Rh1CG274000

Belongs to the yippee family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0000903
Physical Location & Seq
Forward (+)
54074626 .. 54076600
1975 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG274000.1

Sequence Viewer

Length: 300 bp
ATGGCTGATGGGGCTTGGCCAAGGCTATACAGCTGCTACAAGTGCCAGAACCATATATGCTGTCATGATGATATTGTCTCTAAATCTTTTCAGGCTGAAAGTGGCAGAGCCTTTCTGTTCTCTCATGCAATAAATGTGGTGCGACTCATCACCGGCCTCCACACAGTTGCTGATGTACACTGCAGCGATTGCGGGGAGGTGTTGGGTTGGAAATATGTAAAAGCTTACGAACAGTTGCAGAAGTACAAAGAAGGGAAATTTGTGATTGCAAAGTTCAAGATTGTCAAGGCAAACTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Yippee-Mis18

Protein Analysis

99

Amino Acids

11.31

Weight (kDa)

8.76

Isoelectric Point (pI)

16.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Yippee-Mis18 PF03226 10 - 94 2.2e-09 Yippee zinc-binding/DNA-binding /Mis18, centromere assembly
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 192
AcoI YGGCCR 1 cut(s) 17
AcsI RAATTY 1 cut(s) 257
AfaI GTAC 2 cut(s) 177, 245
AgsI TTSAA 1 cut(s) 277
AluBI AGCT 2 cut(s) 33, 224
AluI AGCT 2 cut(s) 33, 224
Alw26I GTCTC 1 cut(s) 82
AlwNI CAGNNNCTG 1 cut(s) 170
AoxI GGCC 2 cut(s) 17, 154
ApeKI GCWGC 2 cut(s) 33, 183
ApoI RAATTY 1 cut(s) 257
AsuHPI GGTGA 1 cut(s) 142
BalI TGGCCA 1 cut(s) 19
BbvI GCAGC 2 cut(s) 20, 195
BccI CCATC 1 cut(s) 2
BcoDI GTCTC 1 cut(s) 82
BfmI CTRYAG 1 cut(s) 181
BisI GCNGC 2 cut(s) 34, 184
BlsI GCNGC 2 cut(s) 35, 185
BsaJI CCNNGG 1 cut(s) 20
Bse118I RCCGGY 1 cut(s) 152
Bse1I ACTGG 1 cut(s) 299
BseDI CCNNGG 1 cut(s) 20
BseNI ACTGG 1 cut(s) 299
BseXI GCAGC 2 cut(s) 20, 195
BshFI GGCC 2 cut(s) 19, 156
BsiSI CCGG 1 cut(s) 153
BsmAI GTCTC 1 cut(s) 82
BsnI GGCC 2 cut(s) 19, 156
Bsp1407I TGTACA 1 cut(s) 175
BspACI CCGC 1 cut(s) 192
BspANI GGCC 2 cut(s) 19, 156
BspHI TCATGA 1 cut(s) 64
BspMAI CTGCAG 1 cut(s) 185
BsrFI RCCGGY 1 cut(s) 152
BsrGI TGTACA 1 cut(s) 175
BsrI ACTGG 1 cut(s) 299
BssAI RCCGGY 1 cut(s) 152
BssECI CCNNGG 1 cut(s) 20
BssT1I CCWWGG 1 cut(s) 20
Bst4CI ACNGT 2 cut(s) 166, 234
BstAPI GCANNNNNTGC 1 cut(s) 189
BstAUI TGTACA 1 cut(s) 175
BstMAI GTCTC 1 cut(s) 82
BstMWI GCNNNNNNNGC 3 cut(s) 11, 42, 189
BstSFI CTRYAG 1 cut(s) 181
BstV1I GCAGC 2 cut(s) 20, 195
BsuRI GGCC 2 cut(s) 19, 156
BtsI GCAGTG 1 cut(s) 178
BtsIMutI CAGTG 1 cut(s) 178
CaiI CAGNNNCTG 1 cut(s) 170
CciI TCATGA 1 cut(s) 64
Cfr10I RCCGGY 1 cut(s) 152
Csp6I GTAC 2 cut(s) 176, 244
CspCI CAANNNNNGTGG 2 cut(s) 117, 152
CviAII CATG 2 cut(s) 65, 125
CviJI RGCY 9 cut(s) 5, 14, 19, 25, 33, 95, 110, 156, 224
CviKI_1 RGCY 9 cut(s) 5, 14, 19, 25, 33, 95, 110, 156, 224
CviQI GTAC 2 cut(s) 176, 244
EaeI YGGCCR 1 cut(s) 17
Eco130I CCWWGG 1 cut(s) 20
EcoT14I CCWWGG 1 cut(s) 20
ErhI CCWWGG 1 cut(s) 20
FaeI CATG 2 cut(s) 68, 128
FaiI YATR 7 cut(s) 28, 54, 56, 58, 66, 126, 216
FatI CATG 2 cut(s) 64, 124
FauI CCCGC 1 cut(s) 185
Fnu4HI GCNGC 2 cut(s) 34, 184
Fsp4HI GCNGC 2 cut(s) 34, 184
GluI GCNGC 2 cut(s) 34, 184
HaeIII GGCC 2 cut(s) 19, 156
HapII CCGG 1 cut(s) 153
Hin1II CATG 2 cut(s) 68, 128
HindIII AAGCTT 1 cut(s) 222
HinfI GANTC 1 cut(s) 144
HpaII CCGG 1 cut(s) 153
HphI GGTGA 1 cut(s) 142
Hpy166II GTNNAC 1 cut(s) 178
Hpy188III TCNNGA 2 cut(s) 65, 277
Hpy8I GTNNAC 1 cut(s) 178
HpyAV CCTTC 1 cut(s) 245
HpyCH4III ACNGT 2 cut(s) 166, 234
HpyCH4V TGCA 4 cut(s) 128, 183, 238, 269
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 42, 189
Hsp92II CATG 2 cut(s) 68, 128
LpnPI CCDG 4 cut(s) 59, 77, 166, 280
Lsp1109I GCAGC 2 cut(s) 20, 195
MlsI TGGCCA 1 cut(s) 19
MluCI AATT 1 cut(s) 257
MluNI TGGCCA 1 cut(s) 19
MlyI GAGTC 1 cut(s) 138
MmeI TCCRAC 1 cut(s) 188
MnlI CCTC 2 cut(s) 167, 190
Mox20I TGGCCA 1 cut(s) 19
MscI TGGCCA 1 cut(s) 19
Msp20I TGGCCA 1 cut(s) 19
MspA1I CMGCKG 1 cut(s) 33
MspI CCGG 1 cut(s) 153
MwoI GCNNNNNNNGC 3 cut(s) 11, 42, 189
NlaIII CATG 2 cut(s) 68, 128
PagI TCATGA 1 cut(s) 64
PkrI GCNGC 2 cut(s) 35, 185
PleI GAGTC 1 cut(s) 138
PpsI GAGTC 1 cut(s) 138
PstI CTGCAG 1 cut(s) 185
PstNI CAGNNNCTG 1 cut(s) 170
PvuII CAGCTG 1 cut(s) 33
RsaI GTAC 2 cut(s) 177, 245
RsaNI GTAC 2 cut(s) 176, 244
SatI GCNGC 2 cut(s) 34, 184
SchI GAGTC 1 cut(s) 138
SetI ASST 3 cut(s) 35, 201, 226
SfcI CTRYAG 1 cut(s) 181
Sse9I AATT 1 cut(s) 257
SsiI CCGC 1 cut(s) 192
StyI CCWWGG 1 cut(s) 20
TaaI ACNGT 2 cut(s) 166, 234
TasI AATT 1 cut(s) 257
TatI WGTACW 2 cut(s) 175, 243
TscAI CASTG 1 cut(s) 185
TseI GCWGC 2 cut(s) 33, 183
TspRI CASTG 1 cut(s) 185
XapI RAATTY 1 cut(s) 257
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.