Rorug01G0278500

Belongs to the yippee family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000903
Physical Location & Seq
Reverse (-)
39181368 .. 39184294
2927 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0278500.1

Sequence Viewer

Length: 2166 bp
ATGGCTTGCCACAAAGTAGCAGCTGCTTCCTTTCAACTTCTTTCTCTAGTTAGTTTCCTTCTTTTCTTAAATCCATATTCTTCTATTTTCCTTGAAGCCTCAACAATATTTGCCAACTCCAATACTGTCGATGATGAGAGGTCCAATGCAGCTTGCATTGAGGAAGAGAGGAAGGCCCTCCTTGAATTCAAGCAAGGGCTTCAAGACCCTTTGCTTGAGCTTCATTCTTGGGTTGGCAAAGACTGCTGCAACTGGCATGGCATAGTCTGCAACAATCAAACAGGTAACATCATCGATCTTCGTCTTCAAGATGCACAAATCTCTGGTACACTTTCAATGTCAATAGGAAGTCTTTCCACTCTTTCGCATTTGGAGACCTTGATTCTTAGCAGCAATTCGTTCTCTGGTCCACTTCCGATATCAGTCGGAAATCTTTTACACTTGGGGTACTTGGACCTTTCTTCAAACTCAATCTCCGGTCCACTTCCGATATCAATCGAAAATCTTTTACATTTGGGGTACTTGGACCTTTCTTCAAACTCAATCTCCGGTCCACTTCCGATATCAATCGGAAATCTTTTACATTTGGAGTACTTGGACCTTTCTTTAAACTCAATCTCCGGTCCACTTCCGATATCAATCGGAAATCTTTCGAATTTACAGAACTTAAACATTTTTTCAAACTCAATCTCCGGTTCACTTCCAACATCGATTGGAAATCTTTCAAATTTACAGAACTTACAGCTTTTTTCAAACTCAATCTCCGGTCCACTTCCAACATCGATTGGAGGTCTTTCACATTTGCAGACCTTGTTCCTTTCTTTAAACTCAATCTCCGGTCCACTTCCAACATCGATTGGAAGTCTTTCACATTTGCAGACCTTGTTCCTTTCTTTAAACTCAATCTCCGGTCCACTTCCAACATCGATTGGAAGTCTTTCACATTTGCAGACCTTGTCCCTTTCTTCAAACTCAATCTCCGGTCCACTTCCAACATCGATTGGAAATCTTTCAAATTTGCAGACCTTGGACCTTTCCAATAATCCAATCTCAGGTCCATTTCCGATATCAATCAGAAATCTTTCAAATTTGCAGGAGCTGCACCTCGCAGGGAGTGCAATCTCAGGTCCACTTCCAACATGGATAGGAAATCTGCCACGTTTACGGTGGCTGGAACTTTCCAACAACTCAAAAATGAATGGAACTATTCCAGAAAGCATTGGACAACTTAGAGAGTTAAAGAACCTGTTCCTCCACGGTTGTTCATGGGAAGGCTTTATATCTGAAAATCATTTTCAGAACACTAGCAGATTGGATTCGTTTTATTTATCCAGCGTGGCATCTAACTCTTTGGTTTTCAACGTCAGTCATGACTGGATTCCTATCTTCAATCTTACATGTCTTCAAATCATTGATTGTAAACTAATGGATACTGCATTTCCTGTGTGGCTCAGAAGTCAAAAATTCCTCAATTACTTAACTCTTGAGAGAGTCGGAATTTCAGATACAATACCCGATTGGTTTTGGAGATTTTCACCATTCCTTGATGGTGTGATATTATCTCATAACCAGTTAAGAGGAAACCTTCCCAAGTCTGTGAGTTCTCCTCTTCAAAACGTTATTTTGAAAAATAACAGTTTGGTAGGTTCCCTTCCACTTTGGCCAAATGTAACACAACTAAGCTTGGCAAGCAATAGATTTTCAGGGCCTATTCCTTTGAACATTGGCCACGAGATGTCAAAGTTGGTGTTTCTTGATCTCTCAAGGAATTATTTCTCTGGAAATATTCCTAGGGATTGGATGGGTTTGCTAGATTTGAAGATCATAGACTTTTCAAATAACAAGCTATCTGGTGAAATCCCAAGCTCCATGTGCTCCCAACTACCATCACTCAAATGGTTGAGATTAAGCAACAACAATCTTTCTGGGAATCTTGAGTCGTCTTTGCAAACTTGCAGAAATCTCTCTGCACTTGATCTAACAGGAAACAACTTTTCCGGCACCATACCAGATTATATTGGAGACAACCTTCATACATCGTCTTATTTACTTCTAGGAGCCAACAAGTTCACAGGAAATATTCCTCATCAATTATGCGATCTCTCCTCTCTTCAGGTTTTAGACCTTTCCCAAAAGGGAAAATTTCGCAAACAGTACACAAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Yippee-Mis18

Protein Analysis

721

Amino Acids

78.57

Weight (kDa)

6.04

Isoelectric Point (pI)

38.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 54 - 91 3.5e-10 Leucine rich repeat N-terminal domain
LRR_14 PF23598 166 - 252 6.5e-14 Leucine-rich repeat region
LRR_14 PF23598 257 - 323 1.8e-08 Leucine-rich repeat region
LRR_8 PF13855 266 - 326 4.2e-06 Leucine rich repeat
LRR_8 PF13855 290 - 350 7.6e-08 Leucine rich repeat
LRR_14 PF23598 309 - 494 1.1e-19 Leucine-rich repeat region
LRR_8 PF13855 314 - 372 1.8e-08 Leucine rich repeat
LRR_8 PF13855 362 - 421 6.7e-07 Leucine rich repeat
LRR_8 PF13855 582 - 641 6.1e-07 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 2000
AclI AACGTT 1 cut(s) 1617
AcoI YGGCCR 2 cut(s) 1661, 1726
AcsI RAATTY 8 cut(s) 185, 655, 727, 1015, 1087, 1463, 1497, 2141
AcuI CTGAAG 1 cut(s) 2096
AfaI GTAC 5 cut(s) 328, 449, 521, 593, 2156
AfiI CCNNNNNNNGG 1 cut(s) 1052
AflIII ACRYGT 1 cut(s) 1397
AluBI AGCT 8 cut(s) 23, 152, 220, 745, 1099, 1683, 1846, 1866
AluI AGCT 8 cut(s) 23, 152, 220, 745, 1099, 1683, 1846, 1866
Alw21I GWGCWC 1 cut(s) 1877
Alw26I GTCTC 2 cut(s) 368, 2016
AlwNI CAGNNNCTG 1 cut(s) 1099
AoxI GGCC 4 cut(s) 174, 1661, 1706, 1726
ApeKI GCWGC 6 cut(s) 20, 23, 149, 246, 390, 1099
ApoI RAATTY 8 cut(s) 185, 655, 727, 1015, 1087, 1463, 1497, 2141
Asp700I GAANNNNTTC 9 cut(s) 352, 649, 721, 865, 937, 1009, 1081, 1247, 1772
AspA2I CCTAGG 1 cut(s) 1790
AsuHPI GGTGA 2 cut(s) 1527, 1865
AsuII TTCGAA 1 cut(s) 653
AvrII CCTAGG 1 cut(s) 1790
BalI TGGCCA 2 cut(s) 1663, 1728
BanI GGYRCC 1 cut(s) 2000
BarI GAAGNNNNNNTAC 2 cut(s) 1635, 1667
BauI CACGAG 1 cut(s) 1730
BbsI GAAGAC 2 cut(s) 296, 1394
Bbv12I GWGCWC 1 cut(s) 1877
BbvI GCAGC 6 cut(s) 10, 32, 161, 233, 402, 1086
BccI CCATC 3 cut(s) 1541, 1795, 1894
BciVI GTATCC 1 cut(s) 1423
BcoDI GTCTC 2 cut(s) 368, 2016
BfaI CTAG 5 cut(s) 47, 1305, 1791, 1811, 2054
BfuI GTATCC 1 cut(s) 1423
BisI GCNGC 6 cut(s) 21, 24, 150, 247, 391, 1100
BlnI CCTAGG 1 cut(s) 1790
BlsI GCNGC 6 cut(s) 22, 25, 151, 248, 392, 1101
BmcAI AGTACT 1 cut(s) 593
BmiI GGNNCC 3 cut(s) 1648, 2002, 2059
BmsI GCATC 2 cut(s) 301, 1349
BpiI GAAGAC 2 cut(s) 296, 1394
BplI GAGNNNNNCTC 2 cut(s) 1591, 1623
Bpu14I TTCGAA 1 cut(s) 653
BpuEI CTTGAG 4 cut(s) 236, 1505, 1747, 1955
Bsa29I ATCGAT 6 cut(s) 294, 710, 782, 854, 926, 998
BsaBI GATNNNNATC 5 cut(s) 494, 566, 638, 1070, 1382
BsaI GGTCTC 1 cut(s) 368
BsaJI CCNNGG 3 cut(s) 1026, 1255, 1790
BsaWI WCCGGW 8 cut(s) 476, 548, 620, 692, 764, 836, 908, 980
Bsc4I CCNNNNNNNGG 1 cut(s) 1052
Bse1I ACTGG 3 cut(s) 257, 1379, 1570
Bse8I GATNNNNATC 5 cut(s) 494, 566, 638, 1070, 1382
BseCI ATCGAT 6 cut(s) 294, 710, 782, 854, 926, 998
BseDI CCNNGG 3 cut(s) 1026, 1255, 1790
BseGI GGATG 1 cut(s) 1806
BseJI GATNNNNATC 5 cut(s) 494, 566, 638, 1070, 1382
BseLI CCNNNNNNNGG 1 cut(s) 1052
BseMII CTCAG 3 cut(s) 1065, 1137, 1465
BseNI ACTGG 3 cut(s) 257, 1379, 1570
BseRI GAGGAG 2 cut(s) 1596, 2095
BseXI GCAGC 6 cut(s) 10, 32, 161, 233, 402, 1086
BsgI GTGCAG 2 cut(s) 1085, 1953
BshFI GGCC 4 cut(s) 176, 1663, 1708, 1728
BshNI GGYRCC 1 cut(s) 2000
BshVI ATCGAT 6 cut(s) 294, 710, 782, 854, 926, 998
BsiHKAI GWGCWC 1 cut(s) 1877
BsiSI CCGG 9 cut(s) 477, 549, 621, 693, 765, 837, 909, 981, 1998
BslFI GGGAC 1 cut(s) 943
BslI CCNNNNNNNGG 1 cut(s) 1052
BsmAI GTCTC 2 cut(s) 368, 2016
BsmFI GGGAC 1 cut(s) 943
BsnI GGCC 4 cut(s) 176, 1663, 1708, 1728
Bso31I GGTCTC 1 cut(s) 368
Bsp119I TTCGAA 1 cut(s) 653
Bsp1286I GDGCHC 1 cut(s) 1877
Bsp143I GATC 5 cut(s) 295, 1756, 1821, 1975, 2098
BspANI GGCC 4 cut(s) 176, 1663, 1708, 1728
BspCNI CTCAG 3 cut(s) 1064, 1136, 1464
BspDI ATCGAT 6 cut(s) 294, 710, 782, 854, 926, 998
BspHI TCATGA 1 cut(s) 1369
BspLI GGNNCC 3 cut(s) 1648, 2002, 2059
BspT104I TTCGAA 1 cut(s) 653
BspT107I GGYRCC 1 cut(s) 2000
BspTNI GGTCTC 1 cut(s) 368
BsrI ACTGG 3 cut(s) 257, 1379, 1570
BssECI CCNNGG 3 cut(s) 1026, 1255, 1790
BssMI GATC 5 cut(s) 295, 1756, 1821, 1975, 2098
BssSI CACGAG 1 cut(s) 1730
BssT1I CCWWGG 2 cut(s) 1026, 1790
Bst2BI CACGAG 1 cut(s) 1730
Bst4CI ACNGT 5 cut(s) 127, 1167, 1259, 1637, 2154
Bst6I CTCTTC 3 cut(s) 159, 1614, 2115
BstAPI GCANNNNNTGC 4 cut(s) 243, 267, 1099, 1115
BstBI TTCGAA 1 cut(s) 653
BstC8I GCNNGC 3 cut(s) 7, 154, 1690
BstDEI CTNAG 6 cut(s) 386, 1051, 1123, 1229, 1451, 1679
BstDSI CCRYGG 1 cut(s) 1255
BstF5I GGATG 1 cut(s) 1806
BstKTI GATC 5 cut(s) 298, 1759, 1824, 1978, 2101
BstMAI GTCTC 2 cut(s) 368, 2016
BstMBI GATC 5 cut(s) 295, 1756, 1821, 1975, 2098
BstMWI GCNNNNNNNGC 6 cut(s) 243, 267, 1099, 1115, 1689, 1872
BstNSI RCATGY 1 cut(s) 1401
BstV1I GCAGC 6 cut(s) 10, 32, 161, 233, 402, 1086
BstV2I GAAGAC 2 cut(s) 296, 1394
Bsu15I ATCGAT 6 cut(s) 294, 710, 782, 854, 926, 998
BsuI GTATCC 1 cut(s) 1423
BsuRI GGCC 4 cut(s) 176, 1663, 1708, 1728
BsuTUI ATCGAT 6 cut(s) 294, 710, 782, 854, 926, 998
BtgI CCRYGG 1 cut(s) 1255
BtsCI GGATG 1 cut(s) 1806
Cac8I GCNNGC 3 cut(s) 7, 154, 1690
CaiI CAGNNNCTG 1 cut(s) 1099
CciI TCATGA 1 cut(s) 1369
ClaI ATCGAT 6 cut(s) 294, 710, 782, 854, 926, 998
Csp6I GTAC 5 cut(s) 327, 448, 520, 592, 2155
CviAII CATG 6 cut(s) 257, 1140, 1266, 1370, 1398, 1870
CviQI GTAC 5 cut(s) 327, 448, 520, 592, 2155
DdeI CTNAG 6 cut(s) 386, 1051, 1123, 1229, 1451, 1679
DpnI GATC 5 cut(s) 297, 1758, 1823, 1977, 2100
DpnII GATC 5 cut(s) 295, 1756, 1821, 1975, 2098
DraI TTTAAA 3 cut(s) 609, 825, 897
EaeI YGGCCR 2 cut(s) 1661, 1726
Eam1104I CTCTTC 3 cut(s) 159, 1614, 2115
EarI CTCTTC 3 cut(s) 159, 1614, 2115
Eco130I CCWWGG 2 cut(s) 1026, 1790
Eco31I GGTCTC 1 cut(s) 368
Eco32I GATATC 5 cut(s) 420, 492, 564, 636, 1068
Eco57I CTGAAG 1 cut(s) 2096
EcoO109I RGGNCCY 2 cut(s) 175, 1706
EcoRI GAATTC 1 cut(s) 185
EcoRV GATATC 5 cut(s) 420, 492, 564, 636, 1068
EcoT14I CCWWGG 2 cut(s) 1026, 1790
ErhI CCWWGG 2 cut(s) 1026, 1790
FaeI CATG 6 cut(s) 260, 1143, 1269, 1373, 1401, 1873
FaqI GGGAC 1 cut(s) 943
FatI CATG 6 cut(s) 256, 1139, 1265, 1369, 1397, 1869
Fnu4HI GCNGC 6 cut(s) 21, 24, 150, 247, 391, 1100
FokI GGATG 1 cut(s) 1813
Fsp4HI GCNGC 6 cut(s) 21, 24, 150, 247, 391, 1100
FspBI CTAG 5 cut(s) 47, 1305, 1791, 1811, 2054
GluI GCNGC 6 cut(s) 21, 24, 150, 247, 391, 1100
HaeIII GGCC 4 cut(s) 176, 1663, 1708, 1728
HapII CCGG 9 cut(s) 477, 549, 621, 693, 765, 837, 909, 981, 1998
Hin1II CATG 6 cut(s) 260, 1143, 1269, 1373, 1401, 1873
HindIII AAGCTT 1 cut(s) 1681
HinfI GANTC 6 cut(s) 382, 1316, 1378, 1491, 1930, 1937
HpaII CCGG 9 cut(s) 477, 549, 621, 693, 765, 837, 909, 981, 1998
HphI GGTGA 2 cut(s) 1527, 1865
Hpy188III TCNNGA 8 cut(s) 203, 308, 1211, 1370, 1484, 1754, 1779, 1934
HpyAV CCTTC 6 cut(s) 68, 166, 1265, 1595, 1661, 2039
HpyCH4III ACNGT 5 cut(s) 127, 1167, 1259, 1637, 2154
HpyCH4IV ACGT 3 cut(s) 1159, 1362, 1617
HpyF10VI GCNNNNNNNGC 6 cut(s) 243, 267, 1099, 1115, 1689, 1872
HpyF3I CTNAG 6 cut(s) 386, 1051, 1123, 1229, 1451, 1679
HpySE526I ACGT 3 cut(s) 1159, 1362, 1617
Hsp92II CATG 6 cut(s) 260, 1143, 1269, 1373, 1401, 1873
Kzo9I GATC 5 cut(s) 295, 1756, 1821, 1975, 2098
LmnI GCTCC 4 cut(s) 1096, 1871, 1880, 2057
Lsp1109I GCAGC 6 cut(s) 10, 32, 161, 233, 402, 1086
LweI GCATC 2 cut(s) 301, 1349
MaeI CTAG 5 cut(s) 47, 1305, 1791, 1811, 2054
MaeII ACGT 3 cut(s) 1159, 1362, 1617
MaeIII GTNAC 2 cut(s) 284, 1669
MalI GATC 5 cut(s) 297, 1758, 1823, 1977, 2100
MboI GATC 5 cut(s) 295, 1756, 1821, 1975, 2098
MhlI GDGCHC 1 cut(s) 1877
MlsI TGGCCA 2 cut(s) 1663, 1728
MluNI TGGCCA 2 cut(s) 1663, 1728
MlyI GAGTC 2 cut(s) 1500, 1946
MmeI TCCRAC 9 cut(s) 406, 728, 800, 872, 944, 1016, 1160, 1206, 1474
Mox20I TGGCCA 2 cut(s) 1663, 1728
MroXI GAANNNNTTC 9 cut(s) 352, 649, 721, 865, 937, 1009, 1081, 1247, 1772
MscI TGGCCA 2 cut(s) 1663, 1728
MseI TTAA 9 cut(s) 68, 608, 668, 824, 896, 1238, 1478, 1574, 1907
MslI CAYNNNNRTG 1 cut(s) 1894
Msp20I TGGCCA 2 cut(s) 1663, 1728
MspA1I CMGCKG 1 cut(s) 23
MspI CCGG 9 cut(s) 477, 549, 621, 693, 765, 837, 909, 981, 1998
MwoI GCNNNNNNNGC 6 cut(s) 243, 267, 1099, 1115, 1689, 1872
NdeII GATC 5 cut(s) 295, 1756, 1821, 1975, 2098
NlaIII CATG 6 cut(s) 260, 1143, 1269, 1373, 1401, 1873
NlaIV GGNNCC 3 cut(s) 1648, 2002, 2059
NspI RCATGY 1 cut(s) 1401
NspV TTCGAA 1 cut(s) 653
PagI TCATGA 1 cut(s) 1369
PciI ACATGT 1 cut(s) 1397
PdmI GAANNNNTTC 9 cut(s) 352, 649, 721, 865, 937, 1009, 1081, 1247, 1772
PfeI GAWTC 4 cut(s) 382, 1316, 1378, 1930
PflFI GACNNNGTC 1 cut(s) 955
PkrI GCNGC 6 cut(s) 22, 25, 151, 248, 392, 1101
PleI GAGTC 2 cut(s) 1499, 1945
PpsI GAGTC 2 cut(s) 1499, 1945
PscI ACATGT 1 cut(s) 1397
Psp1406I AACGTT 1 cut(s) 1617
PspN4I GGNNCC 3 cut(s) 1648, 2002, 2059
PstNI CAGNNNCTG 1 cut(s) 1099
PsyI GACNNNGTC 1 cut(s) 955
PvuII CAGCTG 1 cut(s) 23
RsaI GTAC 5 cut(s) 328, 449, 521, 593, 2156
RsaNI GTAC 5 cut(s) 327, 448, 520, 592, 2155
RseI CAYNNNNRTG 1 cut(s) 1894
SaqAI TTAA 9 cut(s) 68, 608, 668, 824, 896, 1238, 1478, 1574, 1907
SatI GCNGC 6 cut(s) 21, 24, 150, 247, 391, 1100
Sau3AI GATC 5 cut(s) 295, 1756, 1821, 1975, 2098
ScaI AGTACT 1 cut(s) 593
SchI GAGTC 2 cut(s) 1500, 1946
SduI GDGCHC 1 cut(s) 1877
SfaNI GCATC 2 cut(s) 301, 1349
SfuI TTCGAA 1 cut(s) 653
SmiMI CAYNNNNRTG 1 cut(s) 1894
SmlI CTYRAG 4 cut(s) 215, 1484, 1762, 1934
SmoI CTYRAG 4 cut(s) 215, 1484, 1762, 1934
SspI AATATT 3 cut(s) 108, 1786, 2080
SspMI CTAG 5 cut(s) 47, 1305, 1791, 1811, 2054
StyI CCWWGG 2 cut(s) 1026, 1790
TaaI ACNGT 5 cut(s) 127, 1167, 1259, 1637, 2154
TaiI ACGT 3 cut(s) 1162, 1365, 1620
TaqI TCGA 9 cut(s) 129, 294, 498, 653, 710, 782, 854, 926, 998
TatI WGTACW 2 cut(s) 591, 2154
TfiI GAWTC 4 cut(s) 382, 1316, 1378, 1930
Tru1I TTAA 9 cut(s) 68, 608, 668, 824, 896, 1238, 1478, 1574, 1907
Tru9I TTAA 9 cut(s) 68, 608, 668, 824, 896, 1238, 1478, 1574, 1907
TseI GCWGC 6 cut(s) 20, 23, 149, 246, 390, 1099
TspDTI ATGAA 4 cut(s) 212, 1211, 1254, 2021
Tth111I GACNNNGTC 1 cut(s) 955
XapI RAATTY 8 cut(s) 185, 655, 727, 1015, 1087, 1463, 1497, 2141
XceI RCATGY 1 cut(s) 1401
XcmI CCANNNNNNNNNTGG 3 cut(s) 1137, 1164, 1893
XmaJI CCTAGG 1 cut(s) 1790
XmnI GAANNNNTTC 9 cut(s) 352, 649, 721, 865, 937, 1009, 1081, 1247, 1772
XspI CTAG 5 cut(s) 47, 1305, 1791, 1811, 2054
ZrmI AGTACT 1 cut(s) 593
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.