAANNNNTTC	1 cut(s)	389
PfeI	GAWTC	4 cut(s)	11, 157, 350, 368
PkrI	GCNGC	3 cut(s)	127, 574, 577
PshAI	GACNNNNGTC	1 cut(s)	31
Psp124BI	GAGCTC	1 cut(s)	309
PspPI	GGNCC	1 cut(s)	328
PsuI	RGATCY	1 cut(s)	261
PvuII	CAGCTG	1 cut(s)	31
RsaI	GTAC	3 cut(s)	49, 60, 631
RsaNI	GTAC	3 cut(s)	48, 59, 630
SacI	GAGCTC	1 cut(s)	309
SaqAI	TTAA	1 cut(s)	378
SatI	GCNGC	3 cut(s)	126, 573, 576
Sau3AI	GATC	1 cut(s)	261
Sau96I	GGNCC	1 cut(s)	328
ScrFI	CCNGG	1 cut(s)	463
SduI	GDGCHC	1 cut(s)	309
SetI	ASST	4 cut(s)	33, 281, 309, 529
SfaNI	GCATC	3 cut(s)	483, 505, 566
SinI	GGWCC	1 cut(s)	328
SmlI	CTYRAG	2 cut(s)	36, 528
SmoI	CTYRAG	2 cut(s)	36, 528
Sse9I	AATT	4 cut(s)	53, 106, 453, 534
SsiI	CCGC	1 cut(s)	185
SspMI	CTAG	1 cut(s)	266
SstI	GAGCTC	1 cut(s)	309
StyD4I	CCNGG	1 cut(s)	461
TaaI	ACNGT	1 cut(s)	420
TaqI	TCGA	1 cut(s)	405
TasI	AATT	4 cut(s)	53, 106, 453, 534
TfiI	GAWTC	4 cut(s)	11, 157, 350, 368
Tru1I	TTAA	1 cut(s)	378
Tru9I	TTAA	1 cut(s)	378
TscAI	CASTG	2 cut(s)	624, 661
TseI	GCWGC	3 cut(s)	125, 572, 575
TspDTI	ATGAA	1 cut(s)	412
TspGWI	ACGGA	1 cut(s)	341
TspRI	CASTG	2 cut(s)	624, 661
VpaK11BI	GGWCC	1 cut(s)	328
XapI	RAATTY	1 cut(s)	106
XmnI	GAANNNNTTC	1 cut(s)	389
XspI	CTAG	1 cut(s)	266

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.