Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0003070

Physical Location & Seq

Genomic Coordinates Reverse (-)

28216057 .. 28218247

Gene Structure 2191 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G285300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1497 bp

ATGCCTAAACTATGGTGCTTTTTGTCCACAGTCACACTCTTTCAACTATGCACTTTCACCTTCTCCAGGCTTGAGCTGGTGCCAACACCACCATTGCCAATTCTGCCCCTTCCCTCATATGCCCAGCTGAAATGGCAACAAAGGGAGCTCATCATGTTCCTCCATTTTGGAGTGAACACATTCACTGACTCTGAGTGGGGCACAGGCCATGAAAACCCAGCAATCTTCAATCCAGTTGGGCTCAATGCAAACCAATGGCTGAGCACAGCAGCAGATGCAGGCATATCATTAGTCATACTTACTGCAAAACACCATGATGGGTTTTGCTTGTGGCCTTCTAAGTACACTGACCACTCTGTGGAAAAAAGTCCATGGAAAAATGGTCATGGGGATGTTGTGCAGGAGCTTGTCAATGCAGCCAAGCCCCTTGGGGTTGATGTTGGGCTCTATCTCTCACCTTGGGACAGGCATGATCAGAGATATGGGCATGAGATTGCATACAACCAATACTACTTAGCTCAATTGCAAGAGCTACTCAACAGATATGGGAGTGTGAGAGAAATTTGGTTTGATGGAAGTAAGGGTAAGAATGCACCAAACATGTCCTATTATTTTACAGATTGGTTCTCCATGGTGAAGGAGTTGCAGAGCTCCATTAACATATTTTCTGATGCGGGTCCGGATGTCAGATGGGTTGGAAATGAGAAAGGCTTTGCTGGGAGTACATGTTGGTCCACCATTAACCGGACCTCTCTATCAATCGGAAATGCAAGCATTGAAGATTATCTCAACAATGGCGATCCAAAAGGGACAGATTGGTTGCCAGCAGAGTGCGACGTTTCGATCCGACAAGGATGGTTTTGGCATAAATCACAAACACCTAAGAGTCTAAGTCGGCTACTTGAAATTTACTACAACTCAGTGGGACGAAATTGTGTGCTGCTACTCAATGTGCCTCCCAACTCAACCGGGCTTATATCAGAAGTAGATGTTCAAAGACTGAGAGAATTTAGAAGGGCAATTGATACAATATTTTCTACCAATTTAGCAGAGAAGTGTTCTGTCAAAGTTAGTAGCCAAAGAGGAGGCAAAGGAGGAGGCTTTGGACCTGAAAATGTGCTAGACAGTGACCATTTGTGGACATACTGGGCTCCAAGGGATGATGACAAAGAGGGCCATTGGATTGAAATCAGAGGTACAGGCACAGATGGAGGGCTGAGATTCAATGTGATTAGGATTCAAGAGGCAATTGGGCTTGGTCAGAGGATCAAAAGGCATGACATTTATGTGGATGGTAAAAGAGTAGCAAATGGAACCACAGTGGGGTACAAGAGGCTTCACAGACTTGAAGAGGGAGTGATCCATGGAAAAATTGTAAAAATTAGAATTGAAGAATCAAAGGGATTGCCTTTAATTTCTTCCATTGGTCTGCATTTTGATCCCTTTTGGCACCCAAATCCAAATGGGGAGCGACCTCAAGAAAAAGGGATGAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004560 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006516 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009100 GO:0009987 GO:0015928 GO:0016787 GO:0016798 GO:0019538 GO:0030163 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:1901135 GO:1901136 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00511 map00511

Pfam Domains

Protein Families

Alpha_L_fucos F5_F8_type_C

Protein Analysis

499

Amino Acids

56.35

Weight (kDa)

6.97

Isoelectric Point (pI)

39.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003070)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g28480 FvH4_7g28490
malus_domestica	MD01G1188500.v1.1 MD01G1188600.v1.1
prunus_persica	Prupe.2G285300_v2.0.a1
pyrus_communis	pycom01g20020 pycom01g20030
rosa_chinensis	RchiOBHm_Chr1g0375771 RchiOBHm_Chr1g0375821 RchiOBHm_Chr1g0375841 RchiOBHm_Chr1g0375871
rosa_laevigata	RLG00000026648 RLG00000026649 RLG00000026652 RLG00000026654
rosa_multiflora	Rmu_sc0000487.1_g000052 Rmu_sc0001943.1_g000004 Rmu_sc0001943.1_g000006 Rmu_sc0001943.1_g000007
rosa_roxburghii	Rroxscaffold_4G00282570 Rroxscaffold_4G00282610 Rroxscaffold_4G00282640
rosa_rugosa	Rorug01G0391800 Rorug01G0391900 Rorug01G0392000
rosa_samantha	Rh1AG403600 Rh1AG403700 Rh1AG403800 Rh1BG367200 Rh1BG367300 Rh1CG379800 Rh1CG380000 Rh1CG380100 Rh1DG397200 Rh1DG397300
rosa_wichuraiana	Rw0G000980 Rw0G023580 Rw4G005900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	79, 1449
AccB7I	CCANNNNNTGG	1 cut(s)	358
AccIII	TCCGGA	1 cut(s)	679
AciI	CCGC	1 cut(s)	674
AclWI	GGATC	5 cut(s)	794, 838, 1274, 1354, 1433
AcsI	RAATTY	3 cut(s)	561, 906, 1007
AdeI	CACNNNGTG	1 cut(s)	358
AfaI	GTAC	4 cut(s)	344, 724, 1198, 1328
AfiI	CCNNNNNNNGG	4 cut(s)	66, 358, 744, 1323
AflIII	ACRYGT	2 cut(s)	600, 725
AjnI	CCWGG	1 cut(s)	65
AluBI	AGCT	7 cut(s)	76, 127, 148, 406, 518, 532, 651
AluI	AGCT	7 cut(s)	76, 127, 148, 406, 518, 532, 651
Alw21I	GWGCWC	3 cut(s)	150, 266, 653
AlwI	GGATC	5 cut(s)	794, 838, 1274, 1354, 1433
Aor13HI	TCCGGA	1 cut(s)	679
AoxI	GGCC	3 cut(s)	205, 332, 1174
ApeKI	GCWGC	3 cut(s)	269, 416, 940
ApoI	RAATTY	3 cut(s)	561, 906, 1007
Asp700I	GAANNNNTTC	1 cut(s)	179
AspS9I	GGNCC	5 cut(s)	677, 732, 747, 1106, 1174
AsuC2I	CCSGG	1 cut(s)	970
AsuHPI	GGTGA	3 cut(s)	49, 447, 646
AvaII	GGWCC	4 cut(s)	677, 732, 747, 1106
BaeGI	GKGCMC	1 cut(s)	203
BanI	GGYRCC	2 cut(s)	79, 1449
BanII	GRGCYC	5 cut(s)	150, 243, 447, 653, 1153
Bbv12I	GWGCWC	3 cut(s)	150, 266, 653
BbvI	GCAGC	3 cut(s)	281, 428, 927
BccI	CCATC	6 cut(s)	311, 566, 684, 849, 1202, 1286
BciT130I	CCWGG	1 cut(s)	67
BclI	TGATCA	1 cut(s)	472
BcnI	CCSGG	1 cut(s)	970
BfaI	CTAG	1 cut(s)	1121
BisI	GCNGC	3 cut(s)	270, 417, 941
BlpI	GCTNAGC	1 cut(s)	260
BlsI	GCNGC	3 cut(s)	271, 418, 942
Bme1390I	CCNGG	2 cut(s)	67, 970
Bme18I	GGWCC	4 cut(s)	677, 732, 747, 1106
BmgT120I	GGNCC	5 cut(s)	677, 732, 747, 1106, 1174
BmiI	GGNNCC	5 cut(s)	81, 678, 1152, 1315, 1451
BmrFI	CCNGG	2 cut(s)	67, 970
BmrI	ACTGGG	1 cut(s)	1156
BmsI	GCATC	2 cut(s)	265, 661
BmuI	ACTGGG	1 cut(s)	1156
BpmI	CTGGAG	1 cut(s)	49
Bpu1102I	GCTNAGC	1 cut(s)	260
BpuEI	CTTGAG	2 cut(s)	92, 1461
BpuMI	CCSGG	1 cut(s)	970
BsaBI	GATNNNNATC	1 cut(s)	1187
BsaJI	CCNNGG	6 cut(s)	371, 427, 458, 630, 1154, 1363
BsaWI	WCCGGW	2 cut(s)	679, 744
BsaXI	ACNNNNNCTCC	2 cut(s)	712, 742
Bsc4I	CCNNNNNNNGG	4 cut(s)	66, 358, 744, 1323
Bse1I	ACTGG	2 cut(s)	233, 1151
Bse3DI	GCAATG	1 cut(s)	92
Bse8I	GATNNNNATC	1 cut(s)	1187
BseAI	TCCGGA	1 cut(s)	679
BseBI	CCWGG	1 cut(s)	67
BseDI	CCNNGG	6 cut(s)	371, 427, 458, 630, 1154, 1363
BseGI	GGATG	6 cut(s)	397, 688, 860, 1165, 1297, 1494
BseJI	GATNNNNATC	1 cut(s)	1187
BseLI	CCNNNNNNNGG	4 cut(s)	66, 358, 744, 1323
BseMI	GCAATG	1 cut(s)	92
BseMII	CTCAG	5 cut(s)	183, 251, 933, 992, 1208
BseNI	ACTGG	2 cut(s)	233, 1151
BseRI	GAGGAG	2 cut(s)	1098, 1110
BseSI	GKGCMC	1 cut(s)	203
BseXI	GCAGC	3 cut(s)	281, 428, 927
BseYI	CCCAGC	3 cut(s)	123, 217, 716
BsgI	GTGCAG	1 cut(s)	419
BshFI	GGCC	3 cut(s)	207, 334, 1176
BshNI	GGYRCC	2 cut(s)	79, 1449
BsiHKAI	GWGCWC	3 cut(s)	150, 266, 653
BsiSI	CCGG	3 cut(s)	680, 745, 969
BslFI	GGGAC	3 cut(s)	476, 823, 939
BslI	CCNNNNNNNGG	4 cut(s)	66, 358, 744, 1323
BsmFI	GGGAC	3 cut(s)	476, 823, 939
BsmI	GAATGC	1 cut(s)	595
BsnI	GGCC	3 cut(s)	207, 334, 1176
Bsp1286I	GDGCHC	7 cut(s)	150, 203, 243, 266, 447, 653, 1153
Bsp13I	TCCGGA	1 cut(s)	679
Bsp143I	GATC	6 cut(s)	472, 799, 843, 1266, 1359, 1438
Bsp1720I	GCTNAGC	1 cut(s)	260
Bsp19I	CCATGG	3 cut(s)	371, 630, 1363
BspACI	CCGC	1 cut(s)	674
BspANI	GGCC	3 cut(s)	207, 334, 1176
BspCNI	CTCAG	5 cut(s)	184, 252, 932, 993, 1209
BspEI	TCCGGA	1 cut(s)	679
BspLI	GGNNCC	5 cut(s)	81, 678, 1152, 1315, 1451
BspPI	GGATC	5 cut(s)	794, 838, 1274, 1354, 1433
BspT107I	GGYRCC	2 cut(s)	79, 1449
BsrDI	GCAATG	1 cut(s)	92
BsrI	ACTGG	2 cut(s)	233, 1151
BssECI	CCNNGG	6 cut(s)	371, 427, 458, 630, 1154, 1363
BssMI	GATC	6 cut(s)	472, 799, 843, 1266, 1359, 1438
BssT1I	CCWWGG	6 cut(s)	371, 427, 458, 630, 1154, 1363
Bst2UI	CCWGG	1 cut(s)	67
Bst4CI	ACNGT	3 cut(s)	31, 1127, 1321
Bst6I	CTCTTC	1 cut(s)	1344
BstAPI	GCANNNNNTGC	1 cut(s)	275
BstC8I	GCNNGC	3 cut(s)	280, 772, 825
BstDEI	CTNAG	9 cut(s)	192, 260, 339, 514, 882, 890, 919, 1001, 1217
BstDSI	CCRYGG	3 cut(s)	371, 630, 1363
BstENI	CCTNNNNNAGG	1 cut(s)	64
BstF5I	GGATG	6 cut(s)	397, 688, 860, 1165, 1297, 1494
BstKTI	GATC	6 cut(s)	475, 802, 846, 1269, 1362, 1441
BstMBI	GATC	6 cut(s)	472, 799, 843, 1266, 1359, 1438
BstMWI	GCNNNNNNNGC	3 cut(s)	103, 133, 275
BstNI	CCWGG	1 cut(s)	67
BstNSI	RCATGY	2 cut(s)	604, 729
BstSCI	CCNGG	2 cut(s)	65, 968
BstSLI	GKGCMC	1 cut(s)	203
BstV1I	GCAGC	3 cut(s)	281, 428, 927
BsuRI	GGCC	3 cut(s)	207, 334, 1176
BtgI	CCRYGG	3 cut(s)	371, 630, 1363
BtsCI	GGATG	6 cut(s)	397, 688, 860, 1165, 1297, 1494
BtsIMutI	CAGTG	5 cut(s)	183, 345, 927, 1132, 1326
Cac8I	GCNNGC	3 cut(s)	280, 772, 825
Cfr13I	GGNCC	5 cut(s)	677, 732, 747, 1106, 1174
Csp6I	GTAC	4 cut(s)	343, 723, 1197, 1327
CviQI	GTAC	4 cut(s)	343, 723, 1197, 1327
DdeI	CTNAG	9 cut(s)	192, 260, 339, 514, 882, 890, 919, 1001, 1217
DpnI	GATC	6 cut(s)	474, 801, 845, 1268, 1361, 1440
DpnII	GATC	6 cut(s)	472, 799, 843, 1266, 1359, 1438
DraIII	CACNNNGTG	1 cut(s)	358
Eam1104I	CTCTTC	1 cut(s)	1344
EarI	CTCTTC	1 cut(s)	1344
Ecl136II	GAGCTC	2 cut(s)	148, 651
Eco130I	CCWWGG	6 cut(s)	371, 427, 458, 630, 1154, 1363
Eco24I	GRGCYC	5 cut(s)	150, 243, 447, 653, 1153
Eco47I	GGWCC	4 cut(s)	677, 732, 747, 1106
Eco53kI	GAGCTC	2 cut(s)	148, 651
EcoICRI	GAGCTC	2 cut(s)	148, 651
EcoNI	CCTNNNNNAGG	1 cut(s)	64
EcoRII	CCWGG	1 cut(s)	65
EcoT14I	CCWWGG	6 cut(s)	371, 427, 458, 630, 1154, 1363
EcoT38I	GRGCYC	5 cut(s)	150, 243, 447, 653, 1153
ErhI	CCWWGG	6 cut(s)	371, 427, 458, 630, 1154, 1363
FaqI	GGGAC	3 cut(s)	476, 823, 939
FauI	CCCGC	1 cut(s)	667
FauNDI	CATATG	1 cut(s)	118
FbaI	TGATCA	1 cut(s)	472
Fnu4HI	GCNGC	3 cut(s)	270, 417, 941
FokI	GGATG	5 cut(s)	404, 695, 867, 1172, 1304
FriOI	GRGCYC	5 cut(s)	150, 243, 447, 653, 1153
Fsp4HI	GCNGC	3 cut(s)	270, 417, 941
FspBI	CTAG	1 cut(s)	1121
GluI	GCNGC	3 cut(s)	270, 417, 941
GsaI	CCCAGC	3 cut(s)	127, 221, 720
GsuI	CTGGAG	1 cut(s)	49
HaeIII	GGCC	3 cut(s)	207, 334, 1176
HapII	CCGG	3 cut(s)	680, 745, 969
HinfI	GANTC	5 cut(s)	188, 886, 1221, 1237, 1394
HpaII	CCGG	3 cut(s)	680, 745, 969
HphI	GGTGA	3 cut(s)	49, 447, 646
Hpy166II	GTNNAC	5 cut(s)	27, 175, 345, 735, 1140
Hpy188I	TCNGA	9 cut(s)	193, 477, 670, 689, 764, 848, 982, 1193, 1263
Hpy188III	TCNNGA	3 cut(s)	680, 1241, 1478
Hpy8I	GTNNAC	5 cut(s)	27, 175, 345, 735, 1140
Hpy99I	CGWCG	1 cut(s)	839
HpyAV	CCTTC	5 cut(s)	70, 119, 345, 631, 1008
HpyCH4III	ACNGT	3 cut(s)	31, 1127, 1321
HpyCH4IV	ACGT	1 cut(s)	837
HpyF10VI	GCNNNNNNNGC	3 cut(s)	103, 133, 275
HpyF3I	CTNAG	9 cut(s)	192, 260, 339, 514, 882, 890, 919, 1001, 1217
HpySE526I	ACGT	1 cut(s)	837
Kpn2I	TCCGGA	1 cut(s)	679
Ksp22I	TGATCA	1 cut(s)	472
Kzo9I	GATC	6 cut(s)	472, 799, 843, 1266, 1359, 1438
LmnI	GCTCC	5 cut(s)	145, 403, 656, 1156, 1468
Lsp1109I	GCAGC	3 cut(s)	281, 428, 927
LweI	GCATC	2 cut(s)	265, 661
MaeI	CTAG	1 cut(s)	1121
MaeII	ACGT	1 cut(s)	837
MaeIII	GTNAC	2 cut(s)	31, 1127
MalI	GATC	6 cut(s)	474, 801, 845, 1268, 1361, 1440
MboI	GATC	6 cut(s)	472, 799, 843, 1266, 1359, 1438
MboII	GAAGA	5 cut(s)	217, 791, 1361, 1403, 1410
MfeI	CAATTG	3 cut(s)	521, 1020, 1248
MhlI	GDGCHC	7 cut(s)	150, 203, 243, 266, 447, 653, 1153
MlyI	GAGTC	2 cut(s)	182, 895
MmeI	TCCRAC	2 cut(s)	676, 871
MroI	TCCGGA	1 cut(s)	679
MroXI	GAANNNNTTC	1 cut(s)	179
MseI	TTAA	3 cut(s)	657, 741, 1412
MslI	CAYNNNNRTG	3 cut(s)	315, 390, 1286
MspA1I	CMGCKG	1 cut(s)	127
MspI	CCGG	3 cut(s)	680, 745, 969
MspR9I	CCNGG	2 cut(s)	67, 970
MunI	CAATTG	3 cut(s)	521, 1020, 1248
Mva1269I	GAATGC	1 cut(s)	595
MvaI	CCWGG	1 cut(s)	67
MwoI	GCNNNNNNNGC	3 cut(s)	103, 133, 275
NciI	CCSGG	1 cut(s)	970
NcoI	CCATGG	3 cut(s)	371, 630, 1363
NdeI	CATATG	1 cut(s)	118
NdeII	GATC	6 cut(s)	472, 799, 843, 1266, 1359, 1438
NlaIV	GGNNCC	5 cut(s)	81, 678, 1152, 1315, 1451
NmuCI	GTSAC	2 cut(s)	31, 1127
NspI	RCATGY	2 cut(s)	604, 729
PciI	ACATGT	2 cut(s)	600, 725
PctI	GAATGC	1 cut(s)	595
PdmI	GAANNNNTTC	1 cut(s)	179
PfeI	GAWTC	3 cut(s)	1221, 1237, 1394
PflMI	CCANNNNNTGG	1 cut(s)	358
PkrI	GCNGC	3 cut(s)	271, 418, 942
PleI	GAGTC	2 cut(s)	182, 894
PpsI	GAGTC	2 cut(s)	182, 894
PscI	ACATGT	2 cut(s)	600, 725
Psp124BI	GAGCTC	2 cut(s)	150, 653
Psp6I	CCWGG	1 cut(s)	65
PspFI	CCCAGC	3 cut(s)	123, 217, 716
PspGI	CCWGG	1 cut(s)	65
PspN4I	GGNNCC	5 cut(s)	81, 678, 1152, 1315, 1451
PspPI	GGNCC	5 cut(s)	677, 732, 747, 1106, 1174
PvuII	CAGCTG	1 cut(s)	127
RsaI	GTAC	4 cut(s)	344, 724, 1198, 1328
RsaNI	GTAC	4 cut(s)	343, 723, 1197, 1327
RseI	CAYNNNNRTG	3 cut(s)	315, 390, 1286
SacI	GAGCTC	2 cut(s)	150, 653
SaqAI	TTAA	3 cut(s)	657, 741, 1412
SatI	GCNGC	3 cut(s)	270, 417, 941
Sau3AI	GATC	6 cut(s)	472, 799, 843, 1266, 1359, 1438
Sau96I	GGNCC	5 cut(s)	677, 732, 747, 1106, 1174
SchI	GAGTC	2 cut(s)	182, 895
ScrFI	CCNGG	2 cut(s)	67, 970
SduI	GDGCHC	7 cut(s)	150, 203, 243, 266, 447, 653, 1153
SfaNI	GCATC	2 cut(s)	265, 661
SinI	GGWCC	4 cut(s)	677, 732, 747, 1106
SmiMI	CAYNNNNRTG	3 cut(s)	315, 390, 1286
SmlI	CTYRAG	2 cut(s)	71, 1476
SmoI	CTYRAG	2 cut(s)	71, 1476
SsiI	CCGC	1 cut(s)	674
SspI	AATATT	1 cut(s)	1032
SspMI	CTAG	1 cut(s)	1121
SstI	GAGCTC	2 cut(s)	150, 653
StyD4I	CCNGG	2 cut(s)	65, 968
StyI	CCWWGG	6 cut(s)	371, 427, 458, 630, 1154, 1363
TaaI	ACNGT	3 cut(s)	31, 1127, 1321
TaiI	ACGT	1 cut(s)	840
TaqI	TCGA	1 cut(s)	842
TatI	WGTACW	2 cut(s)	342, 722
TfiI	GAWTC	3 cut(s)	1221, 1237, 1394
Tru1I	TTAA	3 cut(s)	657, 741, 1412
Tru9I	TTAA	3 cut(s)	657, 741, 1412
TscAI	CASTG	5 cut(s)	190, 352, 927, 1132, 1326
TseFI	GTSAC	2 cut(s)	31, 1127
TseI	GCWGC	3 cut(s)	269, 416, 940
Tsp45I	GTSAC	2 cut(s)	31, 1127
TspDTI	ATGAA	1 cut(s)	225
TspRI	CASTG	5 cut(s)	190, 352, 927, 1132, 1326
Van91I	CCANNNNNTGG	1 cut(s)	358
VpaK11BI	GGWCC	4 cut(s)	677, 732, 747, 1106
XagI	CCTNNNNNAGG	1 cut(s)	64
XapI	RAATTY	3 cut(s)	561, 906, 1007
XceI	RCATGY	2 cut(s)	604, 729
XcmI	CCANNNNNNNNNTGG	1 cut(s)	73
XmnI	GAANNNNTTC	1 cut(s)	179
XspI	CTAG	1 cut(s)	1121

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.