Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0003070

Physical Location & Seq

Genomic Coordinates Reverse (-)

11911445 .. 11912049

Gene Structure 605 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G005900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGTCCTATTACTTTTCAGATTGGTTCTCCATGGTGAGGGAGTTACAGAGCTCCATTAACATATTCTCGGATGCTGATCCAGTTGTTAGATGGGTTGGCGATGAGCAAGGCTTCACCAGAAGCACAAGCTGGTCCACCATTAATCGGAGTTCATTATCAATTGAGAATGCAAGCATTGAAGGTTATCTCAACACTGATGATCCACAAGGAACAGACTGGTTGCCGCCAGAATGTGACGTTTCGATAAGAAATGGATGGTTTTGGCACAAATCAGAGTCGCCTAAGAAGCTAAGCAAGCTACTTGAAATTTTTCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004560 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006516 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009100 GO:0009987 GO:0015928 GO:0016787 GO:0016798 GO:0019538 GO:0030163 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:1901135 GO:1901136 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00511 map00511

Pfam Domains

Protein Families

Alpha_L_fucos F5_F8_type_C

Protein Analysis

105

Amino Acids

12.18

Weight (kDa)

4.56

Isoelectric Point (pI)

79.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003070)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g28480 FvH4_7g28490
malus_domestica	MD01G1188500.v1.1 MD01G1188600.v1.1
prunus_persica	Prupe.2G285300_v2.0.a1
pyrus_communis	pycom01g20020 pycom01g20030
rosa_chinensis	RchiOBHm_Chr1g0375771 RchiOBHm_Chr1g0375821 RchiOBHm_Chr1g0375841 RchiOBHm_Chr1g0375871
rosa_laevigata	RLG00000026648 RLG00000026649 RLG00000026652 RLG00000026654
rosa_multiflora	Rmu_sc0000487.1_g000052 Rmu_sc0001943.1_g000004 Rmu_sc0001943.1_g000006 Rmu_sc0001943.1_g000007
rosa_roxburghii	Rroxscaffold_4G00282570 Rroxscaffold_4G00282610 Rroxscaffold_4G00282640
rosa_rugosa	Rorug01G0391800 Rorug01G0391900 Rorug01G0392000
rosa_samantha	Rh1AG403600 Rh1AG403700 Rh1AG403800 Rh1BG367200 Rh1BG367300 Rh1CG379800 Rh1CG380000 Rh1CG380100 Rh1DG397200 Rh1DG397300
rosa_wichuraiana	Rw0G000980 Rw0G023580 Rw4G005900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	224
AclWI	GGATC	2 cut(s)	71, 194
AcsI	RAATTY	1 cut(s)	306
AfiI	CCNNNNNNNGG	2 cut(s)	36, 144
AgsI	TTSAA	2 cut(s)	179, 305
AluBI	AGCT	4 cut(s)	51, 129, 289, 298
AluI	AGCT	4 cut(s)	51, 129, 289, 298
Alw21I	GWGCWC	1 cut(s)	53
AlwI	GGATC	2 cut(s)	71, 194
ApoI	RAATTY	1 cut(s)	306
AseI	ATTAAT	1 cut(s)	141
Asp700I	GAANNNNTTC	1 cut(s)	309
AspS9I	GGNCC	1 cut(s)	132
AsuHPI	GGTGA	2 cut(s)	46, 106
AvaII	GGWCC	1 cut(s)	132
BanII	GRGCYC	1 cut(s)	53
Bbv12I	GWGCWC	1 cut(s)	53
BccI	CCATC	2 cut(s)	84, 249
BisI	GCNGC	1 cut(s)	224
BlpI	GCTNAGC	1 cut(s)	290
BlsI	GCNGC	1 cut(s)	225
Bme18I	GGWCC	1 cut(s)	132
BmgT120I	GGNCC	1 cut(s)	132
BmsI	GCATC	1 cut(s)	61
Bpu1102I	GCTNAGC	1 cut(s)	290
BsaBI	GATNNNNATC	1 cut(s)	75
BsaJI	CCNNGG	1 cut(s)	30
Bsc4I	CCNNNNNNNGG	2 cut(s)	36, 144
Bse1I	ACTGG	2 cut(s)	80, 221
Bse8I	GATNNNNATC	1 cut(s)	75
BseDI	CCNNGG	1 cut(s)	30
BseGI	GGATG	2 cut(s)	76, 260
BseJI	GATNNNNATC	1 cut(s)	75
BseLI	CCNNNNNNNGG	2 cut(s)	36, 144
BseNI	ACTGG	2 cut(s)	80, 221
BsiHKAI	GWGCWC	1 cut(s)	53
BslI	CCNNNNNNNGG	2 cut(s)	36, 144
BsmI	GAATGC	1 cut(s)	172
Bsp1286I	GDGCHC	1 cut(s)	53
Bsp143I	GATC	2 cut(s)	76, 199
Bsp1720I	GCTNAGC	1 cut(s)	290
Bsp19I	CCATGG	1 cut(s)	30
BspACI	CCGC	1 cut(s)	224
BspPI	GGATC	2 cut(s)	71, 194
BsrI	ACTGG	2 cut(s)	80, 221
BssECI	CCNNGG	1 cut(s)	30
BssMI	GATC	2 cut(s)	76, 199
BssT1I	CCWWGG	1 cut(s)	30
BstC8I	GCNNGC	2 cut(s)	172, 296
BstDEI	CTNAG	2 cut(s)	282, 290
BstDSI	CCRYGG	1 cut(s)	30
BstF5I	GGATG	2 cut(s)	76, 260
BstKTI	GATC	2 cut(s)	79, 202
BstMBI	GATC	2 cut(s)	76, 199
BstMWI	GCNNNNNNNGC	2 cut(s)	286, 295
BtgI	CCRYGG	1 cut(s)	30
BtgZI	GCGATG	1 cut(s)	114
BtsCI	GGATG	2 cut(s)	76, 260
BtsIMutI	CAGTG	1 cut(s)	192
Cac8I	GCNNGC	2 cut(s)	172, 296
Cfr13I	GGNCC	1 cut(s)	132
CviAII	CATG	1 cut(s)	31
CviJI	RGCY	5 cut(s)	51, 111, 129, 289, 298
CviKI_1	RGCY	5 cut(s)	51, 111, 129, 289, 298
DdeI	CTNAG	2 cut(s)	282, 290
DpnI	GATC	2 cut(s)	78, 201
DpnII	GATC	2 cut(s)	76, 199
Ecl136II	GAGCTC	1 cut(s)	51
Eco130I	CCWWGG	1 cut(s)	30
Eco24I	GRGCYC	1 cut(s)	53
Eco47I	GGWCC	1 cut(s)	132
Eco53kI	GAGCTC	1 cut(s)	51
EcoICRI	GAGCTC	1 cut(s)	51
EcoT14I	CCWWGG	1 cut(s)	30
EcoT38I	GRGCYC	1 cut(s)	53
ErhI	CCWWGG	1 cut(s)	30
FaeI	CATG	1 cut(s)	34
FaiI	YATR	3 cut(s)	32, 62, 316
FatI	CATG	1 cut(s)	30
Fnu4HI	GCNGC	1 cut(s)	224
FokI	GGATG	2 cut(s)	83, 267
FriOI	GRGCYC	1 cut(s)	53
Fsp4HI	GCNGC	1 cut(s)	224
GluI	GCNGC	1 cut(s)	224
Hin1II	CATG	1 cut(s)	34
HinfI	GANTC	1 cut(s)	275
HphI	GGTGA	2 cut(s)	46, 106
Hpy166II	GTNNAC	1 cut(s)	135
Hpy188I	TCNGA	4 cut(s)	19, 70, 147, 274
Hpy8I	GTNNAC	1 cut(s)	135
HpyAV	CCTTC	1 cut(s)	173
HpyCH4IV	ACGT	1 cut(s)	237
HpyCH4V	TGCA	1 cut(s)	170
HpyF10VI	GCNNNNNNNGC	2 cut(s)	286, 295
HpyF3I	CTNAG	2 cut(s)	282, 290
HpySE526I	ACGT	1 cut(s)	237
Hsp92II	CATG	1 cut(s)	34
Kzo9I	GATC	2 cut(s)	76, 199
LmnI	GCTCC	1 cut(s)	56
LpnPI	CCDG	5 cut(s)	93, 115, 130, 202, 240
LweI	GCATC	1 cut(s)	61
MaeII	ACGT	1 cut(s)	237
MaeIII	GTNAC	2 cut(s)	42, 233
MalI	GATC	2 cut(s)	78, 201
MboI	GATC	2 cut(s)	76, 199
MfeI	CAATTG	1 cut(s)	159
MhlI	GDGCHC	1 cut(s)	53
MluCI	AATT	2 cut(s)	159, 306
MlyI	GAGTC	1 cut(s)	284
MnlI	CCTC	1 cut(s)	30
MroXI	GAANNNNTTC	1 cut(s)	309
MseI	TTAA	2 cut(s)	57, 141
MunI	CAATTG	1 cut(s)	159
Mva1269I	GAATGC	1 cut(s)	172
MwoI	GCNNNNNNNGC	2 cut(s)	286, 295
NcoI	CCATGG	1 cut(s)	30
NdeII	GATC	2 cut(s)	76, 199
NlaIII	CATG	1 cut(s)	34
NmuCI	GTSAC	1 cut(s)	233
PctI	GAATGC	1 cut(s)	172
PdmI	GAANNNNTTC	1 cut(s)	309
PkrI	GCNGC	1 cut(s)	225
PleI	GAGTC	1 cut(s)	283
PpsI	GAGTC	1 cut(s)	283
PshBI	ATTAAT	1 cut(s)	141
Psp124BI	GAGCTC	1 cut(s)	53
PspPI	GGNCC	1 cut(s)	132
SacI	GAGCTC	1 cut(s)	53
SaqAI	TTAA	2 cut(s)	57, 141
SatI	GCNGC	1 cut(s)	224
Sau3AI	GATC	2 cut(s)	76, 199
Sau96I	GGNCC	1 cut(s)	132
SchI	GAGTC	1 cut(s)	284
SduI	GDGCHC	1 cut(s)	53
SetI	ASST	6 cut(s)	53, 131, 184, 240, 291, 300
SfaNI	GCATC	1 cut(s)	61
SinI	GGWCC	1 cut(s)	132
Sse9I	AATT	2 cut(s)	159, 306
SsiI	CCGC	1 cut(s)	224
SstI	GAGCTC	1 cut(s)	53
StyI	CCWWGG	1 cut(s)	30
TaiI	ACGT	1 cut(s)	240
TaqI	TCGA	1 cut(s)	242
TasI	AATT	2 cut(s)	159, 306
TauI	GCSGC	1 cut(s)	226
Tru1I	TTAA	2 cut(s)	57, 141
Tru9I	TTAA	2 cut(s)	57, 141
TscAI	CASTG	1 cut(s)	199
TseFI	GTSAC	1 cut(s)	233
Tsp45I	GTSAC	1 cut(s)	233
TspDTI	ATGAA	1 cut(s)	141
TspRI	CASTG	1 cut(s)	199
VpaK11BI	GGWCC	1 cut(s)	132
VspI	ATTAAT	1 cut(s)	141
XapI	RAATTY	1 cut(s)	306
XcmI	CCANNNNNNNNNTGG	1 cut(s)	87
XmnI	GAANNNNTTC	1 cut(s)	309

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.