pycom06g10880

Belongs to the yippee family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0000903
Physical Location & Seq
Reverse (-)
16096406 .. 16097372
967 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g10880.1

Sequence Viewer

Length: 321 bp
ATGGCGGGATTGGTTGGGCCGAGGTTGTACAGCTGCTGCAATTGCCGAAACCATGTTGCCCTTCACGACGATGTCATTTCGAAAGCCTTTCAGGGTAGAAATGGTCGAGCGTTTCTGTTTTCACATGCAATGAACATTACAGTCGGGCCAAAAGAAGACAGACAACTCATGACTGGTCTGCACACGGTCGCTGATGTTTCCTGCTGCGACTGCCATGAGGTGCTGGGTTGGAAGTATGAACGTGCCTATGAGCAAACACAGAAGTACAAGGAAGGGAAATTCATTCTCGAGAAATCGAAGATAGTCAAGGAAGACTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Yippee-Mis18

Protein Analysis

107

Amino Acids

12.12

Weight (kDa)

8.23

Isoelectric Point (pI)

26.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Yippee-Mis18 PF03226 10 - 102 1.7e-12 Yippee zinc-binding/DNA-binding /Mis18, centromere assembly
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 5
AcsI RAATTY 1 cut(s) 278
AfaI GTAC 2 cut(s) 29, 266
AluBI AGCT 1 cut(s) 33
AluI AGCT 1 cut(s) 33
AlwNI CAGNNNCTG 1 cut(s) 36
Ama87I CYCGRG 1 cut(s) 287
AoxI GGCC 2 cut(s) 17, 146
ApeKI GCWGC 3 cut(s) 33, 36, 204
ApoI RAATTY 1 cut(s) 278
AspS9I GGNCC 2 cut(s) 17, 146
AsuII TTCGAA 1 cut(s) 80
AvaI CYCGRG 1 cut(s) 287
BbsI GAAGAC 1 cut(s) 162
BbvI GCAGC 3 cut(s) 20, 23, 191
BisI GCNGC 3 cut(s) 34, 37, 205
BlsI GCNGC 3 cut(s) 35, 38, 206
BmeT110I CYCGRG 1 cut(s) 287
BmgT120I GGNCC 2 cut(s) 17, 146
BpiI GAAGAC 1 cut(s) 162
Bpu14I TTCGAA 1 cut(s) 80
BsaJI CCNNGG 1 cut(s) 20
Bse1I ACTGG 2 cut(s) 178, 320
Bse3DI GCAATG 1 cut(s) 135
BseDI CCNNGG 1 cut(s) 20
BseMI GCAATG 1 cut(s) 135
BseNI ACTGG 2 cut(s) 178, 320
BseXI GCAGC 3 cut(s) 20, 23, 191
BseYI CCCAGC 1 cut(s) 223
BsgI GTGCAG 1 cut(s) 164
Bsh1285I CGRYCG 1 cut(s) 189
BshFI GGCC 2 cut(s) 19, 148
BsiEI CGRYCG 1 cut(s) 189
BsiHKCI CYCGRG 1 cut(s) 287
BsnI GGCC 2 cut(s) 19, 148
BsoBI CYCGRG 1 cut(s) 287
Bsp119I TTCGAA 1 cut(s) 80
Bsp1407I TGTACA 1 cut(s) 27
BspACI CCGC 1 cut(s) 5
BspANI GGCC 2 cut(s) 19, 148
BspHI TCATGA 1 cut(s) 168
BspT104I TTCGAA 1 cut(s) 80
BsrDI GCAATG 1 cut(s) 135
BsrGI TGTACA 1 cut(s) 27
BsrI ACTGG 2 cut(s) 178, 320
BssECI CCNNGG 1 cut(s) 20
Bst4CI ACNGT 2 cut(s) 142, 187
BstAUI TGTACA 1 cut(s) 27
BstBI TTCGAA 1 cut(s) 80
BstMCI CGRYCG 1 cut(s) 189
BstMWI GCNNNNNNNGC 2 cut(s) 42, 210
BstNSI RCATGY 1 cut(s) 128
BstV1I GCAGC 3 cut(s) 20, 23, 191
BstV2I GAAGAC 1 cut(s) 162
BsuRI GGCC 2 cut(s) 19, 148
CaiI CAGNNNCTG 1 cut(s) 36
CciI TCATGA 1 cut(s) 168
Cfr13I GGNCC 2 cut(s) 17, 146
Csp6I GTAC 2 cut(s) 28, 265
CviAII CATG 4 cut(s) 53, 125, 169, 215
CviJI RGCY 4 cut(s) 19, 33, 86, 148
CviKI_1 RGCY 4 cut(s) 19, 33, 86, 148
CviQI GTAC 2 cut(s) 28, 265
Eco88I CYCGRG 1 cut(s) 287
FaeI CATG 4 cut(s) 56, 128, 172, 218
FaiI YATR 6 cut(s) 54, 126, 170, 216, 237, 249
FatI CATG 4 cut(s) 52, 124, 168, 214
Fnu4HI GCNGC 3 cut(s) 34, 37, 205
Fsp4HI GCNGC 3 cut(s) 34, 37, 205
GluI GCNGC 3 cut(s) 34, 37, 205
GsaI CCCAGC 1 cut(s) 227
HaeIII GGCC 2 cut(s) 19, 148
Hin1II CATG 4 cut(s) 56, 128, 172, 218
Hpy188III TCNNGA 4 cut(s) 65, 169, 287, 289
Hpy99I CGWCG 1 cut(s) 71
HpyAV CCTTC 2 cut(s) 71, 266
HpyCH4III ACNGT 2 cut(s) 142, 187
HpyCH4IV ACGT 1 cut(s) 241
HpyCH4V TGCA 3 cut(s) 39, 128, 181
HpyF10VI GCNNNNNNNGC 2 cut(s) 42, 210
HpySE526I ACGT 1 cut(s) 241
Hsp92II CATG 4 cut(s) 56, 128, 172, 218
LpnPI CCDG 5 cut(s) 77, 159, 209, 214, 301
Lsp1109I GCAGC 3 cut(s) 20, 23, 191
MaeII ACGT 1 cut(s) 241
MboII GAAGA 2 cut(s) 167, 310
MfeI CAATTG 1 cut(s) 40
MluCI AATT 2 cut(s) 40, 278
MmeI TCCRAC 1 cut(s) 209
MnlI CCTC 2 cut(s) 15, 211
MslI CAYNNNNRTG 1 cut(s) 69
MspA1I CMGCKG 1 cut(s) 33
MunI CAATTG 1 cut(s) 40
MwoI GCNNNNNNNGC 2 cut(s) 42, 210
NlaIII CATG 4 cut(s) 56, 128, 172, 218
NmeAIII GCCGAG 1 cut(s) 45
NspI RCATGY 1 cut(s) 128
NspV TTCGAA 1 cut(s) 80
PaeR7I CTCGAG 1 cut(s) 287
PagI TCATGA 1 cut(s) 168
PflFI GACNNNGTC 1 cut(s) 71
PkrI GCNGC 3 cut(s) 35, 38, 206
PspFI CCCAGC 1 cut(s) 223
PspPI GGNCC 2 cut(s) 17, 146
PstNI CAGNNNCTG 1 cut(s) 36
PsyI GACNNNGTC 1 cut(s) 71
PvuII CAGCTG 1 cut(s) 33
RsaI GTAC 2 cut(s) 29, 266
RsaNI GTAC 2 cut(s) 28, 265
RseI CAYNNNNRTG 1 cut(s) 69
SatI GCNGC 3 cut(s) 34, 37, 205
Sau96I GGNCC 2 cut(s) 17, 146
SetI ASST 4 cut(s) 26, 35, 222, 244
Sfr274I CTCGAG 1 cut(s) 287
SfuI TTCGAA 1 cut(s) 80
SlaI CTCGAG 1 cut(s) 287
SmiMI CAYNNNNRTG 1 cut(s) 69
SmlI CTYRAG 1 cut(s) 287
SmoI CTYRAG 1 cut(s) 287
Sse9I AATT 2 cut(s) 40, 278
SsiI CCGC 1 cut(s) 5
TaaI ACNGT 2 cut(s) 142, 187
TaiI ACGT 1 cut(s) 244
TaqI TCGA 4 cut(s) 80, 106, 288, 296
TasI AATT 2 cut(s) 40, 278
TatI WGTACW 2 cut(s) 27, 264
TseI GCWGC 3 cut(s) 33, 36, 204
TspDTI ATGAA 3 cut(s) 146, 252, 271
Tth111I GACNNNGTC 1 cut(s) 71
XapI RAATTY 1 cut(s) 278
XceI RCATGY 1 cut(s) 128
XhoI CTCGAG 1 cut(s) 287
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.