Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0004868

Physical Location & Seq

Genomic Coordinates Forward (+)

9387351 .. 9387653

Gene Structure 303 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g08480.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

ATGGTTTCTCGAACAATTTTTGCCCAGCGTAGTTTGTCTTATCTCATGAGTGACAAGCCTCAGGAAGCTATAAACGATGCAATGCAAGCACAAGTAGTTTCCCCAGTTTGGCACTTGCATGTTATCTTCAGGCTGATGCCCTTTCAGCCCTTGGAATGGATGGTGAAGCTCATGCAGCACTTACGGAGGGTACTATGCTTGAATCCTAAAGGAGCAAAGCAGCTGGACAGAAGTGAAAATCTAGGCCGGTCAACAAGGTGCCTAGTTTGCCACTTCTCTCGGTTTGGCTCTCAGCTTATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009506 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009987 GO:0010033 GO:0014070 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0030054 GO:0032870 GO:0033993 GO:0036211 GO:0038023 GO:0042221 GO:0043170 GO:0043401 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048545 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0060089 GO:0065007 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

101

Amino Acids

11.67

Weight (kDa)

10.19

Isoelectric Point (pI)

65.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_BSK1_C	PF25575	1 - 40	3.5e-14	Serine/threonine-protein kinase BSK1-like, TPR repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004868)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g14100
malus_domestica	MD01G1056900.v1.1 MD14G1186200.v1.1 MD14G1186400.v1.1 MD14G1186600.v1.1
pyrus_communis	pycom01g08300 pycom01g08310 pycom01g08390 pycom01g08420 pycom01g08480 pycom01g08650 pycom01g08680 pycom01g08710 pycom02g23240
rosa_chinensis	RchiOBHm_Chr1g0324601 RchiOBHm_Chr1g0354681 RchiOBHm_Chr1g0354861
rosa_laevigata	RLG00000028186
rosa_multiflora	Rmu_sc0003940.1_g000003 Rmu_sc0006632.1_g000017
rosa_roxburghii	Rroxscaffold_4G00325320
rosa_rugosa	Rorug01G0244200 Rorug01G0244200 Rorug01G0244300
rosa_samantha	Rh1AG255200 Rh1AG256400 Rh1BG225700 Rh1CG239700
rosa_wichuraiana	Rw1G022330 Rw1G022370 Rw1G022400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	258
AcuI	CTGAAG	1 cut(s)	112
AfaI	GTAC	1 cut(s)	192
AfiI	CCNNNNNNNGG	2 cut(s)	108, 156
AgsI	TTSAA	1 cut(s)	202
AluBI	AGCT	4 cut(s)	68, 169, 223, 295
AluI	AGCT	4 cut(s)	68, 169, 223, 295
AoxI	GGCC	1 cut(s)	244
ApeKI	GCWGC	2 cut(s)	175, 220
AsuHPI	GGTGA	1 cut(s)	175
AxyI	CCTNAGG	1 cut(s)	60
BanI	GGYRCC	1 cut(s)	258
BbvI	GCAGC	2 cut(s)	187, 232
BccI	CCATC	1 cut(s)	154
BfaI	CTAG	2 cut(s)	242, 263
BisI	GCNGC	2 cut(s)	176, 221
BlsI	GCNGC	2 cut(s)	177, 222
BmiI	GGNNCC	1 cut(s)	260
BmrI	ACTGGG	1 cut(s)	98
BmsI	GCATC	2 cut(s)	67, 126
BmuI	ACTGGG	1 cut(s)	98
BsaJI	CCNNGG	1 cut(s)	150
Bsc4I	CCNNNNNNNGG	2 cut(s)	108, 156
Bse118I	RCCGGY	1 cut(s)	246
Bse1I	ACTGG	1 cut(s)	104
Bse21I	CCTNAGG	1 cut(s)	60
Bse3DI	GCAATG	1 cut(s)	87
BseDI	CCNNGG	1 cut(s)	150
BseGI	GGATG	1 cut(s)	165
BseLI	CCNNNNNNNGG	2 cut(s)	108, 156
BseMI	GCAATG	1 cut(s)	87
BseMII	CTCAG	1 cut(s)	74
BseNI	ACTGG	1 cut(s)	104
BseXI	GCAGC	2 cut(s)	187, 232
BseYI	CCCAGC	1 cut(s)	24
BshFI	GGCC	1 cut(s)	246
BshNI	GGYRCC	1 cut(s)	258
BsiSI	CCGG	1 cut(s)	247
BslI	CCNNNNNNNGG	2 cut(s)	108, 156
BsnI	GGCC	1 cut(s)	246
BspANI	GGCC	1 cut(s)	246
BspCNI	CTCAG	1 cut(s)	73
BspHI	TCATGA	1 cut(s)	45
BspLI	GGNNCC	1 cut(s)	260
BspT107I	GGYRCC	1 cut(s)	258
BsrDI	GCAATG	1 cut(s)	87
BsrFI	RCCGGY	1 cut(s)	246
BsrI	ACTGG	1 cut(s)	104
BssAI	RCCGGY	1 cut(s)	246
BssECI	CCNNGG	1 cut(s)	150
BssT1I	CCWWGG	1 cut(s)	150
BstC8I	GCNNGC	1 cut(s)	87
BstDEI	CTNAG	2 cut(s)	60, 291
BstF5I	GGATG	1 cut(s)	165
BstMWI	GCNNNNNNNGC	4 cut(s)	86, 145, 175, 267
BstNSI	RCATGY	1 cut(s)	122
BstV1I	GCAGC	2 cut(s)	187, 232
Bsu36I	CCTNAGG	1 cut(s)	60
BsuRI	GGCC	1 cut(s)	246
BtsCI	GGATG	1 cut(s)	165
Cac8I	GCNNGC	1 cut(s)	87
CciI	TCATGA	1 cut(s)	45
Cfr10I	RCCGGY	1 cut(s)	246
Csp6I	GTAC	1 cut(s)	191
CviAII	CATG	3 cut(s)	46, 119, 172
CviJI	RGCY	9 cut(s)	58, 68, 133, 148, 169, 223, 246, 288, 295
CviKI_1	RGCY	9 cut(s)	58, 68, 133, 148, 169, 223, 246, 288, 295
CviQI	GTAC	1 cut(s)	191
DdeI	CTNAG	2 cut(s)	60, 291
Eco130I	CCWWGG	1 cut(s)	150
Eco57I	CTGAAG	1 cut(s)	112
Eco81I	CCTNAGG	1 cut(s)	60
EcoT14I	CCWWGG	1 cut(s)	150
ErhI	CCWWGG	1 cut(s)	150
FaeI	CATG	3 cut(s)	49, 122, 175
FaiI	YATR	7 cut(s)	47, 71, 120, 173, 196, 299, 301
FatI	CATG	3 cut(s)	45, 118, 171
Fnu4HI	GCNGC	2 cut(s)	176, 221
FokI	GGATG	1 cut(s)	172
Fsp4HI	GCNGC	2 cut(s)	176, 221
FspBI	CTAG	2 cut(s)	242, 263
GluI	GCNGC	2 cut(s)	176, 221
GsaI	CCCAGC	1 cut(s)	28
HaeIII	GGCC	1 cut(s)	246
HapII	CCGG	1 cut(s)	247
Hin1II	CATG	3 cut(s)	49, 122, 175
HincII	GTYRAC	1 cut(s)	252
HindII	GTYRAC	1 cut(s)	252
HinfI	GANTC	1 cut(s)	202
HpaII	CCGG	1 cut(s)	247
HphI	GGTGA	1 cut(s)	175
Hpy166II	GTNNAC	1 cut(s)	252
Hpy188III	TCNNGA	3 cut(s)	9, 46, 62
Hpy8I	GTNNAC	1 cut(s)	252
HpyCH4V	TGCA	4 cut(s)	80, 85, 118, 175
HpyF10VI	GCNNNNNNNGC	4 cut(s)	86, 145, 175, 267
HpyF3I	CTNAG	2 cut(s)	60, 291
Hsp92II	CATG	3 cut(s)	49, 122, 175
LmnI	GCTCC	1 cut(s)	212
LpnPI	CCDG	6 cut(s)	38, 47, 115, 117, 209, 260
Lsp1109I	GCAGC	2 cut(s)	187, 232
LweI	GCATC	2 cut(s)	67, 126
MaeI	CTAG	2 cut(s)	242, 263
MaeIII	GTNAC	1 cut(s)	50
MboII	GAAGA	1 cut(s)	118
MluCI	AATT	1 cut(s)	15
MnlI	CCTC	2 cut(s)	69, 180
MslI	CAYNNNNRTG	1 cut(s)	117
MspA1I	CMGCKG	1 cut(s)	223
MspI	CCGG	1 cut(s)	247
MwoI	GCNNNNNNNGC	4 cut(s)	86, 145, 175, 267
NlaIII	CATG	3 cut(s)	49, 122, 175
NlaIV	GGNNCC	1 cut(s)	260
NmuCI	GTSAC	1 cut(s)	50
NspI	RCATGY	1 cut(s)	122
PagI	TCATGA	1 cut(s)	45
PfeI	GAWTC	1 cut(s)	202
PkrI	GCNGC	2 cut(s)	177, 222
PspFI	CCCAGC	1 cut(s)	24
PspN4I	GGNNCC	1 cut(s)	260
PvuII	CAGCTG	1 cut(s)	223
RsaI	GTAC	1 cut(s)	192
RsaNI	GTAC	1 cut(s)	191
RseI	CAYNNNNRTG	1 cut(s)	117
SatI	GCNGC	2 cut(s)	176, 221
SetI	ASST	5 cut(s)	70, 171, 225, 260, 297
SfaNI	GCATC	2 cut(s)	67, 126
SmiMI	CAYNNNNRTG	1 cut(s)	117
Sse9I	AATT	1 cut(s)	15
SspMI	CTAG	2 cut(s)	242, 263
StyI	CCWWGG	1 cut(s)	150
TaqI	TCGA	1 cut(s)	10
TasI	AATT	1 cut(s)	15
TfiI	GAWTC	1 cut(s)	202
TseFI	GTSAC	1 cut(s)	50
TseI	GCWGC	2 cut(s)	175, 220
Tsp45I	GTSAC	1 cut(s)	50
TspGWI	ACGGA	1 cut(s)	199
XceI	RCATGY	1 cut(s)	122
XspI	CTAG	2 cut(s)	242, 263

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.