FvH4_7g28480

alpha-L-fucosidase 1-like

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
Physical Location & Seq
Reverse (-)
21116589 .. 21119495
2907 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g28480.t1

Sequence Viewer

Length: 1467 bp
ATGGCTAAACAATGGCGCTCTTTGTGCATATTCACATTCCTCCAACTTTCCACCTTCACCATCTCAAGGCTTGAGCAAGTCCCAACACCACCATTACCAATTCTACCTCTTCCCACATATTCCCAGCTCAAATGGCAACAAAGAGAGCTCATAATGTTCCTCCATTTCGGAGTAAACACCTTCACTGACTCCGAATGGGGAACCGGCCATGAAAGCCCTGCCATCTTCAACCCGGCCGGGCTTGACGCCAACCAGTGGGTCAAAACAGCTTCTGATGCAGGCATATCACTAGTGGTACTCACTGCGAAGCACCATGATGGGTTTTGCTTGTGGCCTTCAAAGTACACTGAACACTCCGTGGGGAGTAGTCCTTGGAGAAGTGGCCATGGTGATGTTGTTCAAGAGCTTGTCAATGCCGCCACGACGCATGGCGGCATTGACATCGGGCTTTATCTGTCGCCATGGGACAGACATGACCGGAGATACGGTCATGAGGTAGCATACAATCAGTACTACTTGGCTCAGTTACAAGAACTTCTCAGCAGGTATGGGAGTGTAAGGGAAATTTGGTTTGATGGGAGCAAGGGTCCAAATGCACCAAACATGTCCTATTACTTTGCAGATTGGTTCTCCATGGTGAAGGAGTTACAGAGCACCATTAACATATTTTCGGATGCTGGTCCGGATGTTAGATGGGTCGGAAATGAGCAAGGCTTCGCCGGAAGCACAAGCTGGTCCACCATTAATCGGAGCTCATTATCAATTGGGAATGCAAGCATTGAAGGTTATCTCAACACTGGTGATCCACAAGGGATGGATTGGTTGCCTCCAGAATGCGACGTATCGATAAGAAATGGATGGTTTTGGCACAAATCAGAGTCACCTAAGAAGCTAAGTACATTGCTTGAAATTTACTACAACTCAGTAGGAAGAAACTGTGTACTGCTACTCAATGTGCCTCCTAATTCGACCGGACTTATATCCCAAGCAGATGTGCAAAGACTAAGAGAATTGAGGGGTGCAATTGACACTATATTTTCTAGCAATTTAGCAGAAAACTGCTCCATCAAAGTGAGTAGCCAAAGAGGAGGCAAAGGAGGAGGTTTTGGACCTGAAAATGTGCTAGACAGTGACCATTTGTGGACATATTGGGCTCCAAAGGATGGTGACAAAGAGGAGCATTGGATTGAATTTAGAGGCAGAGATGAAACTAAAGGATTGAGGTTCAATGTGATCAGGATTCAAGAGGCAATAGGGCTTGGTCAGAGAATCAAAAAGCATGAAATTTATGTGGATGGTAAGATGGTTGCAAATGGAACCACAGTGGGGTACAAGAGGCTTCACAGACTTGAAGGGGGAGTACTCCATGGCCAAATTGTCAGAATTAAGCTTGAAGACTCAAAAGGGCTGCCTTTGATTTCTTCAATTGGTCTGCATTTTGATCCATATTGGCACCCAAGTGTTTAG

Protein Analysis

489

Amino Acids

54.87

Weight (kDa)

6.38

Isoelectric Point (pI)

43.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Alpha_L_fucos PF01120 72 - 338 9e-33 Alpha-L-fucosidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 534
AccB1I GGYRCC 1 cut(s) 1452
AccB7I CCANNNNNTGG 2 cut(s) 255, 1163
AccIII TCCGGA 1 cut(s) 682
AciI CCGC 2 cut(s) 417, 432
AclWI GGATC 2 cut(s) 797, 1436
AcoI YGGCCR 4 cut(s) 205, 234, 382, 1369
AcsI RAATTY 4 cut(s) 564, 909, 1190, 1284
AcyI GRCGYC 1 cut(s) 246
AdeI CACNNNGTG 1 cut(s) 358
AfaI GTAC 7 cut(s) 297, 344, 512, 898, 942, 1331, 1362
AfiI CCNNNNNNNGG 5 cut(s) 66, 255, 747, 1163, 1326
AflIII ACRYGT 1 cut(s) 603
AhlI ACTAGT 1 cut(s) 289
AleI CACNNNNGTG 1 cut(s) 1458
AluBI AGCT 8 cut(s) 127, 148, 269, 406, 732, 753, 892, 1390
AluI AGCT 8 cut(s) 127, 148, 269, 406, 732, 753, 892, 1390
Alw21I GWGCWC 3 cut(s) 150, 656, 755
AlwI GGATC 2 cut(s) 797, 1436
AlwNI CAGNNNCTG 1 cut(s) 272
Aor13HI TCCGGA 1 cut(s) 682
AoxI GGCC 5 cut(s) 205, 234, 332, 382, 1369
ApeKI GCWGC 1 cut(s) 1408
ApoI RAATTY 4 cut(s) 564, 909, 1190, 1284
AseI ATTAAT 1 cut(s) 744
AspLEI GCGC 1 cut(s) 18
AspS9I GGNCC 4 cut(s) 587, 680, 735, 1109
AsuC2I CCSGG 2 cut(s) 233, 238
AsuHPI GGTGA 6 cut(s) 49, 401, 649, 812, 873, 1178
AvaII GGWCC 4 cut(s) 587, 680, 735, 1109
BalI TGGCCA 2 cut(s) 384, 1371
BanI GGYRCC 1 cut(s) 1452
BanII GRGCYC 3 cut(s) 150, 755, 1156
BarI GAAGNNNNNNTAC 2 cut(s) 1344, 1376
BbsI GAAGAC 1 cut(s) 1401
Bbv12I GWGCWC 3 cut(s) 150, 656, 755
BbvI GCAGC 1 cut(s) 1395
BcgI CGANNNNNNTGC 2 cut(s) 424, 458
BclI TGATCA 1 cut(s) 1233
BcnI CCSGG 2 cut(s) 233, 238
BcuI ACTAGT 1 cut(s) 289
BfaI CTAG 3 cut(s) 290, 1041, 1124
BfoI RGCGCY 1 cut(s) 19
BfuAI ACCTGC 1 cut(s) 534
BisI GCNGC 3 cut(s) 417, 433, 1409
BlsI GCNGC 3 cut(s) 418, 434, 1410
BmcAI AGTACT 2 cut(s) 512, 1362
Bme1390I CCNGG 2 cut(s) 233, 238
Bme18I GGWCC 4 cut(s) 587, 680, 735, 1109
BmgT120I GGNCC 4 cut(s) 587, 680, 735, 1109
BmiI GGNNCC 5 cut(s) 202, 588, 1155, 1318, 1454
BmrFI CCNGG 2 cut(s) 233, 238
BmsI GCATC 2 cut(s) 265, 664
BpiI GAAGAC 1 cut(s) 1401
BpmI CTGGAG 1 cut(s) 813
BpuEI CTTGAG 2 cut(s) 49, 92
BpuMI CCSGG 2 cut(s) 233, 238
Bsa29I ATCGAT 1 cut(s) 845
BsaHI GRCGYC 1 cut(s) 246
BsaJI CCNNGG 6 cut(s) 357, 371, 385, 461, 633, 1366
BsaWI WCCGGW 3 cut(s) 477, 682, 971
BsaXI ACNNNNNCTCC 4 cut(s) 472, 502, 571, 601
Bsc4I CCNNNNNNNGG 5 cut(s) 66, 255, 747, 1163, 1326
Bse118I RCCGGY 1 cut(s) 203
Bse1I ACTGG 2 cut(s) 253, 802
Bse3DI GCAATG 1 cut(s) 899
BseAI TCCGGA 1 cut(s) 682
BseCI ATCGAT 1 cut(s) 845
BseDI CCNNGG 6 cut(s) 357, 371, 385, 461, 633, 1366
BseGI GGATG 6 cut(s) 679, 691, 819, 863, 1168, 1300
BseLI CCNNNNNNNGG 5 cut(s) 66, 255, 747, 1163, 1326
BseMI GCAATG 1 cut(s) 899
BseMII CTCAG 3 cut(s) 536, 553, 936
BseNI ACTGG 2 cut(s) 253, 802
BseRI GAGGAG 3 cut(s) 1101, 1113, 1190
BseX3I CGGCCG 1 cut(s) 234
BseXI GCAGC 1 cut(s) 1395
BseYI CCCAGC 1 cut(s) 123
Bsh1285I CGRYCG 2 cut(s) 237, 972
BshFI GGCC 5 cut(s) 207, 236, 334, 384, 1371
BshNI GGYRCC 1 cut(s) 1452
BshVI ATCGAT 1 cut(s) 845
BsiEI CGRYCG 2 cut(s) 237, 972
BsiHKAI GWGCWC 3 cut(s) 150, 656, 755
BsiSI CCGG 7 cut(s) 204, 233, 237, 478, 683, 720, 972
BslFI GGGAC 2 cut(s) 65, 479
BslI CCNNNNNNNGG 5 cut(s) 66, 255, 747, 1163, 1326
BsmFI GGGAC 2 cut(s) 65, 479
BsmI GAATGC 2 cut(s) 775, 839
BsnI GGCC 5 cut(s) 207, 236, 334, 384, 1371
Bsp1286I GDGCHC 4 cut(s) 150, 656, 755, 1156
Bsp13I TCCGGA 1 cut(s) 682
Bsp143I GATC 3 cut(s) 802, 1233, 1441
Bsp19I CCATGG 4 cut(s) 385, 461, 633, 1366
BspACI CCGC 2 cut(s) 417, 432
BspANI GGCC 5 cut(s) 207, 236, 334, 384, 1371
BspCNI CTCAG 3 cut(s) 535, 552, 935
BspDI ATCGAT 1 cut(s) 845
BspEI TCCGGA 1 cut(s) 682
BspHI TCATGA 1 cut(s) 490
BspLI GGNNCC 5 cut(s) 202, 588, 1155, 1318, 1454
BspMI ACCTGC 1 cut(s) 534
BspPI GGATC 2 cut(s) 797, 1436
BspT107I GGYRCC 1 cut(s) 1452
BsrDI GCAATG 1 cut(s) 899
BsrFI RCCGGY 1 cut(s) 203
BsrI ACTGG 2 cut(s) 253, 802
BssAI RCCGGY 1 cut(s) 203
BssECI CCNNGG 6 cut(s) 357, 371, 385, 461, 633, 1366
BssMI GATC 3 cut(s) 802, 1233, 1441
BssNI GRCGYC 1 cut(s) 246
BssT1I CCWWGG 5 cut(s) 371, 385, 461, 633, 1366
Bst4CI ACNGT 4 cut(s) 488, 938, 1130, 1324
Bst6I CTCTTC 1 cut(s) 114
BstACI GRCGYC 1 cut(s) 246
BstC8I GCNNGC 2 cut(s) 280, 775
BstDEI CTNAG 6 cut(s) 522, 539, 885, 893, 922, 1004
BstDSI CCRYGG 5 cut(s) 357, 385, 461, 633, 1366
BstF5I GGATG 6 cut(s) 679, 691, 819, 863, 1168, 1300
BstH2I RGCGCY 1 cut(s) 19
BstHHI GCGC 1 cut(s) 18
BstKTI GATC 3 cut(s) 805, 1236, 1444
BstMBI GATC 3 cut(s) 802, 1233, 1441
BstMCI CGRYCG 2 cut(s) 237, 972
BstMWI GCNNNNNNNGC 4 cut(s) 24, 133, 213, 275
BstNSI RCATGY 1 cut(s) 607
BstSCI CCNGG 2 cut(s) 231, 236
BstV1I GCAGC 1 cut(s) 1395
BstV2I GAAGAC 1 cut(s) 1401
BstZI CGGCCG 1 cut(s) 234
Bsu15I ATCGAT 1 cut(s) 845
BsuRI GGCC 5 cut(s) 207, 236, 334, 384, 1371
BsuTUI ATCGAT 1 cut(s) 845
BtgI CCRYGG 5 cut(s) 357, 385, 461, 633, 1366
BtsCI GGATG 6 cut(s) 679, 691, 819, 863, 1168, 1300
BtsI GCAGTG 1 cut(s) 300
BtsIMutI CAGTG 7 cut(s) 183, 260, 300, 345, 795, 1135, 1329
BveI ACCTGC 1 cut(s) 534
Cac8I GCNNGC 2 cut(s) 280, 775
CaiI CAGNNNCTG 1 cut(s) 272
CciI TCATGA 1 cut(s) 490
CfoI GCGC 1 cut(s) 18
Cfr10I RCCGGY 1 cut(s) 203
Cfr13I GGNCC 4 cut(s) 587, 680, 735, 1109
ClaI ATCGAT 1 cut(s) 845
CseI GACGC 2 cut(s) 254, 433
Csp6I GTAC 7 cut(s) 296, 343, 511, 897, 941, 1330, 1361
CviQI GTAC 7 cut(s) 296, 343, 511, 897, 941, 1330, 1361
DdeI CTNAG 6 cut(s) 522, 539, 885, 893, 922, 1004
DpnI GATC 3 cut(s) 804, 1235, 1443
DpnII GATC 3 cut(s) 802, 1233, 1441
DraIII CACNNNGTG 1 cut(s) 358
EaeI YGGCCR 4 cut(s) 205, 234, 382, 1369
EagI CGGCCG 1 cut(s) 234
Eam1104I CTCTTC 1 cut(s) 114
EarI CTCTTC 1 cut(s) 114
Ecl136II GAGCTC 2 cut(s) 148, 753
EclXI CGGCCG 1 cut(s) 234
Eco130I CCWWGG 5 cut(s) 371, 385, 461, 633, 1366
Eco24I GRGCYC 3 cut(s) 150, 755, 1156
Eco47I GGWCC 4 cut(s) 587, 680, 735, 1109
Eco52I CGGCCG 1 cut(s) 234
Eco53kI GAGCTC 2 cut(s) 148, 753
EcoICRI GAGCTC 2 cut(s) 148, 753
EcoT14I CCWWGG 5 cut(s) 371, 385, 461, 633, 1366
EcoT38I GRGCYC 3 cut(s) 150, 755, 1156
ErhI CCWWGG 5 cut(s) 371, 385, 461, 633, 1366
FaqI GGGAC 2 cut(s) 65, 479
FbaI TGATCA 1 cut(s) 1233
Fnu4HI GCNGC 3 cut(s) 417, 433, 1409
FokI GGATG 6 cut(s) 686, 698, 826, 870, 1175, 1307
FriOI GRGCYC 3 cut(s) 150, 755, 1156
Fsp4HI GCNGC 3 cut(s) 417, 433, 1409
FspBI CTAG 3 cut(s) 290, 1041, 1124
GlaI GCGC 1 cut(s) 17
GluI GCNGC 3 cut(s) 417, 433, 1409
GsaI CCCAGC 1 cut(s) 127
GsuI CTGGAG 1 cut(s) 813
HaeII RGCGCY 1 cut(s) 19
HaeIII GGCC 5 cut(s) 207, 236, 334, 384, 1371
HapII CCGG 7 cut(s) 204, 233, 237, 478, 683, 720, 972
HgaI GACGC 2 cut(s) 254, 433
HhaI GCGC 1 cut(s) 18
Hin1I GRCGYC 1 cut(s) 246
Hin6I GCGC 1 cut(s) 16
HinP1I GCGC 1 cut(s) 16
HindIII AAGCTT 1 cut(s) 1388
HinfI GANTC 5 cut(s) 188, 878, 1240, 1269, 1397
HpaII CCGG 7 cut(s) 204, 233, 237, 478, 683, 720, 972
HphI GGTGA 6 cut(s) 49, 401, 649, 812, 873, 1178
Hpy166II GTNNAC 5 cut(s) 175, 345, 738, 941, 1143
Hpy188I TCNGA 9 cut(s) 170, 193, 274, 673, 701, 750, 877, 1266, 1382
Hpy188III TCNNGA 6 cut(s) 401, 491, 683, 830, 1237, 1244
Hpy8I GTNNAC 5 cut(s) 175, 345, 738, 941, 1143
Hpy99I CGWCG 2 cut(s) 427, 842
HpyAV CCTTC 6 cut(s) 64, 190, 345, 634, 776, 1346
HpyCH4III ACNGT 4 cut(s) 488, 938, 1130, 1324
HpyCH4IV ACGT 1 cut(s) 840
HpyCH4V TGCA 9 cut(s) 27, 278, 596, 620, 773, 997, 1022, 1310, 1435
HpyF10VI GCNNNNNNNGC 4 cut(s) 24, 133, 213, 275
HpyF3I CTNAG 6 cut(s) 522, 539, 885, 893, 922, 1004
HpySE526I ACGT 1 cut(s) 840
Hsp92I GRCGYC 1 cut(s) 246
HspAI GCGC 1 cut(s) 16
Kpn2I TCCGGA 1 cut(s) 682
Ksp22I TGATCA 1 cut(s) 1233
Kzo9I GATC 3 cut(s) 802, 1233, 1441
LmnI GCTCC 5 cut(s) 579, 750, 1067, 1159, 1177
Lsp1109I GCAGC 1 cut(s) 1395
LweI GCATC 2 cut(s) 265, 664
MaeI CTAG 3 cut(s) 290, 1041, 1124
MaeII ACGT 1 cut(s) 840
MaeIII GTNAC 5 cut(s) 525, 645, 879, 1130, 1166
MalI GATC 3 cut(s) 804, 1235, 1443
MboI GATC 3 cut(s) 802, 1233, 1441
MboII GAAGA 5 cut(s) 101, 217, 942, 1406, 1413
MfeI CAATTG 3 cut(s) 762, 1023, 1425
MhlI GDGCHC 4 cut(s) 150, 656, 755, 1156
MlsI TGGCCA 2 cut(s) 384, 1371
MluNI TGGCCA 2 cut(s) 384, 1371
MlyI GAGTC 3 cut(s) 182, 887, 1391
MmeI TCCRAC 2 cut(s) 67, 679
Mox20I TGGCCA 2 cut(s) 384, 1371
MroI TCCGGA 1 cut(s) 682
MscI TGGCCA 2 cut(s) 384, 1371
MseI TTAA 3 cut(s) 660, 744, 1386
MslI CAYNNNNRTG 4 cut(s) 315, 390, 1070, 1458
Msp20I TGGCCA 2 cut(s) 384, 1371
MspI CCGG 7 cut(s) 204, 233, 237, 478, 683, 720, 972
MspR9I CCNGG 2 cut(s) 233, 238
MunI CAATTG 3 cut(s) 762, 1023, 1425
Mva1269I GAATGC 2 cut(s) 775, 839
MwoI GCNNNNNNNGC 4 cut(s) 24, 133, 213, 275
NciI CCSGG 2 cut(s) 233, 238
NcoI CCATGG 4 cut(s) 385, 461, 633, 1366
NdeII GATC 3 cut(s) 802, 1233, 1441
NlaIV GGNNCC 5 cut(s) 202, 588, 1155, 1318, 1454
NmuCI GTSAC 3 cut(s) 879, 1130, 1166
NspI RCATGY 1 cut(s) 607
OliI CACNNNNGTG 1 cut(s) 1458
PagI TCATGA 1 cut(s) 490
PciI ACATGT 1 cut(s) 603
PctI GAATGC 2 cut(s) 775, 839
PfeI GAWTC 2 cut(s) 1240, 1269
PflMI CCANNNNNTGG 2 cut(s) 255, 1163
PkrI GCNGC 3 cut(s) 418, 434, 1410
PleI GAGTC 3 cut(s) 182, 886, 1391
PpsI GAGTC 3 cut(s) 182, 886, 1391
PscI ACATGT 1 cut(s) 603
PshBI ATTAAT 1 cut(s) 744
Psp124BI GAGCTC 2 cut(s) 150, 755
PspFI CCCAGC 1 cut(s) 123
PspN4I GGNNCC 5 cut(s) 202, 588, 1155, 1318, 1454
PspPI GGNCC 4 cut(s) 587, 680, 735, 1109
PstNI CAGNNNCTG 1 cut(s) 272
RsaI GTAC 7 cut(s) 297, 344, 512, 898, 942, 1331, 1362
RsaNI GTAC 7 cut(s) 296, 343, 511, 897, 941, 1330, 1361
RseI CAYNNNNRTG 4 cut(s) 315, 390, 1070, 1458
SacI GAGCTC 2 cut(s) 150, 755
SaqAI TTAA 3 cut(s) 660, 744, 1386
SatI GCNGC 3 cut(s) 417, 433, 1409
Sau3AI GATC 3 cut(s) 802, 1233, 1441
Sau96I GGNCC 4 cut(s) 587, 680, 735, 1109
ScaI AGTACT 2 cut(s) 512, 1362
SchI GAGTC 3 cut(s) 182, 887, 1391
ScrFI CCNGG 2 cut(s) 233, 238
SduI GDGCHC 4 cut(s) 150, 656, 755, 1156
SfaNI GCATC 2 cut(s) 265, 664
SinI GGWCC 4 cut(s) 587, 680, 735, 1109
SmiMI CAYNNNNRTG 4 cut(s) 315, 390, 1070, 1458
SmlI CTYRAG 2 cut(s) 64, 71
SmoI CTYRAG 2 cut(s) 64, 71
SpeI ACTAGT 1 cut(s) 289
SsiI CCGC 2 cut(s) 417, 432
SspMI CTAG 3 cut(s) 290, 1041, 1124
SstI GAGCTC 2 cut(s) 150, 755
StyD4I CCNGG 2 cut(s) 231, 236
StyI CCWWGG 5 cut(s) 371, 385, 461, 633, 1366
TaaI ACNGT 4 cut(s) 488, 938, 1130, 1324
TaiI ACGT 1 cut(s) 843
TaqI TCGA 2 cut(s) 845, 968
TatI WGTACW 5 cut(s) 342, 510, 896, 940, 1360
TauI GCSGC 2 cut(s) 419, 435
TfiI GAWTC 2 cut(s) 1240, 1269
Tru1I TTAA 3 cut(s) 660, 744, 1386
Tru9I TTAA 3 cut(s) 660, 744, 1386
TscAI CASTG 7 cut(s) 190, 260, 307, 352, 802, 1135, 1329
TseFI GTSAC 3 cut(s) 879, 1130, 1166
TseI GCWGC 1 cut(s) 1408
Tsp45I GTSAC 3 cut(s) 879, 1130, 1166
TspDTI ATGAA 3 cut(s) 225, 1221, 1296
TspGWI ACGGA 1 cut(s) 346
TspRI CASTG 7 cut(s) 190, 260, 307, 352, 802, 1135, 1329
Van91I CCANNNNNTGG 2 cut(s) 255, 1163
VpaK11BI GGWCC 4 cut(s) 587, 680, 735, 1109
VspI ATTAAT 1 cut(s) 744
XapI RAATTY 4 cut(s) 564, 909, 1190, 1284
XceI RCATGY 1 cut(s) 607
XspI CTAG 3 cut(s) 290, 1041, 1124
ZrmI AGTACT 2 cut(s) 512, 1362
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.