pycom07g15180

Belongs to the yippee family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
Physical Location & Seq
Forward (+)
17316635 .. 17317696
1062 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g15180.2

Sequence Viewer

Length: 321 bp
ATGGCTGATTTAGCTGGGCCAAGGCTGTATGGTTGCTACAAGTGCCAGAATCATGTTTGCTGTCATGATGATATTGTCTCTAAAGCTTTTCAGGCAAGCCGTGGCAGGGCCTTTCTGTTCTCCCATGCAACAAACGTGGTCGTAGGGCCTAAAGAGGATCGGCATCTGATCACAGGTCTCCACACAGTTGCTGATGTACACTGCTGTGATTGTGGGGAGGTGTTAGGCTGGAAATATGTCAAGGCTTATGAGGAATTGCAGAAGTACAAAGAAGGAAAATTCGTTCTTGAAAAATTTAAGATTGTTAAGATCAATTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

107

Amino Acids

12.08

Weight (kDa)

8.47

Isoelectric Point (pI)

11.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 165
AcsI RAATTY 2 cut(s) 278, 293
AfaI GTAC 2 cut(s) 198, 266
AfiI CCNNNNNNNGG 1 cut(s) 106
AgsI TTSAA 1 cut(s) 290
AleI CACNNNNGTG 1 cut(s) 204
AloI GAACNNNNNNTCC 2 cut(s) 267, 299
AluBI AGCT 2 cut(s) 14, 86
AluI AGCT 2 cut(s) 14, 86
Alw26I GTCTC 2 cut(s) 82, 182
AlwI GGATC 1 cut(s) 165
AlwNI CAGNNNCTG 1 cut(s) 191
AoxI GGCC 3 cut(s) 17, 108, 146
ApoI RAATTY 2 cut(s) 278, 293
AspS9I GGNCC 3 cut(s) 17, 108, 146
BceAI ACGGC 1 cut(s) 84
BclI TGATCA 1 cut(s) 168
BcoDI GTCTC 2 cut(s) 82, 182
BmgT120I GGNCC 3 cut(s) 17, 108, 146
BmsI GCATC 1 cut(s) 172
BsaBI GATNNNNATC 1 cut(s) 162
BsaI GGTCTC 1 cut(s) 182
BsaJI CCNNGG 2 cut(s) 20, 100
Bsc4I CCNNNNNNNGG 1 cut(s) 106
Bse8I GATNNNNATC 1 cut(s) 162
BseDI CCNNGG 2 cut(s) 20, 100
BseJI GATNNNNATC 1 cut(s) 162
BseLI CCNNNNNNNGG 1 cut(s) 106
BseYI CCCAGC 1 cut(s) 14
BshFI GGCC 3 cut(s) 19, 110, 148
BslI CCNNNNNNNGG 1 cut(s) 106
BsmAI GTCTC 2 cut(s) 82, 182
BsnI GGCC 3 cut(s) 19, 110, 148
Bso31I GGTCTC 1 cut(s) 182
Bsp1407I TGTACA 1 cut(s) 196
Bsp143I GATC 3 cut(s) 157, 168, 309
BspANI GGCC 3 cut(s) 19, 110, 148
BspHI TCATGA 1 cut(s) 64
BspPI GGATC 1 cut(s) 165
BspTNI GGTCTC 1 cut(s) 182
BsrGI TGTACA 1 cut(s) 196
BssECI CCNNGG 2 cut(s) 20, 100
BssMI GATC 3 cut(s) 157, 168, 309
BssT1I CCWWGG 1 cut(s) 20
Bst4CI ACNGT 1 cut(s) 187
BstAUI TGTACA 1 cut(s) 196
BstC8I GCNNGC 1 cut(s) 97
BstDSI CCRYGG 1 cut(s) 100
BstKTI GATC 3 cut(s) 160, 171, 312
BstMAI GTCTC 2 cut(s) 82, 182
BstMBI GATC 3 cut(s) 157, 168, 309
BstMWI GCNNNNNNNGC 3 cut(s) 11, 42, 92
BsuRI GGCC 3 cut(s) 19, 110, 148
BtgI CCRYGG 1 cut(s) 100
BtsI GCAGTG 1 cut(s) 199
BtsIMutI CAGTG 1 cut(s) 199
Cac8I GCNNGC 1 cut(s) 97
CaiI CAGNNNCTG 1 cut(s) 191
CciI TCATGA 1 cut(s) 64
Cfr13I GGNCC 3 cut(s) 17, 108, 146
Csp6I GTAC 2 cut(s) 197, 265
CspCI CAANNNNNGTGG 2 cut(s) 117, 152
CviAII CATG 3 cut(s) 53, 65, 125
CviQI GTAC 2 cut(s) 197, 265
DpnI GATC 3 cut(s) 159, 170, 311
DpnII GATC 3 cut(s) 157, 168, 309
Eco130I CCWWGG 1 cut(s) 20
Eco31I GGTCTC 1 cut(s) 182
EcoO109I RGGNCCY 2 cut(s) 108, 146
EcoT14I CCWWGG 1 cut(s) 20
ErhI CCWWGG 1 cut(s) 20
FaeI CATG 3 cut(s) 56, 68, 128
FaiI YATR 6 cut(s) 30, 54, 66, 126, 237, 249
FatI CATG 3 cut(s) 52, 64, 124
FbaI TGATCA 1 cut(s) 168
GsaI CCCAGC 1 cut(s) 18
HaeIII GGCC 3 cut(s) 19, 110, 148
Hin1II CATG 3 cut(s) 56, 68, 128
HindIII AAGCTT 1 cut(s) 84
HinfI GANTC 1 cut(s) 49
Hpy166II GTNNAC 1 cut(s) 199
Hpy188I TCNGA 1 cut(s) 168
Hpy188III TCNNGA 2 cut(s) 65, 287
Hpy8I GTNNAC 1 cut(s) 199
HpyAV CCTTC 1 cut(s) 266
HpyCH4III ACNGT 1 cut(s) 187
HpyCH4IV ACGT 1 cut(s) 135
HpyCH4V TGCA 2 cut(s) 128, 259
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 42, 92
HpySE526I ACGT 1 cut(s) 135
Hsp92II CATG 3 cut(s) 56, 68, 128
Ksp22I TGATCA 1 cut(s) 168
Kzo9I GATC 3 cut(s) 157, 168, 309
LpnPI CCDG 5 cut(s) 59, 77, 91, 159, 214
LweI GCATC 1 cut(s) 172
MaeII ACGT 1 cut(s) 135
MalI GATC 3 cut(s) 159, 170, 311
MboI GATC 3 cut(s) 157, 168, 309
MfeI CAATTG 1 cut(s) 313
MluCI AATT 4 cut(s) 254, 278, 293, 313
MnlI CCTC 3 cut(s) 148, 211, 244
MseI TTAA 2 cut(s) 297, 306
MslI CAYNNNNRTG 1 cut(s) 204
MunI CAATTG 1 cut(s) 313
MwoI GCNNNNNNNGC 3 cut(s) 11, 42, 92
NdeII GATC 3 cut(s) 157, 168, 309
NlaIII CATG 3 cut(s) 56, 68, 128
OliI CACNNNNGTG 1 cut(s) 204
PagI TCATGA 1 cut(s) 64
PfeI GAWTC 1 cut(s) 49
PspFI CCCAGC 1 cut(s) 14
PspPI GGNCC 3 cut(s) 17, 108, 146
PstNI CAGNNNCTG 1 cut(s) 191
RsaI GTAC 2 cut(s) 198, 266
RsaNI GTAC 2 cut(s) 197, 265
RseI CAYNNNNRTG 1 cut(s) 204
SaqAI TTAA 2 cut(s) 297, 306
Sau3AI GATC 3 cut(s) 157, 168, 309
Sau96I GGNCC 3 cut(s) 17, 108, 146
SetI ASST 5 cut(s) 16, 88, 138, 178, 222
SfaNI GCATC 1 cut(s) 172
SmiMI CAYNNNNRTG 1 cut(s) 204
Sse9I AATT 4 cut(s) 254, 278, 293, 313
StyI CCWWGG 1 cut(s) 20
TaaI ACNGT 1 cut(s) 187
TaiI ACGT 1 cut(s) 138
TasI AATT 4 cut(s) 254, 278, 293, 313
TatI WGTACW 2 cut(s) 196, 264
TfiI GAWTC 1 cut(s) 49
Tru1I TTAA 2 cut(s) 297, 306
Tru9I TTAA 2 cut(s) 297, 306
TscAI CASTG 1 cut(s) 206
TspRI CASTG 1 cut(s) 206
XapI RAATTY 2 cut(s) 278, 293
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.