Rroxscaffold_4G00278380

Belongs to the yippee family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000903
Physical Location & Seq
Forward (+)
1410781 .. 1411916
1136 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00278380.1

Sequence Viewer

Length: 321 bp
ATGGCGGATTTGGTAGGGCCTAGATTGTACAGCTGCTGTAATTGCCGAAACCATGTTTCACTTCATGATGATATAGTTTCTAAAGCTTTTCAGGGAAAACACGGTCGAGCTTTTCTGTTCTCCCATGCGATGAATATAGTTGTTGGGGCAAAGGAAGACAGGCATCTGATGACGGGTCTGCATACTGTGGCTGACATCTCTTGCGGCGATTGCCATGAGGTGTTGGGGTGGAAGTATGAAAGAGCTTATGAGGCTTCACAGAAGTACAAGGAAGGGAAGTTCATATTTGAGAAGTCGAAAATTGTTAAGGAGGGTTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Yippee-Mis18

Protein Analysis

106

Amino Acids

12.05

Weight (kDa)

8.29

Isoelectric Point (pI)

18.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Yippee-Mis18 PF03226 10 - 102 1.7e-13 Yippee zinc-binding/DNA-binding /Mis18, centromere assembly
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 5, 204
AfaI GTAC 2 cut(s) 29, 266
AloI GAACNNNNNNTCC 2 cut(s) 263, 295
AluBI AGCT 4 cut(s) 33, 86, 110, 245
AluI AGCT 4 cut(s) 33, 86, 110, 245
AlwNI CAGNNNCTG 1 cut(s) 36
AoxI GGCC 1 cut(s) 17
ApeKI GCWGC 1 cut(s) 33
AspS9I GGNCC 1 cut(s) 17
BbsI GAAGAC 1 cut(s) 162
BbvI GCAGC 1 cut(s) 20
BfaI CTAG 1 cut(s) 21
BisI GCNGC 2 cut(s) 34, 205
BlsI GCNGC 2 cut(s) 35, 206
BmgT120I GGNCC 1 cut(s) 17
BmsI GCATC 1 cut(s) 172
BpiI GAAGAC 1 cut(s) 162
BsaXI ACNNNNNCTCC 1 cut(s) 302
BseXI GCAGC 1 cut(s) 20
Bsh1285I CGRYCG 1 cut(s) 106
BshFI GGCC 1 cut(s) 19
BsiEI CGRYCG 1 cut(s) 106
BsnI GGCC 1 cut(s) 19
Bsp1407I TGTACA 1 cut(s) 27
BspACI CCGC 2 cut(s) 5, 204
BspANI GGCC 1 cut(s) 19
BspHI TCATGA 1 cut(s) 64
BsrGI TGTACA 1 cut(s) 27
Bst4CI ACNGT 2 cut(s) 104, 187
BstAUI TGTACA 1 cut(s) 27
BstMCI CGRYCG 1 cut(s) 106
BstMWI GCNNNNNNNGC 3 cut(s) 42, 210, 251
BstV1I GCAGC 1 cut(s) 20
BstV2I GAAGAC 1 cut(s) 162
BsuRI GGCC 1 cut(s) 19
BtgZI GCGATG 1 cut(s) 143
CaiI CAGNNNCTG 1 cut(s) 36
CciI TCATGA 1 cut(s) 64
Cfr13I GGNCC 1 cut(s) 17
Csp6I GTAC 2 cut(s) 28, 265
CviAII CATG 4 cut(s) 53, 65, 125, 215
CviJI RGCY 7 cut(s) 19, 33, 86, 110, 191, 245, 254
CviKI_1 RGCY 7 cut(s) 19, 33, 86, 110, 191, 245, 254
CviQI GTAC 2 cut(s) 28, 265
EciI GGCGGA 1 cut(s) 20
EcoO109I RGGNCCY 1 cut(s) 17
FaeI CATG 4 cut(s) 56, 68, 128, 218
FatI CATG 4 cut(s) 52, 64, 124, 214
Fnu4HI GCNGC 2 cut(s) 34, 205
Fsp4HI GCNGC 2 cut(s) 34, 205
FspBI CTAG 1 cut(s) 21
GluI GCNGC 2 cut(s) 34, 205
HaeIII GGCC 1 cut(s) 19
Hin1II CATG 4 cut(s) 56, 68, 128, 218
HindIII AAGCTT 1 cut(s) 84
Hpy188I TCNGA 1 cut(s) 168
Hpy188III TCNNGA 1 cut(s) 65
HpyAV CCTTC 1 cut(s) 266
HpyCH4III ACNGT 2 cut(s) 104, 187
HpyCH4V TGCA 1 cut(s) 181
HpyF10VI GCNNNNNNNGC 3 cut(s) 42, 210, 251
Hsp92II CATG 4 cut(s) 56, 68, 128, 218
LpnPI CCDG 2 cut(s) 77, 145
Lsp1109I GCAGC 1 cut(s) 20
LweI GCATC 1 cut(s) 172
MaeI CTAG 1 cut(s) 21
MboII GAAGA 1 cut(s) 167
MluCI AATT 2 cut(s) 40, 300
MnlI CCTC 3 cut(s) 211, 244, 304
MseI TTAA 1 cut(s) 306
MspA1I CMGCKG 1 cut(s) 33
MwoI GCNNNNNNNGC 3 cut(s) 42, 210, 251
NlaIII CATG 4 cut(s) 56, 68, 128, 218
PagI TCATGA 1 cut(s) 64
PkrI GCNGC 2 cut(s) 35, 206
PspPI GGNCC 1 cut(s) 17
PstNI CAGNNNCTG 1 cut(s) 36
PvuII CAGCTG 1 cut(s) 33
RsaI GTAC 2 cut(s) 29, 266
RsaNI GTAC 2 cut(s) 28, 265
SaqAI TTAA 1 cut(s) 306
SatI GCNGC 2 cut(s) 34, 205
Sau96I GGNCC 1 cut(s) 17
SetI ASST 5 cut(s) 35, 88, 112, 222, 247
SfaNI GCATC 1 cut(s) 172
Sse9I AATT 2 cut(s) 40, 300
SsiI CCGC 2 cut(s) 5, 204
SspMI CTAG 1 cut(s) 21
TaaI ACNGT 2 cut(s) 104, 187
TaqI TCGA 2 cut(s) 106, 296
TasI AATT 2 cut(s) 40, 300
TatI WGTACW 2 cut(s) 27, 264
TauI GCSGC 1 cut(s) 207
Tru1I TTAA 1 cut(s) 306
Tru9I TTAA 1 cut(s) 306
TseI GCWGC 1 cut(s) 33
TspDTI ATGAA 4 cut(s) 53, 146, 252, 271
XspI CTAG 1 cut(s) 21
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.