Prupe.5G128000_v2.0.a1

Belongs to the yippee family

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
Physical Location & Seq
Reverse (-)
12469576 .. 12471496
1921 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G128000.7

Sequence Viewer

Length: 321 bp
ATGGCGGAATTTGTTGGGCCGAGGTTGTATAGTTGCTGTAATTGCAGAAACCATGTTGCCCTTCATGATGATGTCATTTCTAAAGCCTTTCAGGGTAGAAATGGTCGAGCCTTTCTGTTTTCACACGCAATGAACATTACAGTTGGGCCGAAAGAAAACAGACAACTCATGACTGGTCTGCACACTGTTGCTGATGTCTCCTGCTGTGACTGTCGTGAGGTGCTTGGTTGGAAGTACGAACGAGCCTATGAGGAAACGCAGAAGTACAAGGAAGGGAAATTCATACTTGAGAAATCAAAAATCGTCAAGGAAAACTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

107

Amino Acids

12.25

Weight (kDa)

8.56

Isoelectric Point (pI)

21.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 5
AcsI RAATTY 2 cut(s) 8, 278
AfaI GTAC 2 cut(s) 236, 266
Alw26I GTCTC 1 cut(s) 202
AoxI GGCC 2 cut(s) 17, 146
ApoI RAATTY 2 cut(s) 8, 278
AspS9I GGNCC 2 cut(s) 17, 146
BcoDI GTCTC 1 cut(s) 202
BmgT120I GGNCC 2 cut(s) 17, 146
BpuEI CTTGAG 1 cut(s) 308
BsaJI CCNNGG 1 cut(s) 20
Bse1I ACTGG 2 cut(s) 178, 320
Bse3DI GCAATG 1 cut(s) 135
BseDI CCNNGG 1 cut(s) 20
BseMI GCAATG 1 cut(s) 135
BseNI ACTGG 2 cut(s) 178, 320
BsgI GTGCAG 1 cut(s) 164
BshFI GGCC 2 cut(s) 19, 148
BsmAI GTCTC 1 cut(s) 202
BsnI GGCC 2 cut(s) 19, 148
BspACI CCGC 1 cut(s) 5
BspANI GGCC 2 cut(s) 19, 148
BspHI TCATGA 2 cut(s) 64, 168
BsrDI GCAATG 1 cut(s) 135
BsrI ACTGG 2 cut(s) 178, 320
BssECI CCNNGG 1 cut(s) 20
Bst4CI ACNGT 3 cut(s) 142, 187, 212
BstMAI GTCTC 1 cut(s) 202
BstMWI GCNNNNNNNGC 1 cut(s) 42
BsuRI GGCC 2 cut(s) 19, 148
BtsIMutI CAGTG 1 cut(s) 183
CciI TCATGA 2 cut(s) 64, 168
Cfr13I GGNCC 2 cut(s) 17, 146
Csp6I GTAC 2 cut(s) 235, 265
CviAII CATG 3 cut(s) 53, 65, 169
CviJI RGCY 5 cut(s) 19, 86, 110, 148, 245
CviKI_1 RGCY 5 cut(s) 19, 86, 110, 148, 245
CviQI GTAC 2 cut(s) 235, 265
EciI GGCGGA 1 cut(s) 20
FaeI CATG 3 cut(s) 56, 68, 172
FaiI YATR 6 cut(s) 30, 54, 66, 170, 249, 284
FatI CATG 3 cut(s) 52, 64, 168
HaeIII GGCC 2 cut(s) 19, 148
Hin1II CATG 3 cut(s) 56, 68, 172
Hpy188III TCNNGA 3 cut(s) 65, 169, 215
HpyAV CCTTC 2 cut(s) 71, 266
HpyCH4III ACNGT 3 cut(s) 142, 187, 212
HpyCH4V TGCA 2 cut(s) 45, 181
HpyF10VI GCNNNNNNNGC 1 cut(s) 42
Hsp92II CATG 3 cut(s) 56, 68, 172
LpnPI CCDG 4 cut(s) 77, 159, 214, 301
MaeIII GTNAC 1 cut(s) 206
MluCI AATT 3 cut(s) 8, 40, 278
MmeI TCCRAC 1 cut(s) 209
MnlI CCTC 3 cut(s) 15, 211, 244
MslI CAYNNNNRTG 1 cut(s) 69
MwoI GCNNNNNNNGC 1 cut(s) 42
NlaIII CATG 3 cut(s) 56, 68, 172
NmeAIII GCCGAG 1 cut(s) 45
NmuCI GTSAC 1 cut(s) 206
PagI TCATGA 2 cut(s) 64, 168
PspPI GGNCC 2 cut(s) 17, 146
RsaI GTAC 2 cut(s) 236, 266
RsaNI GTAC 2 cut(s) 235, 265
RseI CAYNNNNRTG 1 cut(s) 69
Sau96I GGNCC 2 cut(s) 17, 146
SetI ASST 2 cut(s) 26, 222
SmiMI CAYNNNNRTG 1 cut(s) 69
SmlI CTYRAG 1 cut(s) 287
SmoI CTYRAG 1 cut(s) 287
Sse9I AATT 3 cut(s) 8, 40, 278
SsiI CCGC 1 cut(s) 5
TaaI ACNGT 3 cut(s) 142, 187, 212
TaqI TCGA 1 cut(s) 106
TasI AATT 3 cut(s) 8, 40, 278
TatI WGTACW 1 cut(s) 264
TscAI CASTG 1 cut(s) 190
TseFI GTSAC 1 cut(s) 206
Tsp45I GTSAC 1 cut(s) 206
TspDTI ATGAA 3 cut(s) 53, 146, 271
TspRI CASTG 1 cut(s) 190
XapI RAATTY 2 cut(s) 8, 278
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.