MD07G1295300.v1.1

Belongs to the yippee family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0000903
Physical Location & Seq
Reverse (-)
35608770 .. 35610913
2144 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1295300.v1.1.491

Sequence Viewer

Length: 321 bp
ATGGCGGATTTGGTAGGGCCTAGATTGTACAGCTGTTGTAATTGCAGAAATCATGTCTCACTTCATGATGATATAATTTCCAAGGCCTTTCAGGGAAAACATGGCCGAGCATTTCTGTTCTCCCACGCAATGAATGTTGTTGTTGGGGCAAAAGAAGACAGACGTCTCTTAACCGGTCTGCATACTGTTGCTGATATCCACTGTGGTGATTGCCGTGAGGTGTTGGGTTGGAAGTACGTACGAGCTTATGAGGCATTGCAAAAGTACAAAGAAGGGAAGTTCATATTTGAGAAGTCCAAAATTGTGAAGGAAGATTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Yippee-Mis18

Protein Analysis

107

Amino Acids

12.17

Weight (kDa)

8.85

Isoelectric Point (pI)

17.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Yippee-Mis18 PF03226 10 - 102 1.2e-12 Yippee zinc-binding/DNA-binding /Mis18, centromere assembly
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 166
AciI CCGC 1 cut(s) 5
AcoI YGGCCR 1 cut(s) 103
AcyI GRCGYC 1 cut(s) 163
AfaI GTAC 4 cut(s) 29, 236, 240, 266
AgeI ACCGGT 1 cut(s) 173
AleI CACNNNNGTG 1 cut(s) 204
AluBI AGCT 2 cut(s) 33, 245
AluI AGCT 2 cut(s) 33, 245
Alw26I GTCTC 2 cut(s) 61, 170
AoxI GGCC 3 cut(s) 17, 84, 103
AsiGI ACCGGT 1 cut(s) 173
AspS9I GGNCC 1 cut(s) 17
AsuHPI GGTGA 1 cut(s) 218
BbsI GAAGAC 1 cut(s) 162
BceAI ACGGC 1 cut(s) 198
BcoDI GTCTC 2 cut(s) 61, 170
BfaI CTAG 1 cut(s) 21
BmgT120I GGNCC 1 cut(s) 17
BoxI GACNNNNGTC 1 cut(s) 162
BpiI GAAGAC 1 cut(s) 162
BsaAI YACGTR 1 cut(s) 238
BsaHI GRCGYC 1 cut(s) 163
BsaJI CCNNGG 1 cut(s) 81
BsaWI WCCGGW 1 cut(s) 173
Bse118I RCCGGY 1 cut(s) 173
Bse3DI GCAATG 2 cut(s) 135, 254
BseDI CCNNGG 1 cut(s) 81
BseMI GCAATG 2 cut(s) 135, 254
BshFI GGCC 3 cut(s) 19, 86, 105
BshTI ACCGGT 1 cut(s) 173
BsiSI CCGG 1 cut(s) 174
BsiWI CGTACG 1 cut(s) 238
BsmAI GTCTC 2 cut(s) 61, 170
BsmBI CGTCTC 1 cut(s) 170
BsnI GGCC 3 cut(s) 19, 86, 105
Bsp1407I TGTACA 1 cut(s) 27
BspACI CCGC 1 cut(s) 5
BspANI GGCC 3 cut(s) 19, 86, 105
BspHI TCATGA 1 cut(s) 64
BsrDI GCAATG 2 cut(s) 135, 254
BsrFI RCCGGY 1 cut(s) 173
BsrGI TGTACA 1 cut(s) 27
BssAI RCCGGY 1 cut(s) 173
BssECI CCNNGG 1 cut(s) 81
BssNI GRCGYC 1 cut(s) 163
BssT1I CCWWGG 1 cut(s) 81
Bst4CI ACNGT 2 cut(s) 187, 203
BstACI GRCGYC 1 cut(s) 163
BstAUI TGTACA 1 cut(s) 27
BstBAI YACGTR 1 cut(s) 238
BstMAI GTCTC 2 cut(s) 61, 170
BstMWI GCNNNNNNNGC 1 cut(s) 251
BstPAI GACNNNNGTC 1 cut(s) 162
BstSNI TACGTA 1 cut(s) 238
BstV2I GAAGAC 1 cut(s) 162
BsuRI GGCC 3 cut(s) 19, 86, 105
BtsIMutI CAGTG 1 cut(s) 199
CciI TCATGA 1 cut(s) 64
Cfr10I RCCGGY 1 cut(s) 173
Cfr13I GGNCC 1 cut(s) 17
Csp6I GTAC 4 cut(s) 28, 235, 239, 265
CspAI ACCGGT 1 cut(s) 173
CviAII CATG 3 cut(s) 53, 65, 101
CviJI RGCY 5 cut(s) 19, 33, 86, 105, 245
CviKI_1 RGCY 5 cut(s) 19, 33, 86, 105, 245
CviQI GTAC 4 cut(s) 28, 235, 239, 265
EaeI YGGCCR 1 cut(s) 103
EciI GGCGGA 1 cut(s) 20
Eco105I TACGTA 1 cut(s) 238
Eco130I CCWWGG 1 cut(s) 81
Eco147I AGGCCT 1 cut(s) 86
Eco32I GATATC 1 cut(s) 196
EcoO109I RGGNCCY 1 cut(s) 17
EcoRV GATATC 1 cut(s) 196
EcoT14I CCWWGG 1 cut(s) 81
ErhI CCWWGG 1 cut(s) 81
Esp3I CGTCTC 1 cut(s) 170
FaeI CATG 3 cut(s) 56, 68, 104
FaiI YATR 7 cut(s) 54, 66, 74, 102, 183, 249, 284
FatI CATG 3 cut(s) 52, 64, 100
FspBI CTAG 1 cut(s) 21
HaeIII GGCC 3 cut(s) 19, 86, 105
HapII CCGG 1 cut(s) 174
Hin1I GRCGYC 1 cut(s) 163
Hin1II CATG 3 cut(s) 56, 68, 104
HpaII CCGG 1 cut(s) 174
HphI GGTGA 1 cut(s) 218
Hpy188III TCNNGA 1 cut(s) 65
HpyAV CCTTC 2 cut(s) 266, 301
HpyCH4III ACNGT 2 cut(s) 187, 203
HpyCH4IV ACGT 2 cut(s) 163, 237
HpyCH4V TGCA 3 cut(s) 45, 181, 259
HpyF10VI GCNNNNNNNGC 1 cut(s) 251
HpySE526I ACGT 2 cut(s) 163, 237
Hsp92I GRCGYC 1 cut(s) 163
Hsp92II CATG 3 cut(s) 56, 68, 104
LpnPI CCDG 2 cut(s) 77, 187
MaeI CTAG 1 cut(s) 21
MaeII ACGT 2 cut(s) 163, 237
MboII GAAGA 1 cut(s) 167
MluCI AATT 3 cut(s) 40, 75, 300
MmeI TCCRAC 1 cut(s) 209
MnlI CCTC 2 cut(s) 211, 244
MseI TTAA 1 cut(s) 170
MslI CAYNNNNRTG 1 cut(s) 204
MspA1I CMGCKG 1 cut(s) 33
MspI CCGG 1 cut(s) 174
MwoI GCNNNNNNNGC 1 cut(s) 251
NlaIII CATG 3 cut(s) 56, 68, 104
NmeAIII GCCGAG 1 cut(s) 131
OliI CACNNNNGTG 1 cut(s) 204
PagI TCATGA 1 cut(s) 64
PceI AGGCCT 1 cut(s) 86
Pfl23II CGTACG 1 cut(s) 238
PinAI ACCGGT 1 cut(s) 173
Ppu21I YACGTR 1 cut(s) 238
PshAI GACNNNNGTC 1 cut(s) 162
PspLI CGTACG 1 cut(s) 238
PspPI GGNCC 1 cut(s) 17
PvuII CAGCTG 1 cut(s) 33
RsaI GTAC 4 cut(s) 29, 236, 240, 266
RsaNI GTAC 4 cut(s) 28, 235, 239, 265
RseI CAYNNNNRTG 1 cut(s) 204
SaqAI TTAA 1 cut(s) 170
Sau96I GGNCC 1 cut(s) 17
SetI ASST 5 cut(s) 35, 166, 222, 240, 247
SmiMI CAYNNNNRTG 1 cut(s) 204
SnaBI TACGTA 1 cut(s) 238
Sse9I AATT 3 cut(s) 40, 75, 300
SseBI AGGCCT 1 cut(s) 86
SsiI CCGC 1 cut(s) 5
SspMI CTAG 1 cut(s) 21
StuI AGGCCT 1 cut(s) 86
StyI CCWWGG 1 cut(s) 81
TaaI ACNGT 2 cut(s) 187, 203
TaiI ACGT 2 cut(s) 166, 240
TasI AATT 3 cut(s) 40, 75, 300
TatI WGTACW 2 cut(s) 27, 264
Tru1I TTAA 1 cut(s) 170
Tru9I TTAA 1 cut(s) 170
TscAI CASTG 1 cut(s) 206
TspDTI ATGAA 3 cut(s) 53, 146, 271
TspRI CASTG 1 cut(s) 206
XspI CTAG 1 cut(s) 21
ZraI GACGTC 1 cut(s) 164
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.