Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0000903

Physical Location & Seq

Genomic Coordinates Forward (+)

19188286 .. 19189922

Gene Structure 1637 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1085400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 321 bp

ATGGGTGATTTATCTGGGCCAAGGCTGTATGGCTGCTACAAGTGCCAGACCCATGTTTGCTGTCATGATGATATTGTCTCTAAAGCATTTCAGGCAAGCCGTGGCAGGGGCTTTCTGTTCTCCCATGCAGTGAACGTGGTTGTAGGGCCTAAGGAGGATCGGCATCTGATCACAGGCCTCCACACGGTTGCTGATGTACACTGCTGTGATTGTGGGGAGGTGTTAGGCTGGAAATATGTCAAAGCTTATGAGGAATTGCAGAAGTACAAAGAAGGAAAATTTGTTCTTGAAAAATTTAAGATTGTTAAGATCAATTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Yippee-Mis18

Protein Analysis

107

Amino Acids

12.05

Weight (kDa)

8.47

Isoelectric Point (pI)

11.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Yippee-Mis18	PF03226	10 - 103	3.5e-12	Yippee zinc-binding/DNA-binding /Mis18, centromere assembly

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000903)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27745 AT4G27745 AT4G27745 AT4G27745
fragaria_vesca	FvH4_5g11070 FvH4_7g17070 FvH4_7g17070
malus_domestica	MD01G1085400.v1.1 MD01G1224700.v1.1 MD06G1115600.v1.1 MD06G1115900.v1.1 MD07G1154300.v1.1 MD07G1295300.v1.1
prunus_persica	Prupe.2G193000_v2.0.a1 Prupe.2G193000_v2.0.a1 Prupe.2G193000_v2.0.a1 Prupe.2G314900_v2.0.a1 Prupe.2G314900_v2.0.a1 Prupe.5G128000_v2.0.a1 Prupe.5G128000_v2.0.a1 Prupe.5G128000_v2.0.a1 Prupe.5G128000_v2.0.a1 Prupe.5G128000_v2.0.a1 Prupe.5G128000_v2.0.a1 Prupe.5G128000_v2.0.a1
pyrus_communis	pycom06g10810 pycom06g10880 pycom07g15180 pycom07g26790
rosa_chinensis	RchiOBHm_Chr1g0360481 RchiOBHm_Chr1g0381841 RchiOBHm_Chr7g0186701
rosa_laevigata	RLG00000004824 RLG00000026204 RLG00000027804
rosa_multiflora	Rmu_co8409831.1_g000001 Rmu_sc0008418.1_g000002 Rmu_ssc0000337.1_g000012
rosa_roxburghii	Rroxscaffold_3G00267890 Rroxscaffold_4G00278380 Rroxscaffold_4G00296070
rosa_rugosa	Rorug01G0278200 Rorug01G0278300 Rorug01G0278400 Rorug01G0278500 Rorug01G0278600 Rorug06G0475800 Rorug06G0475800
rosa_samantha	Rh1AG291300 Rh1AG454900 Rh1BG256300 Rh1BG412100 Rh1CG274000 Rh1CG426800 Rh1DG286100 Rh1DG444400 Rh7AG064900 Rh7BG081100 Rh7CG082700 Rh7DG083800
rosa_wichuraiana	Rw1G025800 Rw1G041410 Rw1G041440 Rw7G006970 Rw7G007190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	165
AcsI	RAATTY	2 cut(s)	278, 293
AfaI	GTAC	2 cut(s)	198, 266
AfiI	CCNNNNNNNGG	2 cut(s)	106, 184
AgsI	TTSAA	1 cut(s)	290
AleI	CACNNNNGTG	1 cut(s)	204
AloI	GAACNNNNNNTCC	2 cut(s)	267, 299
AluBI	AGCT	1 cut(s)	245
AluI	AGCT	1 cut(s)	245
Alw26I	GTCTC	1 cut(s)	82
AlwI	GGATC	1 cut(s)	165
AoxI	GGCC	3 cut(s)	17, 146, 175
ApeKI	GCWGC	1 cut(s)	33
ApoI	RAATTY	2 cut(s)	278, 293
AspS9I	GGNCC	2 cut(s)	17, 146
AsuHPI	GGTGA	1 cut(s)	17
AxyI	CCTNAGG	1 cut(s)	150
BbvI	GCAGC	1 cut(s)	20
BceAI	ACGGC	1 cut(s)	84
BclI	TGATCA	1 cut(s)	168
BcoDI	GTCTC	1 cut(s)	82
BisI	GCNGC	1 cut(s)	34
BlsI	GCNGC	1 cut(s)	35
BmgT120I	GGNCC	2 cut(s)	17, 146
BmsI	GCATC	1 cut(s)	172
BsaBI	GATNNNNATC	1 cut(s)	162
BsaJI	CCNNGG	2 cut(s)	20, 100
Bsc4I	CCNNNNNNNGG	2 cut(s)	106, 184
Bse21I	CCTNAGG	1 cut(s)	150
Bse8I	GATNNNNATC	1 cut(s)	162
BseDI	CCNNGG	2 cut(s)	20, 100
BseJI	GATNNNNATC	1 cut(s)	162
BseLI	CCNNNNNNNGG	2 cut(s)	106, 184
BseXI	GCAGC	1 cut(s)	20
BshFI	GGCC	3 cut(s)	19, 148, 177
BslI	CCNNNNNNNGG	2 cut(s)	106, 184
BsmAI	GTCTC	1 cut(s)	82
BsnI	GGCC	3 cut(s)	19, 148, 177
Bsp1407I	TGTACA	1 cut(s)	196
Bsp143I	GATC	3 cut(s)	157, 168, 309
BspANI	GGCC	3 cut(s)	19, 148, 177
BspHI	TCATGA	1 cut(s)	64
BspPI	GGATC	1 cut(s)	165
BsrGI	TGTACA	1 cut(s)	196
BssECI	CCNNGG	2 cut(s)	20, 100
BssMI	GATC	3 cut(s)	157, 168, 309
BssT1I	CCWWGG	1 cut(s)	20
Bst4CI	ACNGT	1 cut(s)	187
BstAUI	TGTACA	1 cut(s)	196
BstC8I	GCNNGC	1 cut(s)	97
BstDEI	CTNAG	1 cut(s)	150
BstDSI	CCRYGG	1 cut(s)	100
BstKTI	GATC	3 cut(s)	160, 171, 312
BstMAI	GTCTC	1 cut(s)	82
BstMBI	GATC	3 cut(s)	157, 168, 309
BstMWI	GCNNNNNNNGC	2 cut(s)	42, 92
BstV1I	GCAGC	1 cut(s)	20
Bsu36I	CCTNAGG	1 cut(s)	150
BsuRI	GGCC	3 cut(s)	19, 148, 177
BtgI	CCRYGG	1 cut(s)	100
BtsI	GCAGTG	2 cut(s)	135, 199
BtsIMutI	CAGTG	2 cut(s)	135, 199
Cac8I	GCNNGC	1 cut(s)	97
CciI	TCATGA	1 cut(s)	64
Cfr13I	GGNCC	2 cut(s)	17, 146
Csp6I	GTAC	2 cut(s)	197, 265
CviAII	CATG	3 cut(s)	53, 65, 125
CviJI	RGCY	9 cut(s)	19, 25, 33, 99, 111, 148, 177, 228, 245
CviKI_1	RGCY	9 cut(s)	19, 25, 33, 99, 111, 148, 177, 228, 245
CviQI	GTAC	2 cut(s)	197, 265
DdeI	CTNAG	1 cut(s)	150
DpnI	GATC	3 cut(s)	159, 170, 311
DpnII	GATC	3 cut(s)	157, 168, 309
Eco130I	CCWWGG	1 cut(s)	20
Eco147I	AGGCCT	1 cut(s)	177
Eco81I	CCTNAGG	1 cut(s)	150
EcoO109I	RGGNCCY	1 cut(s)	146
EcoT14I	CCWWGG	1 cut(s)	20
ErhI	CCWWGG	1 cut(s)	20
FaeI	CATG	3 cut(s)	56, 68, 128
FaiI	YATR	6 cut(s)	30, 54, 66, 126, 237, 249
FatI	CATG	3 cut(s)	52, 64, 124
FbaI	TGATCA	1 cut(s)	168
Fnu4HI	GCNGC	1 cut(s)	34
Fsp4HI	GCNGC	1 cut(s)	34
GluI	GCNGC	1 cut(s)	34
HaeIII	GGCC	3 cut(s)	19, 148, 177
Hin1II	CATG	3 cut(s)	56, 68, 128
HindIII	AAGCTT	1 cut(s)	243
HphI	GGTGA	1 cut(s)	17
Hpy166II	GTNNAC	2 cut(s)	133, 199
Hpy188I	TCNGA	1 cut(s)	168
Hpy188III	TCNNGA	2 cut(s)	65, 287
Hpy8I	GTNNAC	2 cut(s)	133, 199
HpyAV	CCTTC	1 cut(s)	266
HpyCH4III	ACNGT	1 cut(s)	187
HpyCH4IV	ACGT	1 cut(s)	135
HpyCH4V	TGCA	2 cut(s)	128, 259
HpyF10VI	GCNNNNNNNGC	2 cut(s)	42, 92
HpyF3I	CTNAG	1 cut(s)	150
HpySE526I	ACGT	1 cut(s)	135
Hsp92II	CATG	3 cut(s)	56, 68, 128
Ksp22I	TGATCA	1 cut(s)	168
Kzo9I	GATC	3 cut(s)	157, 168, 309
LpnPI	CCDG	5 cut(s)	59, 77, 91, 159, 214
Lsp1109I	GCAGC	1 cut(s)	20
LweI	GCATC	1 cut(s)	172
MaeII	ACGT	1 cut(s)	135
MalI	GATC	3 cut(s)	159, 170, 311
MboI	GATC	3 cut(s)	157, 168, 309
MfeI	CAATTG	1 cut(s)	313
MluCI	AATT	4 cut(s)	254, 278, 293, 313
MnlI	CCTC	4 cut(s)	148, 188, 211, 244
MseI	TTAA	2 cut(s)	297, 306
MslI	CAYNNNNRTG	1 cut(s)	204
MunI	CAATTG	1 cut(s)	313
MwoI	GCNNNNNNNGC	2 cut(s)	42, 92
NdeII	GATC	3 cut(s)	157, 168, 309
NlaIII	CATG	3 cut(s)	56, 68, 128
OliI	CACNNNNGTG	1 cut(s)	204
PagI	TCATGA	1 cut(s)	64
PceI	AGGCCT	1 cut(s)	177
PkrI	GCNGC	1 cut(s)	35
PspPI	GGNCC	2 cut(s)	17, 146
RsaI	GTAC	2 cut(s)	198, 266
RsaNI	GTAC	2 cut(s)	197, 265
RseI	CAYNNNNRTG	1 cut(s)	204
SaqAI	TTAA	2 cut(s)	297, 306
SatI	GCNGC	1 cut(s)	34
Sau3AI	GATC	3 cut(s)	157, 168, 309
Sau96I	GGNCC	2 cut(s)	17, 146
SetI	ASST	3 cut(s)	138, 222, 247
SfaNI	GCATC	1 cut(s)	172
SmiMI	CAYNNNNRTG	1 cut(s)	204
Sse9I	AATT	4 cut(s)	254, 278, 293, 313
SseBI	AGGCCT	1 cut(s)	177
StuI	AGGCCT	1 cut(s)	177
StyI	CCWWGG	1 cut(s)	20
TaaI	ACNGT	1 cut(s)	187
TaiI	ACGT	1 cut(s)	138
TasI	AATT	4 cut(s)	254, 278, 293, 313
TatI	WGTACW	2 cut(s)	196, 264
Tru1I	TTAA	2 cut(s)	297, 306
Tru9I	TTAA	2 cut(s)	297, 306
TscAI	CASTG	2 cut(s)	135, 206
TseI	GCWGC	1 cut(s)	33
TspRI	CASTG	2 cut(s)	135, 206
XapI	RAATTY	2 cut(s)	278, 293

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.