Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0003070

Physical Location & Seq

Genomic Coordinates Reverse (-)

18499447 .. 18500203

Gene Structure 757 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g20030.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGGACGGAGGCACCTTATATTCGTTGGGGGCAAATGCCCTCACTCACATTGATCTTAAAAGAAAAAAGAGTACATATGGATGGTTTTGGCATAAGTCAGAGTCACCGAAGAAGCTAAGCAAGCTACTTGAAATTTACTACAACTCGGTGGGGAGAAATAGTGTACTGCTACTCAATGTGCCTCCTAATTCGACTGGACTTATAGCCGACGAAGATGTTCAAAGACTGAGAGAATTCAGAAGTGCAATCGACACAATATTTTCAACCAATTTAGCAGAGCAATGTTCTATTGAAGTTAGTAGCCAAAGAGGAGGCAAGGGAGGAGGTTTTGGACCTGAAAATATGCTAGACAATGACCATATGTGGACATATTGGGCTCCAACGGATGATGAAAAGGAGAACCATTGGATTGAATTTAGAAGTACAGGATTAGATGAAGGGCTGAGATTCAATGTGATTCGAATCCAGGAGGCGATCGGGCTTGGTCAGAGGATCAAACGGCACGTAATTTACGTGGACGGTAAGAGGGTGGCAAATGGAACCACAGTAGGGTACAAGAGGCTTCACAGACTTGAAGGGGGAGTTGTACATGGCAAAATTGTAAGAATAAAAATTGGAGATTCAAGGGGGCTGCCTTTAATTTCATCCATTGGCCTGTATTTTGATCCCTTTTGGCACCCAATTGGGCATCCATCTGAACAAAAAATAGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004560 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006516 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009100 GO:0009987 GO:0015928 GO:0016787 GO:0016798 GO:0019538 GO:0030163 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:1901135 GO:1901136 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00511 map00511

Pfam Domains

Protein Families

Alpha_L_fucos F5_F8_type_C

Protein Analysis

238

Amino Acids

26.69

Weight (kDa)

9.08

Isoelectric Point (pI)

38.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003070)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g28480 FvH4_7g28490
malus_domestica	MD01G1188500.v1.1 MD01G1188600.v1.1
prunus_persica	Prupe.2G285300_v2.0.a1
pyrus_communis	pycom01g20020 pycom01g20030
rosa_chinensis	RchiOBHm_Chr1g0375771 RchiOBHm_Chr1g0375821 RchiOBHm_Chr1g0375841 RchiOBHm_Chr1g0375871
rosa_laevigata	RLG00000026648 RLG00000026649 RLG00000026652 RLG00000026654
rosa_multiflora	Rmu_sc0000487.1_g000052 Rmu_sc0001943.1_g000004 Rmu_sc0001943.1_g000006 Rmu_sc0001943.1_g000007
rosa_roxburghii	Rroxscaffold_4G00282570 Rroxscaffold_4G00282610 Rroxscaffold_4G00282640
rosa_rugosa	Rorug01G0391800 Rorug01G0391900 Rorug01G0392000
rosa_samantha	Rh1AG403600 Rh1AG403700 Rh1AG403800 Rh1BG367200 Rh1BG367300 Rh1CG379800 Rh1CG380000 Rh1CG380100 Rh1DG397200 Rh1DG397300
rosa_wichuraiana	Rw0G000980 Rw0G023580 Rw4G005900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	11, 675
AclWI	GGATC	2 cut(s)	500, 659
AcsI	RAATTY	3 cut(s)	132, 233, 413
AfaI	GTAC	5 cut(s)	73, 165, 424, 554, 588
AfiI	CCNNNNNNNGG	1 cut(s)	549
AgsI	TTSAA	8 cut(s)	131, 221, 264, 293, 413, 451, 575, 624
AjnI	CCWGG	1 cut(s)	465
AluBI	AGCT	2 cut(s)	115, 124
AluI	AGCT	2 cut(s)	115, 124
AlwI	GGATC	2 cut(s)	500, 659
AoxI	GGCC	1 cut(s)	652
ApeKI	GCWGC	1 cut(s)	631
ApoI	RAATTY	3 cut(s)	132, 233, 413
Asp700I	GAANNNNTTC	1 cut(s)	216
AspS9I	GGNCC	1 cut(s)	332
AsuHPI	GGTGA	1 cut(s)	96
AsuII	TTCGAA	1 cut(s)	460
AvaII	GGWCC	1 cut(s)	332
BanI	GGYRCC	2 cut(s)	11, 675
BanII	GRGCYC	1 cut(s)	379
BbvI	GCAGC	1 cut(s)	618
BccI	CCATC	2 cut(s)	75, 700
BceAI	ACGGC	1 cut(s)	515
BciT130I	CCWGG	1 cut(s)	467
BfaI	CTAG	1 cut(s)	347
BisI	GCNGC	1 cut(s)	632
BlpI	GCTNAGC	1 cut(s)	116
BlsI	GCNGC	1 cut(s)	633
Bme1390I	CCNGG	1 cut(s)	467
Bme18I	GGWCC	1 cut(s)	332
BmgT120I	GGNCC	1 cut(s)	332
BmiI	GGNNCC	4 cut(s)	13, 378, 541, 677
BmrFI	CCNGG	1 cut(s)	467
BmsI	GCATC	1 cut(s)	697
Bpu1102I	GCTNAGC	1 cut(s)	116
Bpu14I	TTCGAA	1 cut(s)	460
BsaAI	YACGTR	2 cut(s)	505, 514
BsaBI	GATNNNNATC	1 cut(s)	461
BsaXI	ACNNNNNCTCC	2 cut(s)	145, 175
Bsc4I	CCNNNNNNNGG	1 cut(s)	549
Bse1I	ACTGG	1 cut(s)	199
Bse3DI	GCAATG	1 cut(s)	287
Bse8I	GATNNNNATC	1 cut(s)	461
BseBI	CCWGG	1 cut(s)	467
BseGI	GGATG	4 cut(s)	86, 391, 644, 688
BseJI	GATNNNNATC	1 cut(s)	461
BseLI	CCNNNNNNNGG	1 cut(s)	549
BseMI	GCAATG	1 cut(s)	287
BseMII	CTCAG	2 cut(s)	218, 434
BseNI	ACTGG	1 cut(s)	199
BseRI	GAGGAG	2 cut(s)	324, 336
BseXI	GCAGC	1 cut(s)	618
Bsh1285I	CGRYCG	1 cut(s)	477
BshFI	GGCC	1 cut(s)	654
BshNI	GGYRCC	2 cut(s)	11, 675
BsiEI	CGRYCG	1 cut(s)	477
BslI	CCNNNNNNNGG	1 cut(s)	549
BsnI	GGCC	1 cut(s)	654
Bsp119I	TTCGAA	1 cut(s)	460
Bsp1286I	GDGCHC	1 cut(s)	379
Bsp1407I	TGTACA	1 cut(s)	586
Bsp143I	GATC	4 cut(s)	52, 474, 492, 664
Bsp1720I	GCTNAGC	1 cut(s)	116
BspANI	GGCC	1 cut(s)	654
BspCNI	CTCAG	2 cut(s)	219, 435
BspLI	GGNNCC	4 cut(s)	13, 378, 541, 677
BspPI	GGATC	2 cut(s)	500, 659
BspT104I	TTCGAA	1 cut(s)	460
BspT107I	GGYRCC	2 cut(s)	11, 675
BsrDI	GCAATG	1 cut(s)	287
BsrGI	TGTACA	1 cut(s)	586
BsrI	ACTGG	1 cut(s)	199
BssMI	GATC	4 cut(s)	52, 474, 492, 664
Bst2UI	CCWGG	1 cut(s)	467
Bst4CI	ACNGT	2 cut(s)	521, 547
BstAUI	TGTACA	1 cut(s)	586
BstBAI	YACGTR	2 cut(s)	505, 514
BstBI	TTCGAA	1 cut(s)	460
BstC8I	GCNNGC	1 cut(s)	122
BstDEI	CTNAG	3 cut(s)	116, 227, 443
BstF5I	GGATG	4 cut(s)	86, 391, 644, 688
BstKTI	GATC	4 cut(s)	55, 477, 495, 667
BstMBI	GATC	4 cut(s)	52, 474, 492, 664
BstMCI	CGRYCG	1 cut(s)	477
BstMWI	GCNNNNNNNGC	1 cut(s)	121
BstNI	CCWGG	1 cut(s)	467
BstSCI	CCNGG	1 cut(s)	465
BstV1I	GCAGC	1 cut(s)	618
BsuRI	GGCC	1 cut(s)	654
BtsCI	GGATG	4 cut(s)	86, 391, 644, 688
Cac8I	GCNNGC	1 cut(s)	122
Cfr13I	GGNCC	1 cut(s)	332
Csp6I	GTAC	5 cut(s)	72, 164, 423, 553, 587
CviAII	CATG	1 cut(s)	590
CviQI	GTAC	5 cut(s)	72, 164, 423, 553, 587
DdeI	CTNAG	3 cut(s)	116, 227, 443
DpnI	GATC	4 cut(s)	54, 476, 494, 666
DpnII	GATC	4 cut(s)	52, 474, 492, 664
Eco24I	GRGCYC	1 cut(s)	379
Eco47I	GGWCC	1 cut(s)	332
EcoRI	GAATTC	1 cut(s)	233
EcoRII	CCWGG	1 cut(s)	465
EcoT38I	GRGCYC	1 cut(s)	379
FaeI	CATG	1 cut(s)	593
FatI	CATG	1 cut(s)	589
FauNDI	CATATG	2 cut(s)	76, 360
Fnu4HI	GCNGC	1 cut(s)	632
FokI	GGATG	4 cut(s)	93, 398, 631, 675
FriOI	GRGCYC	1 cut(s)	379
Fsp4HI	GCNGC	1 cut(s)	632
FspBI	CTAG	1 cut(s)	347
GluI	GCNGC	1 cut(s)	632
HaeIII	GGCC	1 cut(s)	654
Hin1II	CATG	1 cut(s)	593
HinfI	GANTC	5 cut(s)	101, 447, 457, 462, 620
HphI	GGTGA	1 cut(s)	96
Hpy166II	GTNNAC	3 cut(s)	164, 366, 517
Hpy188I	TCNGA	4 cut(s)	100, 239, 489, 697
Hpy8I	GTNNAC	3 cut(s)	164, 366, 517
Hpy99I	CGWCG	1 cut(s)	212
HpyAV	CCTTC	2 cut(s)	431, 569
HpyCH4III	ACNGT	2 cut(s)	521, 547
HpyCH4IV	ACGT	2 cut(s)	504, 513
HpyCH4V	TGCA	1 cut(s)	245
HpyF10VI	GCNNNNNNNGC	1 cut(s)	121
HpyF3I	CTNAG	3 cut(s)	116, 227, 443
HpySE526I	ACGT	2 cut(s)	504, 513
Hsp92II	CATG	1 cut(s)	593
Kzo9I	GATC	4 cut(s)	52, 474, 492, 664
LmnI	GCTCC	1 cut(s)	382
LpnPI	CCDG	6 cut(s)	180, 348, 411, 452, 479, 668
Lsp1109I	GCAGC	1 cut(s)	618
LweI	GCATC	1 cut(s)	697
MaeI	CTAG	1 cut(s)	347
MaeII	ACGT	2 cut(s)	504, 513
MaeIII	GTNAC	1 cut(s)	102
MalI	GATC	4 cut(s)	54, 476, 494, 666
MboI	GATC	4 cut(s)	52, 474, 492, 664
MboII	GAAGA	2 cut(s)	121, 224
MfeI	CAATTG	1 cut(s)	681
MhlI	GDGCHC	1 cut(s)	379
MlyI	GAGTC	1 cut(s)	110
MmeI	TCCRAC	1 cut(s)	404
MroXI	GAANNNNTTC	1 cut(s)	216
MseI	TTAA	2 cut(s)	57, 638
MslI	CAYNNNNRTG	1 cut(s)	79
MspR9I	CCNGG	1 cut(s)	467
MunI	CAATTG	1 cut(s)	681
MvaI	CCWGG	1 cut(s)	467
MwoI	GCNNNNNNNGC	1 cut(s)	121
NdeI	CATATG	2 cut(s)	76, 360
NdeII	GATC	4 cut(s)	52, 474, 492, 664
NlaIII	CATG	1 cut(s)	593
NlaIV	GGNNCC	4 cut(s)	13, 378, 541, 677
NmuCI	GTSAC	1 cut(s)	102
NspV	TTCGAA	1 cut(s)	460
PcsI	WCGNNNNNNNCGW	1 cut(s)	510
PdmI	GAANNNNTTC	1 cut(s)	216
PfeI	GAWTC	4 cut(s)	447, 457, 462, 620
PfoI	TCCNGGA	1 cut(s)	465
PkrI	GCNGC	1 cut(s)	633
Ple19I	CGATCG	1 cut(s)	477
PleI	GAGTC	1 cut(s)	109
PpsI	GAGTC	1 cut(s)	109
Ppu21I	YACGTR	2 cut(s)	505, 514
Psp6I	CCWGG	1 cut(s)	465
PspGI	CCWGG	1 cut(s)	465
PspN4I	GGNNCC	4 cut(s)	13, 378, 541, 677
PspPI	GGNCC	1 cut(s)	332
PvuI	CGATCG	1 cut(s)	477
RsaI	GTAC	5 cut(s)	73, 165, 424, 554, 588
RsaNI	GTAC	5 cut(s)	72, 164, 423, 553, 587
RseI	CAYNNNNRTG	1 cut(s)	79
SaqAI	TTAA	2 cut(s)	57, 638
SatI	GCNGC	1 cut(s)	632
Sau3AI	GATC	4 cut(s)	52, 474, 492, 664
Sau96I	GGNCC	1 cut(s)	332
SchI	GAGTC	1 cut(s)	110
ScrFI	CCNGG	1 cut(s)	467
SduI	GDGCHC	1 cut(s)	379
SetI	ASST	7 cut(s)	17, 117, 126, 328, 337, 507, 516
SfaNI	GCATC	1 cut(s)	697
SfuI	TTCGAA	1 cut(s)	460
SinI	GGWCC	1 cut(s)	332
SmiMI	CAYNNNNRTG	1 cut(s)	79
SspI	AATATT	1 cut(s)	258
SspMI	CTAG	1 cut(s)	347
StyD4I	CCNGG	1 cut(s)	465
TaaI	ACNGT	2 cut(s)	521, 547
TaiI	ACGT	2 cut(s)	507, 516
TaqI	TCGA	3 cut(s)	191, 249, 460
TatI	WGTACW	4 cut(s)	71, 163, 422, 586
TfiI	GAWTC	4 cut(s)	447, 457, 462, 620
Tru1I	TTAA	2 cut(s)	57, 638
Tru9I	TTAA	2 cut(s)	57, 638
TseFI	GTSAC	1 cut(s)	102
TseI	GCWGC	1 cut(s)	631
Tsp45I	GTSAC	1 cut(s)	102
TspDTI	ATGAA	3 cut(s)	405, 450, 633
TspGWI	ACGGA	2 cut(s)	21, 398
VpaK11BI	GGWCC	1 cut(s)	332
XapI	RAATTY	3 cut(s)	132, 233, 413
XmnI	GAANNNNTTC	1 cut(s)	216
XspI	CTAG	1 cut(s)	347

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.