Rroxscaffold_4G00296070

Belongs to the yippee family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000903
Physical Location & Seq
Reverse (-)
16170450 .. 16171651
1202 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00296070.1

Sequence Viewer

Length: 321 bp
ATGGCTGATGGGGCTTGGCCAAGGCTATACAGCTGCTACAAGTGCCAGAACCATATATGCTGTCATGATGATATTGTCTCTAAATCTTTTCAGGCTGAAAGTGGCAGAGCCTTTCTGTTCTCTCATGCAATAAATGTGGTCCAAGGGCCTAAAGAGGACCGGCGACTCATCACCGGCCTCCACACAGTTGCTGATGTACACTGCAGCGATTGCGGGGAGGTGTTGGGTTGGAAATATGTAAAAGCTTACGAACAGTTGCAGAAGTACAAAGAAGGGAAATTTGTGATTGCAAAGTTCAAGATTGTCAAGGCAAACTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Yippee-Mis18

Protein Analysis

106

Amino Acids

12.13

Weight (kDa)

8.75

Isoelectric Point (pI)

22.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Yippee-Mis18 PF03226 10 - 101 1.3e-11 Yippee zinc-binding/DNA-binding /Mis18, centromere assembly
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 213
AcoI YGGCCR 1 cut(s) 17
AcsI RAATTY 1 cut(s) 278
AfaI GTAC 2 cut(s) 198, 266
AgsI TTSAA 1 cut(s) 298
AluBI AGCT 2 cut(s) 33, 245
AluI AGCT 2 cut(s) 33, 245
Alw26I GTCTC 1 cut(s) 82
AlwNI CAGNNNCTG 1 cut(s) 191
AoxI GGCC 3 cut(s) 17, 146, 175
ApeKI GCWGC 2 cut(s) 33, 204
ApoI RAATTY 1 cut(s) 278
AspS9I GGNCC 3 cut(s) 139, 146, 157
AsuHPI GGTGA 1 cut(s) 163
AvaII GGWCC 2 cut(s) 139, 157
BalI TGGCCA 1 cut(s) 19
BbvI GCAGC 2 cut(s) 20, 216
BccI CCATC 1 cut(s) 2
BcoDI GTCTC 1 cut(s) 82
BfmI CTRYAG 1 cut(s) 202
BisI GCNGC 2 cut(s) 34, 205
BlsI GCNGC 2 cut(s) 35, 206
Bme18I GGWCC 2 cut(s) 139, 157
BmgT120I GGNCC 3 cut(s) 139, 146, 157
BsaJI CCNNGG 2 cut(s) 20, 142
Bse118I RCCGGY 2 cut(s) 159, 173
Bse1I ACTGG 1 cut(s) 320
BseDI CCNNGG 2 cut(s) 20, 142
BseNI ACTGG 1 cut(s) 320
BseXI GCAGC 2 cut(s) 20, 216
BshFI GGCC 3 cut(s) 19, 148, 177
BsiSI CCGG 2 cut(s) 160, 174
BsmAI GTCTC 1 cut(s) 82
BsnI GGCC 3 cut(s) 19, 148, 177
Bsp1407I TGTACA 1 cut(s) 196
BspACI CCGC 1 cut(s) 213
BspANI GGCC 3 cut(s) 19, 148, 177
BspHI TCATGA 1 cut(s) 64
BspMAI CTGCAG 1 cut(s) 206
BsrFI RCCGGY 2 cut(s) 159, 173
BsrGI TGTACA 1 cut(s) 196
BsrI ACTGG 1 cut(s) 320
BssAI RCCGGY 2 cut(s) 159, 173
BssECI CCNNGG 2 cut(s) 20, 142
BssT1I CCWWGG 2 cut(s) 20, 142
Bst4CI ACNGT 2 cut(s) 187, 255
BstAPI GCANNNNNTGC 1 cut(s) 210
BstAUI TGTACA 1 cut(s) 196
BstMAI GTCTC 1 cut(s) 82
BstMWI GCNNNNNNNGC 3 cut(s) 11, 42, 210
BstSFI CTRYAG 1 cut(s) 202
BstV1I GCAGC 2 cut(s) 20, 216
BsuRI GGCC 3 cut(s) 19, 148, 177
BtsI GCAGTG 1 cut(s) 199
BtsIMutI CAGTG 1 cut(s) 199
CaiI CAGNNNCTG 1 cut(s) 191
CciI TCATGA 1 cut(s) 64
Cfr10I RCCGGY 2 cut(s) 159, 173
Cfr13I GGNCC 3 cut(s) 139, 146, 157
Csp6I GTAC 2 cut(s) 197, 265
CspCI CAANNNNNGTGG 2 cut(s) 117, 152
CviAII CATG 2 cut(s) 65, 125
CviQI GTAC 2 cut(s) 197, 265
EaeI YGGCCR 1 cut(s) 17
Eco130I CCWWGG 2 cut(s) 20, 142
Eco47I GGWCC 2 cut(s) 139, 157
EcoO109I RGGNCCY 1 cut(s) 146
EcoT14I CCWWGG 2 cut(s) 20, 142
ErhI CCWWGG 2 cut(s) 20, 142
FaeI CATG 2 cut(s) 68, 128
FaiI YATR 7 cut(s) 28, 54, 56, 58, 66, 126, 237
FatI CATG 2 cut(s) 64, 124
FauI CCCGC 1 cut(s) 206
Fnu4HI GCNGC 2 cut(s) 34, 205
Fsp4HI GCNGC 2 cut(s) 34, 205
GluI GCNGC 2 cut(s) 34, 205
HaeIII GGCC 3 cut(s) 19, 148, 177
HapII CCGG 2 cut(s) 160, 174
Hin1II CATG 2 cut(s) 68, 128
HindIII AAGCTT 1 cut(s) 243
HinfI GANTC 1 cut(s) 165
HpaII CCGG 2 cut(s) 160, 174
HphI GGTGA 1 cut(s) 163
Hpy166II GTNNAC 1 cut(s) 199
Hpy188III TCNNGA 2 cut(s) 65, 298
Hpy8I GTNNAC 1 cut(s) 199
HpyAV CCTTC 1 cut(s) 266
HpyCH4III ACNGT 2 cut(s) 187, 255
HpyCH4V TGCA 4 cut(s) 128, 204, 259, 290
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 42, 210
Hsp92II CATG 2 cut(s) 68, 128
LpnPI CCDG 5 cut(s) 59, 77, 173, 187, 301
Lsp1109I GCAGC 2 cut(s) 20, 216
MlsI TGGCCA 1 cut(s) 19
MluCI AATT 1 cut(s) 278
MluNI TGGCCA 1 cut(s) 19
MlyI GAGTC 1 cut(s) 159
MmeI TCCRAC 1 cut(s) 209
MnlI CCTC 3 cut(s) 148, 188, 211
Mox20I TGGCCA 1 cut(s) 19
MscI TGGCCA 1 cut(s) 19
Msp20I TGGCCA 1 cut(s) 19
MspA1I CMGCKG 1 cut(s) 33
MspI CCGG 2 cut(s) 160, 174
MwoI GCNNNNNNNGC 3 cut(s) 11, 42, 210
NlaIII CATG 2 cut(s) 68, 128
PagI TCATGA 1 cut(s) 64
PkrI GCNGC 2 cut(s) 35, 206
PleI GAGTC 1 cut(s) 159
PpsI GAGTC 1 cut(s) 159
PspPI GGNCC 3 cut(s) 139, 146, 157
PstI CTGCAG 1 cut(s) 206
PstNI CAGNNNCTG 1 cut(s) 191
PvuII CAGCTG 1 cut(s) 33
RsaI GTAC 2 cut(s) 198, 266
RsaNI GTAC 2 cut(s) 197, 265
SatI GCNGC 2 cut(s) 34, 205
Sau96I GGNCC 3 cut(s) 139, 146, 157
SchI GAGTC 1 cut(s) 159
SetI ASST 3 cut(s) 35, 222, 247
SfcI CTRYAG 1 cut(s) 202
SinI GGWCC 2 cut(s) 139, 157
Sse9I AATT 1 cut(s) 278
SsiI CCGC 1 cut(s) 213
StyI CCWWGG 2 cut(s) 20, 142
TaaI ACNGT 2 cut(s) 187, 255
TasI AATT 1 cut(s) 278
TatI WGTACW 2 cut(s) 196, 264
TscAI CASTG 1 cut(s) 206
TseI GCWGC 2 cut(s) 33, 204
TspRI CASTG 1 cut(s) 206
VpaK11BI GGWCC 2 cut(s) 139, 157
XapI RAATTY 1 cut(s) 278
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.