FvH4_7g17070

Belongs to the yippee family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0000903
Physical Location & Seq
Forward (+)
14601965 .. 14603518
1554 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g17070.t2

Sequence Viewer

Length: 324 bp
ATGGCTGATTTGGCTTGGCGAAGGTTATACTGCTGCTACAAGTGCCAGAACCATATATGCTGTCATGATGATATTCTCAATAAATATTATCAGACTAGAAGTGGCAGAAGAGCCTTTCTGTTCGCTCATGCTATAAATGTGTTTCAAGGGCCTAAAGAGGACCGGCAACTCATCACTGGCCGTTACACAGTTGCTGATGTATACTGCAGCGATTGCAGCGTGGTGTTGGGCTGCAAATATGTAAAAGCTTATGATGAGTTGCACAAGTACAAAGAAGGGAAATATTGCATTGCAATGTTCAACATTGTCAAGGCAAACTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Yippee-Mis18

Protein Analysis

108

Amino Acids

12.62

Weight (kDa)

8.85

Isoelectric Point (pI)

40.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Yippee-Mis18 PF03226 37 - 79 3.5e-06 Yippee zinc-binding/DNA-binding /Mis18, centromere assembly
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 201
AcoI YGGCCR 1 cut(s) 178
AfaI GTAC 1 cut(s) 269
AgsI TTSAA 2 cut(s) 146, 301
AluBI AGCT 1 cut(s) 248
AluI AGCT 1 cut(s) 248
AlwNI CAGNNNCTG 1 cut(s) 194
AoxI GGCC 2 cut(s) 149, 178
ApeKI GCWGC 4 cut(s) 33, 207, 216, 231
AspS9I GGNCC 2 cut(s) 149, 160
AvaII GGWCC 1 cut(s) 160
BbvI GCAGC 4 cut(s) 20, 218, 219, 228
BceAI ACGGC 1 cut(s) 165
BfaI CTAG 1 cut(s) 96
BfmI CTRYAG 1 cut(s) 205
BisI GCNGC 4 cut(s) 34, 208, 217, 232
BlsI GCNGC 4 cut(s) 35, 209, 218, 233
Bme18I GGWCC 1 cut(s) 160
BmgT120I GGNCC 2 cut(s) 149, 160
Bse118I RCCGGY 1 cut(s) 162
Bse1I ACTGG 2 cut(s) 181, 323
Bse3DI GCAATG 2 cut(s) 288, 300
BseMI GCAATG 2 cut(s) 288, 300
BseNI ACTGG 2 cut(s) 181, 323
BseXI GCAGC 4 cut(s) 20, 218, 219, 228
BshFI GGCC 2 cut(s) 151, 180
BsiSI CCGG 1 cut(s) 163
BsnI GGCC 2 cut(s) 151, 180
BspANI GGCC 2 cut(s) 151, 180
BspHI TCATGA 1 cut(s) 64
BspMAI CTGCAG 1 cut(s) 209
BspQI GCTCTTC 1 cut(s) 103
BsrDI GCAATG 2 cut(s) 288, 300
BsrFI RCCGGY 1 cut(s) 162
BsrI ACTGG 2 cut(s) 181, 323
BssAI RCCGGY 1 cut(s) 162
BssNAI GTATAC 1 cut(s) 202
Bst1107I GTATAC 1 cut(s) 202
Bst4CI ACNGT 1 cut(s) 190
Bst6I CTCTTC 1 cut(s) 103
BstAPI GCANNNNNTGC 1 cut(s) 213
BstMWI GCNNNNNNNGC 4 cut(s) 11, 42, 213, 216
BstSFI CTRYAG 1 cut(s) 205
BstV1I GCAGC 4 cut(s) 20, 218, 219, 228
BstZ17I GTATAC 1 cut(s) 202
BsuRI GGCC 2 cut(s) 151, 180
BtsIMutI CAGTG 1 cut(s) 174
CaiI CAGNNNCTG 1 cut(s) 194
CciI TCATGA 1 cut(s) 64
Cfr10I RCCGGY 1 cut(s) 162
Cfr13I GGNCC 2 cut(s) 149, 160
Csp6I GTAC 1 cut(s) 268
CviAII CATG 2 cut(s) 65, 128
CviJI RGCY 7 cut(s) 5, 14, 113, 151, 180, 231, 248
CviKI_1 RGCY 7 cut(s) 5, 14, 113, 151, 180, 231, 248
CviQI GTAC 1 cut(s) 268
EaeI YGGCCR 1 cut(s) 178
Eam1104I CTCTTC 1 cut(s) 103
EarI CTCTTC 1 cut(s) 103
Eco47I GGWCC 1 cut(s) 160
EcoO109I RGGNCCY 1 cut(s) 149
FaeI CATG 2 cut(s) 68, 131
FatI CATG 2 cut(s) 64, 127
FblI GTMKAC 1 cut(s) 201
Fnu4HI GCNGC 4 cut(s) 34, 208, 217, 232
Fsp4HI GCNGC 4 cut(s) 34, 208, 217, 232
FspBI CTAG 1 cut(s) 96
GluI GCNGC 4 cut(s) 34, 208, 217, 232
HaeIII GGCC 2 cut(s) 151, 180
HapII CCGG 1 cut(s) 163
Hin1II CATG 2 cut(s) 68, 131
HindIII AAGCTT 1 cut(s) 246
HpaII CCGG 1 cut(s) 163
Hpy166II GTNNAC 1 cut(s) 202
Hpy188I TCNGA 1 cut(s) 93
Hpy188III TCNNGA 1 cut(s) 65
Hpy8I GTNNAC 1 cut(s) 202
HpyAV CCTTC 2 cut(s) 15, 269
HpyCH4III ACNGT 1 cut(s) 190
HpyCH4V TGCA 6 cut(s) 207, 216, 234, 262, 288, 293
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 42, 213, 216
Hsp92II CATG 2 cut(s) 68, 131
LguI GCTCTTC 1 cut(s) 103
LpnPI CCDG 4 cut(s) 59, 162, 176, 304
Lsp1109I GCAGC 4 cut(s) 20, 218, 219, 228
MaeI CTAG 1 cut(s) 96
MaeIII GTNAC 1 cut(s) 182
MboII GAAGA 1 cut(s) 120
MnlI CCTC 1 cut(s) 151
MslI CAYNNNNRTG 1 cut(s) 293
MspI CCGG 1 cut(s) 163
MwoI GCNNNNNNNGC 4 cut(s) 11, 42, 213, 216
NlaIII CATG 2 cut(s) 68, 131
PagI TCATGA 1 cut(s) 64
PciSI GCTCTTC 1 cut(s) 103
PkrI GCNGC 4 cut(s) 35, 209, 218, 233
PspPI GGNCC 2 cut(s) 149, 160
PstI CTGCAG 1 cut(s) 209
PstNI CAGNNNCTG 1 cut(s) 194
RsaI GTAC 1 cut(s) 269
RsaNI GTAC 1 cut(s) 268
RseI CAYNNNNRTG 1 cut(s) 293
SapI GCTCTTC 1 cut(s) 103
SatI GCNGC 4 cut(s) 34, 208, 217, 232
Sau96I GGNCC 2 cut(s) 149, 160
SetI ASST 2 cut(s) 26, 250
SfcI CTRYAG 1 cut(s) 205
SinI GGWCC 1 cut(s) 160
SmiMI CAYNNNNRTG 1 cut(s) 293
SspI AATATT 2 cut(s) 86, 284
SspMI CTAG 1 cut(s) 96
TaaI ACNGT 1 cut(s) 190
TatI WGTACW 1 cut(s) 267
TscAI CASTG 1 cut(s) 181
TseI GCWGC 4 cut(s) 33, 207, 216, 231
TspRI CASTG 1 cut(s) 181
VpaK11BI GGWCC 1 cut(s) 160
XmiI GTMKAC 1 cut(s) 201
XspI CTAG 1 cut(s) 96
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.