pycom06g10810

Belongs to the yippee family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0000903
Physical Location & Seq
Reverse (-)
16060448 .. 16061277
830 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g10810.1

Sequence Viewer

Length: 321 bp
ATGGCGGAATTGGTTGGGCCGAGGTTGTACAGCTGCTGCAATTGCCGAAACCATGTTGCCCTTCACGACGATGTCATTTCGAAAGCCTTTCAGGGTAGAAATGGTCGAGCGTTTCTGTTTTCACATGCAATGAACATTACAGTCGGGCCAAAAGAAGACAGACAACTCATGACCGGTCTGCACACGGTCGCTGATGTTTCCTGCTGCGACTGCCATGAGGTGCTGGGTTGGAAGTATGAACGTGCCTATGAGCAGACACAGAAGTACAAGGAAGGGAAATTCGTTCTTGAGAAATCGAAGATAGTCAAGGAAGACTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Yippee-Mis18

Protein Analysis

107

Amino Acids

12.18

Weight (kDa)

7.63

Isoelectric Point (pI)

24.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Yippee-Mis18 PF03226 10 - 102 3.1e-12 Yippee zinc-binding/DNA-binding /Mis18, centromere assembly
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 5
AcsI RAATTY 1 cut(s) 278
AfaI GTAC 2 cut(s) 29, 266
AgeI ACCGGT 1 cut(s) 173
AluBI AGCT 1 cut(s) 33
AluI AGCT 1 cut(s) 33
AlwNI CAGNNNCTG 1 cut(s) 36
AoxI GGCC 2 cut(s) 17, 146
ApeKI GCWGC 3 cut(s) 33, 36, 204
ApoI RAATTY 1 cut(s) 278
AsiGI ACCGGT 1 cut(s) 173
AspS9I GGNCC 2 cut(s) 17, 146
AsuII TTCGAA 1 cut(s) 80
BbsI GAAGAC 1 cut(s) 162
BbvI GCAGC 3 cut(s) 20, 23, 191
BisI GCNGC 3 cut(s) 34, 37, 205
BlsI GCNGC 3 cut(s) 35, 38, 206
BmgT120I GGNCC 2 cut(s) 17, 146
BpiI GAAGAC 1 cut(s) 162
Bpu14I TTCGAA 1 cut(s) 80
BpuEI CTTGAG 1 cut(s) 308
BsaJI CCNNGG 1 cut(s) 20
BsaWI WCCGGW 1 cut(s) 173
Bse118I RCCGGY 1 cut(s) 173
Bse1I ACTGG 1 cut(s) 320
Bse3DI GCAATG 1 cut(s) 135
BseDI CCNNGG 1 cut(s) 20
BseMI GCAATG 1 cut(s) 135
BseNI ACTGG 1 cut(s) 320
BseXI GCAGC 3 cut(s) 20, 23, 191
BseYI CCCAGC 1 cut(s) 223
BsgI GTGCAG 1 cut(s) 164
Bsh1285I CGRYCG 1 cut(s) 189
BshFI GGCC 2 cut(s) 19, 148
BshTI ACCGGT 1 cut(s) 173
BsiEI CGRYCG 1 cut(s) 189
BsiSI CCGG 1 cut(s) 174
BsnI GGCC 2 cut(s) 19, 148
Bsp119I TTCGAA 1 cut(s) 80
Bsp1407I TGTACA 1 cut(s) 27
BspACI CCGC 1 cut(s) 5
BspANI GGCC 2 cut(s) 19, 148
BspHI TCATGA 1 cut(s) 168
BspT104I TTCGAA 1 cut(s) 80
BsrDI GCAATG 1 cut(s) 135
BsrFI RCCGGY 1 cut(s) 173
BsrGI TGTACA 1 cut(s) 27
BsrI ACTGG 1 cut(s) 320
BssAI RCCGGY 1 cut(s) 173
BssECI CCNNGG 1 cut(s) 20
Bst4CI ACNGT 2 cut(s) 142, 187
BstAUI TGTACA 1 cut(s) 27
BstBI TTCGAA 1 cut(s) 80
BstMCI CGRYCG 1 cut(s) 189
BstMWI GCNNNNNNNGC 2 cut(s) 42, 210
BstNSI RCATGY 1 cut(s) 128
BstV1I GCAGC 3 cut(s) 20, 23, 191
BstV2I GAAGAC 1 cut(s) 162
BsuRI GGCC 2 cut(s) 19, 148
CaiI CAGNNNCTG 1 cut(s) 36
CciI TCATGA 1 cut(s) 168
Cfr10I RCCGGY 1 cut(s) 173
Cfr13I GGNCC 2 cut(s) 17, 146
Csp6I GTAC 2 cut(s) 28, 265
CspAI ACCGGT 1 cut(s) 173
CviAII CATG 4 cut(s) 53, 125, 169, 215
CviJI RGCY 4 cut(s) 19, 33, 86, 148
CviKI_1 RGCY 4 cut(s) 19, 33, 86, 148
CviQI GTAC 2 cut(s) 28, 265
EciI GGCGGA 1 cut(s) 20
FaeI CATG 4 cut(s) 56, 128, 172, 218
FaiI YATR 6 cut(s) 54, 126, 170, 216, 237, 249
FatI CATG 4 cut(s) 52, 124, 168, 214
Fnu4HI GCNGC 3 cut(s) 34, 37, 205
Fsp4HI GCNGC 3 cut(s) 34, 37, 205
GluI GCNGC 3 cut(s) 34, 37, 205
GsaI CCCAGC 1 cut(s) 227
HaeIII GGCC 2 cut(s) 19, 148
HapII CCGG 1 cut(s) 174
Hin1II CATG 4 cut(s) 56, 128, 172, 218
HpaII CCGG 1 cut(s) 174
Hpy188III TCNNGA 3 cut(s) 65, 169, 287
Hpy99I CGWCG 1 cut(s) 71
HpyAV CCTTC 2 cut(s) 71, 266
HpyCH4III ACNGT 2 cut(s) 142, 187
HpyCH4IV ACGT 1 cut(s) 241
HpyCH4V TGCA 3 cut(s) 39, 128, 181
HpyF10VI GCNNNNNNNGC 2 cut(s) 42, 210
HpySE526I ACGT 1 cut(s) 241
Hsp92II CATG 4 cut(s) 56, 128, 172, 218
LpnPI CCDG 5 cut(s) 77, 187, 209, 214, 301
Lsp1109I GCAGC 3 cut(s) 20, 23, 191
MaeII ACGT 1 cut(s) 241
MboII GAAGA 2 cut(s) 167, 310
MfeI CAATTG 1 cut(s) 40
MluCI AATT 3 cut(s) 8, 40, 278
MmeI TCCRAC 1 cut(s) 209
MnlI CCTC 2 cut(s) 15, 211
MslI CAYNNNNRTG 1 cut(s) 69
MspA1I CMGCKG 1 cut(s) 33
MspI CCGG 1 cut(s) 174
MunI CAATTG 1 cut(s) 40
MwoI GCNNNNNNNGC 2 cut(s) 42, 210
NlaIII CATG 4 cut(s) 56, 128, 172, 218
NmeAIII GCCGAG 1 cut(s) 45
NspI RCATGY 1 cut(s) 128
NspV TTCGAA 1 cut(s) 80
PagI TCATGA 1 cut(s) 168
PflFI GACNNNGTC 1 cut(s) 71
PinAI ACCGGT 1 cut(s) 173
PkrI GCNGC 3 cut(s) 35, 38, 206
PspFI CCCAGC 1 cut(s) 223
PspPI GGNCC 2 cut(s) 17, 146
PstNI CAGNNNCTG 1 cut(s) 36
PsyI GACNNNGTC 1 cut(s) 71
PvuII CAGCTG 1 cut(s) 33
RsaI GTAC 2 cut(s) 29, 266
RsaNI GTAC 2 cut(s) 28, 265
RseI CAYNNNNRTG 1 cut(s) 69
SatI GCNGC 3 cut(s) 34, 37, 205
Sau96I GGNCC 2 cut(s) 17, 146
SetI ASST 4 cut(s) 26, 35, 222, 244
SfuI TTCGAA 1 cut(s) 80
SmiMI CAYNNNNRTG 1 cut(s) 69
SmlI CTYRAG 1 cut(s) 287
SmoI CTYRAG 1 cut(s) 287
Sse9I AATT 3 cut(s) 8, 40, 278
SsiI CCGC 1 cut(s) 5
TaaI ACNGT 2 cut(s) 142, 187
TaiI ACGT 1 cut(s) 244
TaqI TCGA 3 cut(s) 80, 106, 296
TasI AATT 3 cut(s) 8, 40, 278
TatI WGTACW 2 cut(s) 27, 264
TseI GCWGC 3 cut(s) 33, 36, 204
TspDTI ATGAA 2 cut(s) 146, 252
Tth111I GACNNNGTC 1 cut(s) 71
XapI RAATTY 1 cut(s) 278
XceI RCATGY 1 cut(s) 128
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.