Rw1G041440

Belongs to the yippee family

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
Physical Location & Seq
Reverse (-)
68294630 .. 68295432
803 bp
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UTR
Exon/CDS
Intron
Rw1G041440.1

Sequence Viewer

Length: 321 bp
ATGGCGGATTTGGTAGGGCCTAGATTGTACAGCTGCTGTAATTGCCGAAACCATGTTTCACTTCATGATGATATAGTTTCTAAAGCTTTTCAGGGAAAACACGGTCGAGCTTTTCTGTTCTCCCATGCGATGAATATAGTTGTTGGGGCGAAGGAAGACAGGCATCTGATGACCGGTCTGCATACTGTGGCTGACATCTCTTGCGGCGACTGCCATGAGGTATTGGGGTGGAAGTATGAAAGAGCCTATGAGGCTTCACAGAAGTACAAGGAAGGGAAGTTCATATTTGAGAAGTCGAAAATTGTAAAGGAGGGTTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

106

Amino Acids

12.05

Weight (kDa)

8.29

Isoelectric Point (pI)

18.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Yippee-Mis18 PF03226 10 - 102 1.7e-13 Yippee zinc-binding/DNA-binding /Mis18, centromere assembly
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 5, 204
AfaI GTAC 2 cut(s) 29, 266
AgeI ACCGGT 1 cut(s) 173
AloI GAACNNNNNNTCC 2 cut(s) 263, 295
AluBI AGCT 3 cut(s) 33, 86, 110
AluI AGCT 3 cut(s) 33, 86, 110
AlwNI CAGNNNCTG 1 cut(s) 36
AoxI GGCC 1 cut(s) 17
ApeKI GCWGC 1 cut(s) 33
AsiGI ACCGGT 1 cut(s) 173
AspS9I GGNCC 1 cut(s) 17
BbsI GAAGAC 1 cut(s) 162
BbvI GCAGC 1 cut(s) 20
BfaI CTAG 1 cut(s) 21
BglI GCCNNNNNGGC 1 cut(s) 251
BisI GCNGC 2 cut(s) 34, 205
BlsI GCNGC 2 cut(s) 35, 206
BmgT120I GGNCC 1 cut(s) 17
BmsI GCATC 1 cut(s) 172
BpiI GAAGAC 1 cut(s) 162
BsaWI WCCGGW 1 cut(s) 173
BsaXI ACNNNNNCTCC 1 cut(s) 302
Bse118I RCCGGY 1 cut(s) 173
BseXI GCAGC 1 cut(s) 20
Bsh1285I CGRYCG 1 cut(s) 106
BshFI GGCC 1 cut(s) 19
BshTI ACCGGT 1 cut(s) 173
BsiEI CGRYCG 1 cut(s) 106
BsiSI CCGG 1 cut(s) 174
BsnI GGCC 1 cut(s) 19
Bsp1407I TGTACA 1 cut(s) 27
BspACI CCGC 2 cut(s) 5, 204
BspANI GGCC 1 cut(s) 19
BspHI TCATGA 1 cut(s) 64
BsrFI RCCGGY 1 cut(s) 173
BsrGI TGTACA 1 cut(s) 27
BssAI RCCGGY 1 cut(s) 173
Bst4CI ACNGT 2 cut(s) 104, 187
BstAUI TGTACA 1 cut(s) 27
BstMCI CGRYCG 1 cut(s) 106
BstMWI GCNNNNNNNGC 3 cut(s) 42, 210, 251
BstV1I GCAGC 1 cut(s) 20
BstV2I GAAGAC 1 cut(s) 162
BsuRI GGCC 1 cut(s) 19
BtgZI GCGATG 1 cut(s) 143
CaiI CAGNNNCTG 1 cut(s) 36
CciI TCATGA 1 cut(s) 64
Cfr10I RCCGGY 1 cut(s) 173
Cfr13I GGNCC 1 cut(s) 17
Csp6I GTAC 2 cut(s) 28, 265
CspAI ACCGGT 1 cut(s) 173
CviAII CATG 4 cut(s) 53, 65, 125, 215
CviJI RGCY 7 cut(s) 19, 33, 86, 110, 191, 245, 254
CviKI_1 RGCY 7 cut(s) 19, 33, 86, 110, 191, 245, 254
CviQI GTAC 2 cut(s) 28, 265
EciI GGCGGA 1 cut(s) 20
EcoO109I RGGNCCY 1 cut(s) 17
FaeI CATG 4 cut(s) 56, 68, 128, 218
FatI CATG 4 cut(s) 52, 64, 124, 214
Fnu4HI GCNGC 2 cut(s) 34, 205
Fsp4HI GCNGC 2 cut(s) 34, 205
FspBI CTAG 1 cut(s) 21
GluI GCNGC 2 cut(s) 34, 205
HaeIII GGCC 1 cut(s) 19
HapII CCGG 1 cut(s) 174
Hin1II CATG 4 cut(s) 56, 68, 128, 218
HindIII AAGCTT 1 cut(s) 84
HpaII CCGG 1 cut(s) 174
Hpy188I TCNGA 1 cut(s) 168
Hpy188III TCNNGA 1 cut(s) 65
HpyAV CCTTC 2 cut(s) 145, 266
HpyCH4III ACNGT 2 cut(s) 104, 187
HpyCH4V TGCA 1 cut(s) 181
HpyF10VI GCNNNNNNNGC 3 cut(s) 42, 210, 251
Hsp92II CATG 4 cut(s) 56, 68, 128, 218
LpnPI CCDG 3 cut(s) 77, 145, 187
Lsp1109I GCAGC 1 cut(s) 20
LweI GCATC 1 cut(s) 172
MaeI CTAG 1 cut(s) 21
MboII GAAGA 1 cut(s) 167
MluCI AATT 2 cut(s) 40, 300
MnlI CCTC 3 cut(s) 211, 244, 304
MspA1I CMGCKG 1 cut(s) 33
MspI CCGG 1 cut(s) 174
MwoI GCNNNNNNNGC 3 cut(s) 42, 210, 251
NlaIII CATG 4 cut(s) 56, 68, 128, 218
PagI TCATGA 1 cut(s) 64
PinAI ACCGGT 1 cut(s) 173
PkrI GCNGC 2 cut(s) 35, 206
PspPI GGNCC 1 cut(s) 17
PstNI CAGNNNCTG 1 cut(s) 36
PvuII CAGCTG 1 cut(s) 33
RsaI GTAC 2 cut(s) 29, 266
RsaNI GTAC 2 cut(s) 28, 265
SatI GCNGC 2 cut(s) 34, 205
Sau96I GGNCC 1 cut(s) 17
SetI ASST 4 cut(s) 35, 88, 112, 222
SfaNI GCATC 1 cut(s) 172
Sse9I AATT 2 cut(s) 40, 300
SsiI CCGC 2 cut(s) 5, 204
SspMI CTAG 1 cut(s) 21
TaaI ACNGT 2 cut(s) 104, 187
TaqI TCGA 2 cut(s) 106, 296
TasI AATT 2 cut(s) 40, 300
TatI WGTACW 2 cut(s) 27, 264
TauI GCSGC 1 cut(s) 207
TseI GCWGC 1 cut(s) 33
TspDTI ATGAA 4 cut(s) 53, 146, 252, 271
XspI CTAG 1 cut(s) 21
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.