Prupe.2G193000_v2.0.a1

positive regulation of cellular senescence

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0000903
Physical Location & Seq
Forward (+)
23174733 .. 23176311
1579 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G193000.3

Sequence Viewer

Length: 321 bp
ATGGAGGATTTAGCTGGGCCAAGGCTGTATGGCTGCTACAAGTGCCAGAACCATGTTTGCTGTCATGATGGTATTGTCTCCAAAGATTTTCAGGCAAGCCGGGGCAGAGCGTTTCTGTTCTCCCATGCAATGAATGTGTCTGTAGGGCTTACAGAGGACCGATATCTCATCACAGGCCTGCACGCAGTTGCAGATGTACACTGCTGTGATTGTAAGGAAGTGTTGGGCTGGAAATATGTAAAAGCCTATGAGGAATTGCAGAAGTACAAAGAAGGAAAGTTTGTTCTTGAAAAATTTAAGATTGTCAAGGTGAATTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Yippee-Mis18

Protein Analysis

107

Amino Acids

12.18

Weight (kDa)

8.15

Isoelectric Point (pI)

13.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 293
AfaI GTAC 2 cut(s) 198, 266
AgsI TTSAA 1 cut(s) 290
AleI CACNNNNGTG 1 cut(s) 204
AloI GAACNNNNNNTCC 2 cut(s) 267, 299
AluBI AGCT 1 cut(s) 14
AluI AGCT 1 cut(s) 14
Alw26I GTCTC 1 cut(s) 82
AoxI GGCC 2 cut(s) 17, 175
ApeKI GCWGC 1 cut(s) 33
ApoI RAATTY 1 cut(s) 293
AspS9I GGNCC 2 cut(s) 17, 157
AsuC2I CCSGG 1 cut(s) 101
AvaII GGWCC 1 cut(s) 157
BbvI GCAGC 1 cut(s) 20
BccI CCATC 1 cut(s) 62
BcnI CCSGG 1 cut(s) 101
BcoDI GTCTC 1 cut(s) 82
BfmI CTRYAG 1 cut(s) 141
BisI GCNGC 1 cut(s) 34
BlsI GCNGC 1 cut(s) 35
Bme1390I CCNGG 1 cut(s) 101
Bme18I GGWCC 1 cut(s) 157
BmgT120I GGNCC 2 cut(s) 17, 157
BmrFI CCNGG 1 cut(s) 101
BpuMI CCSGG 1 cut(s) 101
BsaJI CCNNGG 2 cut(s) 20, 100
Bse3DI GCAATG 1 cut(s) 135
BseDI CCNNGG 2 cut(s) 20, 100
BseMI GCAATG 1 cut(s) 135
BseXI GCAGC 1 cut(s) 20
BseYI CCCAGC 1 cut(s) 14
BsgI GTGCAG 1 cut(s) 164
BshFI GGCC 2 cut(s) 19, 177
BsiSI CCGG 1 cut(s) 100
BsmAI GTCTC 1 cut(s) 82
BsnI GGCC 2 cut(s) 19, 177
Bsp1407I TGTACA 1 cut(s) 196
BspANI GGCC 2 cut(s) 19, 177
BspHI TCATGA 1 cut(s) 64
BsrDI GCAATG 1 cut(s) 135
BsrGI TGTACA 1 cut(s) 196
BssECI CCNNGG 2 cut(s) 20, 100
BssT1I CCWWGG 1 cut(s) 20
BstAUI TGTACA 1 cut(s) 196
BstC8I GCNNGC 3 cut(s) 97, 179, 183
BstMAI GTCTC 1 cut(s) 82
BstMWI GCNNNNNNNGC 1 cut(s) 42
BstSCI CCNGG 1 cut(s) 99
BstSFI CTRYAG 1 cut(s) 141
BstV1I GCAGC 1 cut(s) 20
BsuRI GGCC 2 cut(s) 19, 177
BtsI GCAGTG 1 cut(s) 199
BtsIMutI CAGTG 1 cut(s) 199
Cac8I GCNNGC 3 cut(s) 97, 179, 183
CciI TCATGA 1 cut(s) 64
Cfr13I GGNCC 2 cut(s) 17, 157
Csp6I GTAC 2 cut(s) 197, 265
CviAII CATG 3 cut(s) 53, 65, 125
CviJI RGCY 9 cut(s) 14, 19, 25, 33, 99, 148, 177, 228, 245
CviKI_1 RGCY 9 cut(s) 14, 19, 25, 33, 99, 148, 177, 228, 245
CviQI GTAC 2 cut(s) 197, 265
Eco130I CCWWGG 1 cut(s) 20
Eco147I AGGCCT 1 cut(s) 177
Eco32I GATATC 1 cut(s) 164
Eco47I GGWCC 1 cut(s) 157
EcoRV GATATC 1 cut(s) 164
EcoT14I CCWWGG 1 cut(s) 20
ErhI CCWWGG 1 cut(s) 20
FaeI CATG 3 cut(s) 56, 68, 128
FaiI YATR 6 cut(s) 30, 54, 66, 126, 237, 249
FatI CATG 3 cut(s) 52, 64, 124
Fnu4HI GCNGC 1 cut(s) 34
Fsp4HI GCNGC 1 cut(s) 34
GluI GCNGC 1 cut(s) 34
GsaI CCCAGC 1 cut(s) 18
HaeIII GGCC 2 cut(s) 19, 177
HapII CCGG 1 cut(s) 100
Hin1II CATG 3 cut(s) 56, 68, 128
HpaII CCGG 1 cut(s) 100
Hpy166II GTNNAC 1 cut(s) 199
Hpy188III TCNNGA 2 cut(s) 65, 287
Hpy8I GTNNAC 1 cut(s) 199
HpyAV CCTTC 1 cut(s) 266
HpyCH4V TGCA 4 cut(s) 128, 181, 191, 259
HpyF10VI GCNNNNNNNGC 1 cut(s) 42
Hsp92II CATG 3 cut(s) 56, 68, 128
LpnPI CCDG 6 cut(s) 59, 77, 113, 159, 191, 214
Lsp1109I GCAGC 1 cut(s) 20
MluCI AATT 3 cut(s) 254, 293, 313
MnlI CCTC 2 cut(s) 148, 244
MseI TTAA 1 cut(s) 297
MslI CAYNNNNRTG 1 cut(s) 204
MspI CCGG 1 cut(s) 100
MspR9I CCNGG 1 cut(s) 101
MwoI GCNNNNNNNGC 1 cut(s) 42
NciI CCSGG 1 cut(s) 101
NlaIII CATG 3 cut(s) 56, 68, 128
OliI CACNNNNGTG 1 cut(s) 204
PagI TCATGA 1 cut(s) 64
PceI AGGCCT 1 cut(s) 177
PkrI GCNGC 1 cut(s) 35
PspFI CCCAGC 1 cut(s) 14
PspPI GGNCC 2 cut(s) 17, 157
RsaI GTAC 2 cut(s) 198, 266
RsaNI GTAC 2 cut(s) 197, 265
RseI CAYNNNNRTG 1 cut(s) 204
SaqAI TTAA 1 cut(s) 297
SatI GCNGC 1 cut(s) 34
Sau96I GGNCC 2 cut(s) 17, 157
ScrFI CCNGG 1 cut(s) 101
SetI ASST 2 cut(s) 16, 312
SfcI CTRYAG 1 cut(s) 141
SinI GGWCC 1 cut(s) 157
SmiMI CAYNNNNRTG 1 cut(s) 204
Sse9I AATT 3 cut(s) 254, 293, 313
SseBI AGGCCT 1 cut(s) 177
StuI AGGCCT 1 cut(s) 177
StyD4I CCNGG 1 cut(s) 99
StyI CCWWGG 1 cut(s) 20
TaqII GACCGA 1 cut(s) 174
TasI AATT 3 cut(s) 254, 293, 313
TatI WGTACW 2 cut(s) 196, 264
Tru1I TTAA 1 cut(s) 297
Tru9I TTAA 1 cut(s) 297
TscAI CASTG 1 cut(s) 206
TseI GCWGC 1 cut(s) 33
TspDTI ATGAA 1 cut(s) 146
TspRI CASTG 1 cut(s) 206
VpaK11BI GGWCC 1 cut(s) 157
XapI RAATTY 1 cut(s) 293
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.