pycom07g26790

Belongs to the yippee family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
Physical Location & Seq
Reverse (-)
26714889 .. 26716143
1255 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g26790.2

Sequence Viewer

Length: 321 bp
ATGGCGGATTTGGTGGGGCCTAGATTGTACAGCTGTTGTAATTGCAGAAACCATGTTTCACTTCATGATGATATCATTTCCAAAGCCTTTCAGGGAAAACATGGCCGAGCCTTTCTGTTCTCCCACGCAATGAATGTTGTTGTTGGGGCAAAAGAAGACAGACGTCTCTTAACCGGTCTGCATACTGTTGCTGATATCCACTGTGGTGATTGCCGTGAGGTGTTGGGCTGGAAGTACGAACGAGCTTATGAGGCATTGCAGAAGTACAAAGAAGGGAAGTTTATATTTGAGAAGTCCAAAATTGTGAAGGAAGATTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

107

Amino Acids

12.2

Weight (kDa)

8.62

Isoelectric Point (pI)

16.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 166
AciI CCGC 1 cut(s) 5
AcoI YGGCCR 1 cut(s) 103
AcyI GRCGYC 1 cut(s) 163
AfaI GTAC 3 cut(s) 29, 236, 266
AgeI ACCGGT 1 cut(s) 173
AleI CACNNNNGTG 1 cut(s) 204
AluBI AGCT 2 cut(s) 33, 245
AluI AGCT 2 cut(s) 33, 245
Alw26I GTCTC 1 cut(s) 170
AoxI GGCC 2 cut(s) 17, 103
AsiGI ACCGGT 1 cut(s) 173
AspS9I GGNCC 1 cut(s) 17
AsuHPI GGTGA 1 cut(s) 218
BbsI GAAGAC 1 cut(s) 162
BceAI ACGGC 1 cut(s) 198
BcoDI GTCTC 1 cut(s) 170
BfaI CTAG 1 cut(s) 21
BmgT120I GGNCC 1 cut(s) 17
BmiI GGNNCC 1 cut(s) 18
BoxI GACNNNNGTC 1 cut(s) 162
BpiI GAAGAC 1 cut(s) 162
BsaHI GRCGYC 1 cut(s) 163
BsaWI WCCGGW 1 cut(s) 173
Bse118I RCCGGY 1 cut(s) 173
Bse3DI GCAATG 2 cut(s) 135, 254
BseMI GCAATG 2 cut(s) 135, 254
BshFI GGCC 2 cut(s) 19, 105
BshTI ACCGGT 1 cut(s) 173
BsiSI CCGG 1 cut(s) 174
BsmAI GTCTC 1 cut(s) 170
BsmBI CGTCTC 1 cut(s) 170
BsnI GGCC 2 cut(s) 19, 105
Bsp1407I TGTACA 1 cut(s) 27
BspACI CCGC 1 cut(s) 5
BspANI GGCC 2 cut(s) 19, 105
BspHI TCATGA 1 cut(s) 64
BspLI GGNNCC 1 cut(s) 18
BsrDI GCAATG 2 cut(s) 135, 254
BsrFI RCCGGY 1 cut(s) 173
BsrGI TGTACA 1 cut(s) 27
BssAI RCCGGY 1 cut(s) 173
BssNI GRCGYC 1 cut(s) 163
Bst4CI ACNGT 2 cut(s) 187, 203
BstACI GRCGYC 1 cut(s) 163
BstAUI TGTACA 1 cut(s) 27
BstMAI GTCTC 1 cut(s) 170
BstMWI GCNNNNNNNGC 1 cut(s) 251
BstPAI GACNNNNGTC 1 cut(s) 162
BstV2I GAAGAC 1 cut(s) 162
BsuRI GGCC 2 cut(s) 19, 105
BtsIMutI CAGTG 1 cut(s) 199
CciI TCATGA 1 cut(s) 64
Cfr10I RCCGGY 1 cut(s) 173
Cfr13I GGNCC 1 cut(s) 17
Csp6I GTAC 3 cut(s) 28, 235, 265
CspAI ACCGGT 1 cut(s) 173
CviAII CATG 3 cut(s) 53, 65, 101
CviJI RGCY 7 cut(s) 19, 33, 86, 105, 110, 228, 245
CviKI_1 RGCY 7 cut(s) 19, 33, 86, 105, 110, 228, 245
CviQI GTAC 3 cut(s) 28, 235, 265
EaeI YGGCCR 1 cut(s) 103
EciI GGCGGA 1 cut(s) 20
Eco32I GATATC 2 cut(s) 73, 196
EcoO109I RGGNCCY 1 cut(s) 17
EcoRV GATATC 2 cut(s) 73, 196
Esp3I CGTCTC 1 cut(s) 170
FaeI CATG 3 cut(s) 56, 68, 104
FaiI YATR 6 cut(s) 54, 66, 102, 183, 249, 284
FatI CATG 3 cut(s) 52, 64, 100
FspBI CTAG 1 cut(s) 21
HaeIII GGCC 2 cut(s) 19, 105
HapII CCGG 1 cut(s) 174
Hin1I GRCGYC 1 cut(s) 163
Hin1II CATG 3 cut(s) 56, 68, 104
HpaII CCGG 1 cut(s) 174
HphI GGTGA 1 cut(s) 218
Hpy188III TCNNGA 1 cut(s) 65
HpyAV CCTTC 2 cut(s) 266, 301
HpyCH4III ACNGT 2 cut(s) 187, 203
HpyCH4IV ACGT 1 cut(s) 163
HpyCH4V TGCA 3 cut(s) 45, 181, 259
HpyF10VI GCNNNNNNNGC 1 cut(s) 251
HpySE526I ACGT 1 cut(s) 163
Hsp92I GRCGYC 1 cut(s) 163
Hsp92II CATG 3 cut(s) 56, 68, 104
LpnPI CCDG 3 cut(s) 77, 187, 214
MaeI CTAG 1 cut(s) 21
MaeII ACGT 1 cut(s) 163
MboII GAAGA 1 cut(s) 167
MluCI AATT 2 cut(s) 40, 300
MnlI CCTC 2 cut(s) 211, 244
MseI TTAA 1 cut(s) 170
MslI CAYNNNNRTG 1 cut(s) 204
MspA1I CMGCKG 1 cut(s) 33
MspI CCGG 1 cut(s) 174
MwoI GCNNNNNNNGC 1 cut(s) 251
NlaIII CATG 3 cut(s) 56, 68, 104
NlaIV GGNNCC 1 cut(s) 18
NmeAIII GCCGAG 1 cut(s) 131
OliI CACNNNNGTG 1 cut(s) 204
PagI TCATGA 1 cut(s) 64
PinAI ACCGGT 1 cut(s) 173
PshAI GACNNNNGTC 1 cut(s) 162
PspN4I GGNNCC 1 cut(s) 18
PspPI GGNCC 1 cut(s) 17
PvuII CAGCTG 1 cut(s) 33
RsaI GTAC 3 cut(s) 29, 236, 266
RsaNI GTAC 3 cut(s) 28, 235, 265
RseI CAYNNNNRTG 1 cut(s) 204
SaqAI TTAA 1 cut(s) 170
Sau96I GGNCC 1 cut(s) 17
SetI ASST 4 cut(s) 35, 166, 222, 247
SmiMI CAYNNNNRTG 1 cut(s) 204
Sse9I AATT 2 cut(s) 40, 300
SsiI CCGC 1 cut(s) 5
SspMI CTAG 1 cut(s) 21
TaaI ACNGT 2 cut(s) 187, 203
TaiI ACGT 1 cut(s) 166
TasI AATT 2 cut(s) 40, 300
TatI WGTACW 2 cut(s) 27, 264
Tru1I TTAA 1 cut(s) 170
Tru9I TTAA 1 cut(s) 170
TscAI CASTG 1 cut(s) 206
TspDTI ATGAA 2 cut(s) 53, 146
TspRI CASTG 1 cut(s) 206
XspI CTAG 1 cut(s) 21
ZraI GACGTC 1 cut(s) 164
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.