MD07G1154300.v1.1

Belongs to the yippee family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0000903
Physical Location & Seq
Forward (+)
22401054 .. 22402473
1420 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1154300.v1.1.491

Sequence Viewer

Length: 321 bp
ATGGCTGATTTAGCTGGGCCAAGGTTGTATGGCTGCTACAAGTGCCAGAATCACGTTTGCTGTCATGATGATATTGTCTCTAAAGCTTTTCAGGCAAGCCGTGGCAGGGCCTTTCTGTTCTCCCATGCAACGAACGTGGTCGTAGGGCCTAAAGAGGATCGGCATCTGATCACAGGTCTCCACACAGTTGCTGATGTACACTGCTGTGATTGTGGGGAGGTATTAGGCTGGAAATATGTCAAGGCTTATGAGGAATTGCAGAAGTACAAAGAAGGAAAATTCGTTCTTGAAAAATTTAAGATTGTTAAGGTCAATTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Yippee-Mis18

Protein Analysis

107

Amino Acids

12.06

Weight (kDa)

8.47

Isoelectric Point (pI)

11.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Yippee-Mis18 PF03226 10 - 103 2.6e-12 Yippee zinc-binding/DNA-binding /Mis18, centromere assembly
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 165
AcsI RAATTY 2 cut(s) 278, 293
AfaI GTAC 2 cut(s) 198, 266
AfiI CCNNNNNNNGG 1 cut(s) 106
AgsI TTSAA 1 cut(s) 290
AleI CACNNNNGTG 1 cut(s) 204
AloI GAACNNNNNNTCC 2 cut(s) 267, 299
AluBI AGCT 2 cut(s) 14, 86
AluI AGCT 2 cut(s) 14, 86
Alw26I GTCTC 2 cut(s) 82, 182
AlwI GGATC 1 cut(s) 165
AlwNI CAGNNNCTG 1 cut(s) 191
AoxI GGCC 3 cut(s) 17, 108, 146
ApeKI GCWGC 1 cut(s) 33
ApoI RAATTY 2 cut(s) 278, 293
AspS9I GGNCC 3 cut(s) 17, 108, 146
BbvI GCAGC 1 cut(s) 20
BceAI ACGGC 1 cut(s) 84
BclI TGATCA 1 cut(s) 168
BcoDI GTCTC 2 cut(s) 82, 182
BisI GCNGC 1 cut(s) 34
BlsI GCNGC 1 cut(s) 35
BmgT120I GGNCC 3 cut(s) 17, 108, 146
BmsI GCATC 1 cut(s) 172
BsaBI GATNNNNATC 1 cut(s) 162
BsaI GGTCTC 1 cut(s) 182
BsaJI CCNNGG 2 cut(s) 20, 100
Bsc4I CCNNNNNNNGG 1 cut(s) 106
Bse8I GATNNNNATC 1 cut(s) 162
BseDI CCNNGG 2 cut(s) 20, 100
BseJI GATNNNNATC 1 cut(s) 162
BseLI CCNNNNNNNGG 1 cut(s) 106
BseXI GCAGC 1 cut(s) 20
BseYI CCCAGC 1 cut(s) 14
BshFI GGCC 3 cut(s) 19, 110, 148
BslI CCNNNNNNNGG 1 cut(s) 106
BsmAI GTCTC 2 cut(s) 82, 182
BsnI GGCC 3 cut(s) 19, 110, 148
Bso31I GGTCTC 1 cut(s) 182
Bsp1407I TGTACA 1 cut(s) 196
Bsp143I GATC 2 cut(s) 157, 168
BspANI GGCC 3 cut(s) 19, 110, 148
BspHI TCATGA 1 cut(s) 64
BspPI GGATC 1 cut(s) 165
BspTNI GGTCTC 1 cut(s) 182
BsrGI TGTACA 1 cut(s) 196
BssECI CCNNGG 2 cut(s) 20, 100
BssMI GATC 2 cut(s) 157, 168
BssT1I CCWWGG 1 cut(s) 20
Bst4CI ACNGT 1 cut(s) 187
BstAUI TGTACA 1 cut(s) 196
BstC8I GCNNGC 1 cut(s) 97
BstDSI CCRYGG 1 cut(s) 100
BstKTI GATC 2 cut(s) 160, 171
BstMAI GTCTC 2 cut(s) 82, 182
BstMBI GATC 2 cut(s) 157, 168
BstMWI GCNNNNNNNGC 3 cut(s) 11, 42, 92
BstV1I GCAGC 1 cut(s) 20
BsuRI GGCC 3 cut(s) 19, 110, 148
BtgI CCRYGG 1 cut(s) 100
BtsI GCAGTG 1 cut(s) 199
BtsIMutI CAGTG 1 cut(s) 199
Cac8I GCNNGC 1 cut(s) 97
CaiI CAGNNNCTG 1 cut(s) 191
CciI TCATGA 1 cut(s) 64
Cfr13I GGNCC 3 cut(s) 17, 108, 146
Csp6I GTAC 2 cut(s) 197, 265
CspCI CAANNNNNGTGG 2 cut(s) 117, 152
CviAII CATG 2 cut(s) 65, 125
CviQI GTAC 2 cut(s) 197, 265
DpnI GATC 2 cut(s) 159, 170
DpnII GATC 2 cut(s) 157, 168
Eco130I CCWWGG 1 cut(s) 20
Eco31I GGTCTC 1 cut(s) 182
EcoO109I RGGNCCY 2 cut(s) 108, 146
EcoT14I CCWWGG 1 cut(s) 20
ErhI CCWWGG 1 cut(s) 20
FaeI CATG 2 cut(s) 68, 128
FaiI YATR 5 cut(s) 30, 66, 126, 237, 249
FatI CATG 2 cut(s) 64, 124
FbaI TGATCA 1 cut(s) 168
Fnu4HI GCNGC 1 cut(s) 34
Fsp4HI GCNGC 1 cut(s) 34
GluI GCNGC 1 cut(s) 34
GsaI CCCAGC 1 cut(s) 18
HaeIII GGCC 3 cut(s) 19, 110, 148
Hin1II CATG 2 cut(s) 68, 128
HindIII AAGCTT 1 cut(s) 84
HinfI GANTC 1 cut(s) 49
Hpy166II GTNNAC 1 cut(s) 199
Hpy188I TCNGA 1 cut(s) 168
Hpy188III TCNNGA 2 cut(s) 65, 287
Hpy8I GTNNAC 1 cut(s) 199
HpyAV CCTTC 1 cut(s) 266
HpyCH4III ACNGT 1 cut(s) 187
HpyCH4IV ACGT 2 cut(s) 54, 135
HpyCH4V TGCA 2 cut(s) 128, 259
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 42, 92
HpySE526I ACGT 2 cut(s) 54, 135
Hsp92II CATG 2 cut(s) 68, 128
Ksp22I TGATCA 1 cut(s) 168
Kzo9I GATC 2 cut(s) 157, 168
LpnPI CCDG 5 cut(s) 59, 77, 91, 159, 214
Lsp1109I GCAGC 1 cut(s) 20
LweI GCATC 1 cut(s) 172
MaeII ACGT 2 cut(s) 54, 135
MalI GATC 2 cut(s) 159, 170
MboI GATC 2 cut(s) 157, 168
MfeI CAATTG 1 cut(s) 313
MluCI AATT 4 cut(s) 254, 278, 293, 313
MnlI CCTC 3 cut(s) 148, 211, 244
MseI TTAA 2 cut(s) 297, 306
MslI CAYNNNNRTG 1 cut(s) 204
MunI CAATTG 1 cut(s) 313
MwoI GCNNNNNNNGC 3 cut(s) 11, 42, 92
NdeII GATC 2 cut(s) 157, 168
NlaIII CATG 2 cut(s) 68, 128
OliI CACNNNNGTG 1 cut(s) 204
PagI TCATGA 1 cut(s) 64
PfeI GAWTC 1 cut(s) 49
PkrI GCNGC 1 cut(s) 35
PspFI CCCAGC 1 cut(s) 14
PspPI GGNCC 3 cut(s) 17, 108, 146
PstNI CAGNNNCTG 1 cut(s) 191
RsaI GTAC 2 cut(s) 198, 266
RsaNI GTAC 2 cut(s) 197, 265
RseI CAYNNNNRTG 1 cut(s) 204
SaqAI TTAA 2 cut(s) 297, 306
SatI GCNGC 1 cut(s) 34
Sau3AI GATC 2 cut(s) 157, 168
Sau96I GGNCC 3 cut(s) 17, 108, 146
SetI ASST 8 cut(s) 16, 26, 57, 88, 138, 178, 222, 312
SfaNI GCATC 1 cut(s) 172
SmiMI CAYNNNNRTG 1 cut(s) 204
Sse9I AATT 4 cut(s) 254, 278, 293, 313
StyI CCWWGG 1 cut(s) 20
TaaI ACNGT 1 cut(s) 187
TaiI ACGT 2 cut(s) 57, 138
TasI AATT 4 cut(s) 254, 278, 293, 313
TatI WGTACW 2 cut(s) 196, 264
TfiI GAWTC 1 cut(s) 49
Tru1I TTAA 2 cut(s) 297, 306
Tru9I TTAA 2 cut(s) 297, 306
TscAI CASTG 1 cut(s) 206
TseI GCWGC 1 cut(s) 33
TspRI CASTG 1 cut(s) 206
XapI RAATTY 2 cut(s) 278, 293
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.