Rorug01G0278600

Belongs to the yippee family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000903
Physical Location & Seq
Forward (+)
39186670 .. 39187230
561 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0278600.1

Sequence Viewer

Length: 561 bp
ATGAATAGCTTCCTTTCAAGAGAGTCTATTCTTGTCATTTTGCTTTTAGCGATTTGCTTTGTTAGTGAAGCTCAAAAATGTCGTCCAAGTGGAATGATAAGAGGAAAGAAGTCTCCTTCTGGACAATGTAACCAGGAGCAAGACCCTGACTGTTGTAGACCGGGTAAAATGTACCCGACCTACACATGCTCGCCCGCAGTGTCTGGGAACACCCACGCCTACCTCACTCTCAACAGTTTCGAGGCAGGTGGTGATGGCAGCCTTCCATCAGAATGCGATAACAAATACCACAATGACAGCACTCCAATCGTGGCACTCTCCACTGGATGGTACAAGAATGGAGGAAGGTGCCATAACAACATTAAAATTACTGCTAATGATCGCAGTGTGGTGGCCATGGTGGTAGATGAATGTGACTCTACTAGGGGATGTGATGCAGATCATGACTACCTGCCTCCTTGTGCTAACAACATTATTGTTGCCTCCAAGGCTGTTTGGGAAGGCTTGCATGTGTCTAAAGAAAACTGGGGCGGATTAGATGTCACCTGGAATGACGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Yippee-Mis18

Protein Analysis

186

Amino Acids

20.21

Weight (kDa)

5.46

Isoelectric Point (pI)

51.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KWL1 PF24300 14 - 186 2.4e-56 Kiwellin-1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 236
Acc36I ACCTGC 2 cut(s) 236, 459
AccB1I GGYRCC 1 cut(s) 348
AccB7I CCANNNNNTGG 1 cut(s) 327
AccI GTMKAC 1 cut(s) 157
AciI CCGC 2 cut(s) 195, 531
AcoI YGGCCR 1 cut(s) 393
AcyI GRCGYC 1 cut(s) 555
AfaI GTAC 2 cut(s) 173, 332
AfiI CCNNNNNNNGG 1 cut(s) 327
AgsI TTSAA 1 cut(s) 18
AjnI CCWGG 2 cut(s) 132, 545
AluBI AGCT 2 cut(s) 9, 71
AluI AGCT 2 cut(s) 9, 71
Alw26I GTCTC 1 cut(s) 117
AlwNI CAGNNNCTG 1 cut(s) 203
AoxI GGCC 1 cut(s) 393
ApeKI GCWGC 1 cut(s) 258
ArsI GACNNNNNNTTYG 2 cut(s) 67, 99
Asp700I GAANNNNTTC 1 cut(s) 8
AsuC2I CCSGG 1 cut(s) 162
AsuHPI GGTGA 2 cut(s) 263, 535
BalI TGGCCA 1 cut(s) 395
BanI GGYRCC 1 cut(s) 348
BbvI GCAGC 1 cut(s) 270
BccI CCATC 3 cut(s) 248, 274, 321
BcgI CGANNNNNNTGC 2 cut(s) 289, 323
BciT130I CCWGG 2 cut(s) 134, 547
BcnI CCSGG 1 cut(s) 162
BcoDI GTCTC 1 cut(s) 117
BfaI CTAG 1 cut(s) 423
BfuAI ACCTGC 2 cut(s) 236, 459
BglI GCCNNNNNGGC 1 cut(s) 488
BisI GCNGC 1 cut(s) 259
BlsI GCNGC 1 cut(s) 260
Bme1390I CCNGG 3 cut(s) 134, 162, 547
BmiI GGNNCC 1 cut(s) 350
BmrFI CCNGG 3 cut(s) 134, 162, 547
BmrI ACTGGG 1 cut(s) 535
BmsI GCATC 1 cut(s) 424
BmuI ACTGGG 1 cut(s) 535
BpuMI CCSGG 1 cut(s) 162
BsaBI GATNNNNATC 1 cut(s) 438
BsaHI GRCGYC 1 cut(s) 555
BsaJI CCNNGG 2 cut(s) 396, 486
Bsc4I CCNNNNNNNGG 1 cut(s) 327
Bse1I ACTGG 2 cut(s) 328, 530
Bse8I GATNNNNATC 1 cut(s) 438
BseBI CCWGG 2 cut(s) 134, 547
BseDI CCNNGG 2 cut(s) 396, 486
BseGI GGATG 2 cut(s) 332, 434
BseJI GATNNNNATC 1 cut(s) 438
BseLI CCNNNNNNNGG 1 cut(s) 327
BseNI ACTGG 2 cut(s) 328, 530
BseXI GCAGC 1 cut(s) 270
BshFI GGCC 1 cut(s) 395
BshNI GGYRCC 1 cut(s) 348
BsiSI CCGG 1 cut(s) 161
BslI CCNNNNNNNGG 1 cut(s) 327
BsmAI GTCTC 1 cut(s) 117
BsmI GAATGC 1 cut(s) 278
BsnI GGCC 1 cut(s) 395
Bsp143I GATC 2 cut(s) 379, 439
Bsp19I CCATGG 1 cut(s) 396
BspACI CCGC 2 cut(s) 195, 531
BspANI GGCC 1 cut(s) 395
BspHI TCATGA 1 cut(s) 442
BspLI GGNNCC 1 cut(s) 350
BspMI ACCTGC 2 cut(s) 236, 459
BspT107I GGYRCC 1 cut(s) 348
BsrI ACTGG 2 cut(s) 328, 530
BssECI CCNNGG 2 cut(s) 396, 486
BssMI GATC 2 cut(s) 379, 439
BssNI GRCGYC 1 cut(s) 555
BssT1I CCWWGG 2 cut(s) 396, 486
Bst2UI CCWGG 2 cut(s) 134, 547
Bst4CI ACNGT 2 cut(s) 152, 236
BstACI GRCGYC 1 cut(s) 555
BstC8I GCNNGC 3 cut(s) 191, 195, 506
BstDSI CCRYGG 1 cut(s) 396
BstF5I GGATG 2 cut(s) 332, 434
BstKTI GATC 2 cut(s) 382, 442
BstMAI GTCTC 1 cut(s) 117
BstMBI GATC 2 cut(s) 379, 439
BstMWI GCNNNNNNNGC 1 cut(s) 488
BstNI CCWGG 2 cut(s) 134, 547
BstNSI RCATGY 2 cut(s) 189, 512
BstSCI CCNGG 3 cut(s) 132, 160, 545
BstV1I GCAGC 1 cut(s) 270
BsuRI GGCC 1 cut(s) 395
BtgI CCRYGG 1 cut(s) 396
BtsCI GGATG 2 cut(s) 332, 434
BtsI GCAGTG 2 cut(s) 204, 391
BtsIMutI CAGTG 3 cut(s) 204, 321, 391
BveI ACCTGC 2 cut(s) 236, 459
Cac8I GCNNGC 3 cut(s) 191, 195, 506
CaiI CAGNNNCTG 1 cut(s) 203
CciI TCATGA 1 cut(s) 442
Csp6I GTAC 2 cut(s) 172, 331
CviAII CATG 4 cut(s) 186, 397, 443, 509
CviJI RGCY 6 cut(s) 9, 71, 261, 395, 491, 504
CviKI_1 RGCY 6 cut(s) 9, 71, 261, 395, 491, 504
CviQI GTAC 2 cut(s) 172, 331
DpnI GATC 2 cut(s) 381, 441
DpnII GATC 2 cut(s) 379, 439
EaeI YGGCCR 1 cut(s) 393
EciI GGCGGA 1 cut(s) 546
Eco130I CCWWGG 2 cut(s) 396, 486
EcoRII CCWGG 2 cut(s) 132, 545
EcoT14I CCWWGG 2 cut(s) 396, 486
ErhI CCWWGG 2 cut(s) 396, 486
FaeI CATG 4 cut(s) 189, 400, 446, 512
FaiI YATR 5 cut(s) 187, 354, 398, 444, 510
FatI CATG 4 cut(s) 185, 396, 442, 508
FauI CCCGC 1 cut(s) 202
FblI GTMKAC 1 cut(s) 157
Fnu4HI GCNGC 1 cut(s) 259
FokI GGATG 2 cut(s) 339, 441
Fsp4HI GCNGC 1 cut(s) 259
FspBI CTAG 1 cut(s) 423
GluI GCNGC 1 cut(s) 259
HaeIII GGCC 1 cut(s) 395
HapII CCGG 1 cut(s) 161
Hin1I GRCGYC 1 cut(s) 555
Hin1II CATG 4 cut(s) 189, 400, 446, 512
HinfI GANTC 2 cut(s) 23, 416
HpaII CCGG 1 cut(s) 161
HphI GGTGA 2 cut(s) 263, 535
Hpy166II GTNNAC 1 cut(s) 158
Hpy188I TCNGA 1 cut(s) 271
Hpy188III TCNNGA 3 cut(s) 18, 120, 443
Hpy8I GTNNAC 1 cut(s) 158
HpyAV CCTTC 4 cut(s) 126, 272, 339, 494
HpyCH4III ACNGT 2 cut(s) 152, 236
HpyCH4V TGCA 2 cut(s) 437, 508
HpyF10VI GCNNNNNNNGC 1 cut(s) 488
Hsp92I GRCGYC 1 cut(s) 555
Hsp92II CATG 4 cut(s) 189, 400, 446, 512
Kzo9I GATC 2 cut(s) 379, 439
LmnI GCTCC 1 cut(s) 136
Lsp1109I GCAGC 1 cut(s) 270
LweI GCATC 1 cut(s) 424
MaeI CTAG 1 cut(s) 423
MaeIII GTNAC 3 cut(s) 128, 413, 541
MalI GATC 2 cut(s) 381, 441
MboI GATC 2 cut(s) 379, 439
MlsI TGGCCA 1 cut(s) 395
MluCI AATT 1 cut(s) 366
MluNI TGGCCA 1 cut(s) 395
MlyI GAGTC 2 cut(s) 32, 410
MnlI CCTC 6 cut(s) 95, 233, 235, 335, 465, 493
Mox20I TGGCCA 1 cut(s) 395
MroXI GAANNNNTTC 1 cut(s) 8
MscI TGGCCA 1 cut(s) 395
MseI TTAA 1 cut(s) 363
MslI CAYNNNNRTG 1 cut(s) 271
Msp20I TGGCCA 1 cut(s) 395
MspI CCGG 1 cut(s) 161
MspR9I CCNGG 3 cut(s) 134, 162, 547
Mva1269I GAATGC 1 cut(s) 278
MvaI CCWGG 2 cut(s) 134, 547
MwoI GCNNNNNNNGC 1 cut(s) 488
NciI CCSGG 1 cut(s) 162
NcoI CCATGG 1 cut(s) 396
NdeII GATC 2 cut(s) 379, 439
NlaIII CATG 4 cut(s) 189, 400, 446, 512
NlaIV GGNNCC 1 cut(s) 350
NmuCI GTSAC 2 cut(s) 413, 541
NspI RCATGY 2 cut(s) 189, 512
PagI TCATGA 1 cut(s) 442
PaqCI CACCTGC 1 cut(s) 236
PctI GAATGC 1 cut(s) 278
PdmI GAANNNNTTC 1 cut(s) 8
PflMI CCANNNNNTGG 1 cut(s) 327
PkrI GCNGC 1 cut(s) 260
PleI GAGTC 2 cut(s) 31, 410
PpsI GAGTC 2 cut(s) 31, 410
Psp6I CCWGG 2 cut(s) 132, 545
PspGI CCWGG 2 cut(s) 132, 545
PspN4I GGNNCC 1 cut(s) 350
PstNI CAGNNNCTG 1 cut(s) 203
RsaI GTAC 2 cut(s) 173, 332
RsaNI GTAC 2 cut(s) 172, 331
RseI CAYNNNNRTG 1 cut(s) 271
SaqAI TTAA 1 cut(s) 363
SatI GCNGC 1 cut(s) 259
Sau3AI GATC 2 cut(s) 379, 439
SchI GAGTC 2 cut(s) 32, 410
ScrFI CCNGG 3 cut(s) 134, 162, 547
SetI ASST 8 cut(s) 11, 73, 182, 225, 250, 350, 453, 548
SfaNI GCATC 1 cut(s) 424
SmiMI CAYNNNNRTG 1 cut(s) 271
Sse9I AATT 1 cut(s) 366
SsiI CCGC 2 cut(s) 195, 531
SspMI CTAG 1 cut(s) 423
StyD4I CCNGG 3 cut(s) 132, 160, 545
StyI CCWWGG 2 cut(s) 396, 486
TaaI ACNGT 2 cut(s) 152, 236
TaqI TCGA 1 cut(s) 240
TasI AATT 1 cut(s) 366
Tru1I TTAA 1 cut(s) 363
Tru9I TTAA 1 cut(s) 363
TscAI CASTG 3 cut(s) 204, 328, 391
TseFI GTSAC 2 cut(s) 413, 541
TseI GCWGC 1 cut(s) 258
Tsp45I GTSAC 2 cut(s) 413, 541
TspDTI ATGAA 2 cut(s) 17, 423
TspRI CASTG 3 cut(s) 204, 328, 391
Van91I CCANNNNNTGG 1 cut(s) 327
XceI RCATGY 2 cut(s) 189, 512
XmiI GTMKAC 1 cut(s) 157
XmnI GAANNNNTTC 1 cut(s) 8
XspI CTAG 1 cut(s) 423
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.