Rorug01G0278300

Belongs to the yippee family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000903
Physical Location & Seq
Forward (+)
39177013 .. 39177345
333 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0278300.1

Sequence Viewer

Length: 333 bp
ATGCCAGAAGCTCTAATGGCCGAGATCAACACTGCAATTTACAATCTTGAATACGCACGGGCCTCTGTTCTTCTCGAATCGACGTCCCCTTCTTCTTCCTCTTCTTCAATCTCGAAGAATGAGAGCTCTGCTCAACCTCAGTTTGATGCCCGGAAAGCGGATCAGGCTTACAAGGCAGGCTGTGCTGCCTTGGCTGCTGGGAAGCTCGATGAGGCTCTTCTGTCATTGAATGTTTCGCTTTCGAAATGCCCACTTGATCAGACCTCTGCCGTTGCGAAGCTTCATTCGCTTATCTCTCTCACATCTCAGCAGCTGCACAAACCCACCAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Yippee-Mis18

Protein Analysis

110

Amino Acids

11.6

Weight (kDa)

6.05

Isoelectric Point (pI)

45.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 86
AciI CCGC 1 cut(s) 158
AclWI GGATC 1 cut(s) 168
AcoI YGGCCR 1 cut(s) 18
AcyI GRCGYC 1 cut(s) 83
AfiI CCNNNNNNNGG 1 cut(s) 157
AgsI TTSAA 3 cut(s) 50, 108, 229
AluBI AGCT 5 cut(s) 11, 126, 205, 280, 313
AluI AGCT 5 cut(s) 11, 126, 205, 280, 313
Alw21I GWGCWC 1 cut(s) 128
AlwI GGATC 1 cut(s) 168
AlwNI CAGNNNCTG 1 cut(s) 313
AoxI GGCC 2 cut(s) 18, 60
ApeKI GCWGC 4 cut(s) 185, 194, 310, 313
AspS9I GGNCC 1 cut(s) 60
AsuC2I CCSGG 1 cut(s) 151
AsuII TTCGAA 1 cut(s) 242
BanII GRGCYC 1 cut(s) 128
Bbv12I GWGCWC 1 cut(s) 128
BbvI GCAGC 4 cut(s) 172, 181, 300, 322
BceAI ACGGC 1 cut(s) 254
BclI TGATCA 1 cut(s) 256
BcnI CCSGG 1 cut(s) 151
BisI GCNGC 4 cut(s) 186, 195, 311, 314
BlsI GCNGC 4 cut(s) 187, 196, 312, 315
Bme1390I CCNGG 1 cut(s) 151
BmgT120I GGNCC 1 cut(s) 60
BmrFI CCNGG 1 cut(s) 151
BmsI GCATC 1 cut(s) 136
BplI GAGNNNNNCTC 2 cut(s) 115, 147
Bpu14I TTCGAA 1 cut(s) 242
BpuMI CCSGG 1 cut(s) 151
BsaHI GRCGYC 1 cut(s) 83
BsaJI CCNNGG 1 cut(s) 189
Bsc4I CCNNNNNNNGG 1 cut(s) 157
BseDI CCNNGG 1 cut(s) 189
BseLI CCNNNNNNNGG 1 cut(s) 157
BseMII CTCAG 2 cut(s) 152, 320
BseXI GCAGC 4 cut(s) 172, 181, 300, 322
BseYI CCCAGC 1 cut(s) 197
BsgI GTGCAG 1 cut(s) 299
BshFI GGCC 2 cut(s) 20, 62
BsiHKAI GWGCWC 1 cut(s) 128
BsiSI CCGG 1 cut(s) 151
BslFI GGGAC 1 cut(s) 70
BslI CCNNNNNNNGG 1 cut(s) 157
BsmFI GGGAC 1 cut(s) 70
BsnI GGCC 2 cut(s) 20, 62
Bsp119I TTCGAA 1 cut(s) 242
Bsp1286I GDGCHC 1 cut(s) 128
Bsp143I GATC 3 cut(s) 24, 160, 256
BspACI CCGC 1 cut(s) 158
BspANI GGCC 2 cut(s) 20, 62
BspCNI CTCAG 2 cut(s) 151, 319
BspPI GGATC 1 cut(s) 168
BspQI GCTCTTC 1 cut(s) 222
BspT104I TTCGAA 1 cut(s) 242
BssECI CCNNGG 1 cut(s) 189
BssMI GATC 3 cut(s) 24, 160, 256
BssNI GRCGYC 1 cut(s) 83
BssT1I CCWWGG 1 cut(s) 189
Bst6I CTCTTC 2 cut(s) 106, 222
BstACI GRCGYC 1 cut(s) 83
BstAPI GCANNNNNTGC 1 cut(s) 182
BstBI TTCGAA 1 cut(s) 242
BstC8I GCNNGC 1 cut(s) 178
BstDEI CTNAG 2 cut(s) 138, 306
BstKTI GATC 3 cut(s) 27, 163, 259
BstMBI GATC 3 cut(s) 24, 160, 256
BstMWI GCNNNNNNNGC 8 cut(s) 17, 155, 164, 173, 182, 191, 194, 286
BstSCI CCNGG 1 cut(s) 149
BstV1I GCAGC 4 cut(s) 172, 181, 300, 322
BsuRI GGCC 2 cut(s) 20, 62
BtsI GCAGTG 1 cut(s) 30
BtsIMutI CAGTG 1 cut(s) 30
Cac8I GCNNGC 1 cut(s) 178
CaiI CAGNNNCTG 1 cut(s) 313
Cfr13I GGNCC 1 cut(s) 60
DdeI CTNAG 2 cut(s) 138, 306
DpnI GATC 3 cut(s) 26, 162, 258
DpnII GATC 3 cut(s) 24, 160, 256
EaeI YGGCCR 1 cut(s) 18
Eam1104I CTCTTC 2 cut(s) 106, 222
EarI CTCTTC 2 cut(s) 106, 222
Ecl136II GAGCTC 1 cut(s) 126
Eco130I CCWWGG 1 cut(s) 189
Eco24I GRGCYC 1 cut(s) 128
Eco53kI GAGCTC 1 cut(s) 126
EcoICRI GAGCTC 1 cut(s) 126
EcoT14I CCWWGG 1 cut(s) 189
EcoT38I GRGCYC 1 cut(s) 128
ErhI CCWWGG 1 cut(s) 189
FaqI GGGAC 1 cut(s) 70
FbaI TGATCA 1 cut(s) 256
Fnu4HI GCNGC 4 cut(s) 186, 195, 311, 314
FriOI GRGCYC 1 cut(s) 128
Fsp4HI GCNGC 4 cut(s) 186, 195, 311, 314
GluI GCNGC 4 cut(s) 186, 195, 311, 314
GsaI CCCAGC 1 cut(s) 201
HaeIII GGCC 2 cut(s) 20, 62
HapII CCGG 1 cut(s) 151
Hin1I GRCGYC 1 cut(s) 83
HindIII AAGCTT 1 cut(s) 278
HinfI GANTC 1 cut(s) 77
HpaII CCGG 1 cut(s) 151
Hpy188I TCNGA 1 cut(s) 261
Hpy188III TCNNGA 3 cut(s) 47, 74, 112
Hpy99I CGWCG 1 cut(s) 85
HpyAV CCTTC 1 cut(s) 99
HpyCH4IV ACGT 1 cut(s) 83
HpyCH4V TGCA 2 cut(s) 35, 316
HpyF10VI GCNNNNNNNGC 8 cut(s) 17, 155, 164, 173, 182, 191, 194, 286
HpyF3I CTNAG 2 cut(s) 138, 306
HpySE526I ACGT 1 cut(s) 83
Hsp92I GRCGYC 1 cut(s) 83
Ksp22I TGATCA 1 cut(s) 256
Kzo9I GATC 3 cut(s) 24, 160, 256
LguI GCTCTTC 1 cut(s) 222
LpnPI CCDG 5 cut(s) 18, 149, 162, 164, 183
Lsp1109I GCAGC 4 cut(s) 172, 181, 300, 322
LweI GCATC 1 cut(s) 136
MaeII ACGT 1 cut(s) 83
MalI GATC 3 cut(s) 26, 162, 258
MboI GATC 3 cut(s) 24, 160, 256
MboII GAAGA 7 cut(s) 62, 84, 87, 93, 96, 127, 209
MhlI GDGCHC 1 cut(s) 128
MluCI AATT 1 cut(s) 36
MnlI CCTC 5 cut(s) 73, 109, 147, 205, 274
MspA1I CMGCKG 1 cut(s) 313
MspI CCGG 1 cut(s) 151
MspR9I CCNGG 1 cut(s) 151
MwoI GCNNNNNNNGC 8 cut(s) 17, 155, 164, 173, 182, 191, 194, 286
NciI CCSGG 1 cut(s) 151
NdeII GATC 3 cut(s) 24, 160, 256
NmeAIII GCCGAG 1 cut(s) 46
NspV TTCGAA 1 cut(s) 242
PciSI GCTCTTC 1 cut(s) 222
PfeI GAWTC 1 cut(s) 77
PkrI GCNGC 4 cut(s) 187, 196, 312, 315
Psp124BI GAGCTC 1 cut(s) 128
PspFI CCCAGC 1 cut(s) 197
PspPI GGNCC 1 cut(s) 60
PstNI CAGNNNCTG 1 cut(s) 313
PvuII CAGCTG 1 cut(s) 313
SacI GAGCTC 1 cut(s) 128
SapI GCTCTTC 1 cut(s) 222
SatI GCNGC 4 cut(s) 186, 195, 311, 314
Sau3AI GATC 3 cut(s) 24, 160, 256
Sau96I GGNCC 1 cut(s) 60
ScrFI CCNGG 1 cut(s) 151
SduI GDGCHC 1 cut(s) 128
SetI ASST 8 cut(s) 13, 86, 128, 139, 207, 266, 282, 315
SfaNI GCATC 1 cut(s) 136
SfuI TTCGAA 1 cut(s) 242
Sse9I AATT 1 cut(s) 36
SsiI CCGC 1 cut(s) 158
SstI GAGCTC 1 cut(s) 128
StyD4I CCNGG 1 cut(s) 149
StyI CCWWGG 1 cut(s) 189
TaiI ACGT 1 cut(s) 86
TaqI TCGA 5 cut(s) 75, 80, 113, 207, 242
TasI AATT 1 cut(s) 36
TfiI GAWTC 1 cut(s) 77
TscAI CASTG 1 cut(s) 37
TseI GCWGC 4 cut(s) 185, 194, 310, 313
TspDTI ATGAA 1 cut(s) 272
TspRI CASTG 1 cut(s) 37
ZraI GACGTC 1 cut(s) 84
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.