Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00028

Orthogroup ID

OG0003070

Physical Location & Seq

Genomic Coordinates Forward (+)

9544 .. 11148

Gene Structure 1605 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G000980.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1347 bp

ATGTTCCTCCATTTTGGAGTGAACACATTCACTGGCCTTGAGGGTGGAACCGGGCATGAAAACCCAGCCATATTCAACCCAGTTGTGATTGATGCGAGCCAATGGGTCAGTGTAGCAGAAGATGCAGGCATGTCACTAATGATACTTACTGCAAAGCACCATGATGGGTTTTGCTTGTGGCCTTCTAAGTACACTGACCATTCTGTGGAAAGAAATCCTTGGAAAAATGGCCATGGCGATGTTGTTCAGGAGTTGGTTAATGCGGCTAAGCCCCGTGGGATTGACGTTGGGCTGTATCTCTCACCCTGGGACAGACATGATCGCAGATATGGGCTGGAGAAGCCATATAACGAATACTACTTGGCTCAGTTACAAGAGCTACTCAGTAGTCAACTGTTTATATCTAATTTGTTCTTTGTTGACGGATATGGGAGTTTAAGAGAAATTTGGTTTGATGGATATAAAGGTGAACATGCGCCGAACATGTCCTATTATTTTACAGATTGGTTCTCTATGGTGAAGGAGTTGCAGAGTTCCATTAACATATTTTCTGATGCTGGTCCTGATGTTAGATGGGTTGGAAATGAGGCTGGGTTTGCGGGGAAAACATGCTGGTCCACCATCAATCGGACCTCGTTATCAATTGGGAATGCAAGCATTGAGGATTATCTCAACAAAGGTGATCCAAAAGGGACAGATTGGTTGCCAGCAGAGTGCGATGTCTCAATCAGAAAAGGATGGTTTTGGCATAGTTCAGAGTCACCTAAGAAGCTAAGCCAGCTACTCGAAATTTACTATAACTCAGTAGGACGAAATGCTGTGTTACCACTCAACGTGCCTCCTAATTCGACAGGGCTCATATCCGAAGTAGATGTCCAAAGACTCCGAGAATTCAGAATTGCAATCGACACCATATTTTCGACCAATGTAGCAGAGAAATGCTCCATCAAGGTGAGTAGCCAAAGAGGGGGTACAGGAGGAGGTTTTGGACCTGAGAATGTGCTAGACAGTGACCATTTGTGGACATATTGGGCTCTAAGGGATGGTGACAAAGAGGACCACTGGATTGAATTCAGAGCAGATGAAGGGATGAGGTTCAATGTGATCAGGATTCAAGAGGCGATTGGGCTAGGTCATAGGATCAAACGGCACGAAATTTGTGTCGATGGTAAAATAGTAGTTAATGGAACCACAGTGGGTCACAAGGGACTTCACAGACTTGAAGAGGGAGTAGTCCATGGCCAAACAGTAAGAATTAGAATTAAAGAATCAAGAGGAGGGCTTCCTTTAATTTCATCCATTGGCCTGCATTTTGATCCCTATTGGCCCCCAGATAAAGGTGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004560 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006516 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009100 GO:0009987 GO:0015928 GO:0016787 GO:0016798 GO:0019538 GO:0030163 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:1901135 GO:1901136 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00511 map00511

Pfam Domains

Protein Families

Alpha_L_fucos F5_F8_type_C

Protein Analysis

448

Amino Acids

50.42

Weight (kDa)

5.87

Isoelectric Point (pI)

35.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Alpha_L_fucos	PF01120	24 - 297	9.1e-30	Alpha-L-fucosidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003070)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g28480 FvH4_7g28490
malus_domestica	MD01G1188500.v1.1 MD01G1188600.v1.1
prunus_persica	Prupe.2G285300_v2.0.a1
pyrus_communis	pycom01g20020 pycom01g20030
rosa_chinensis	RchiOBHm_Chr1g0375771 RchiOBHm_Chr1g0375821 RchiOBHm_Chr1g0375841 RchiOBHm_Chr1g0375871
rosa_laevigata	RLG00000026648 RLG00000026649 RLG00000026652 RLG00000026654
rosa_multiflora	Rmu_sc0000487.1_g000052 Rmu_sc0001943.1_g000004 Rmu_sc0001943.1_g000006 Rmu_sc0001943.1_g000007
rosa_roxburghii	Rroxscaffold_4G00282570 Rroxscaffold_4G00282610 Rroxscaffold_4G00282640
rosa_rugosa	Rorug01G0391800 Rorug01G0391900 Rorug01G0392000
rosa_samantha	Rh1AG403600 Rh1AG403700 Rh1AG403800 Rh1BG367200 Rh1BG367300 Rh1CG379800 Rh1CG380000 Rh1CG380100 Rh1DG397200 Rh1DG397300
rosa_wichuraiana	Rw0G000980 Rw0G023580 Rw4G005900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	205
AciI	CCGC	2 cut(s)	263, 599
AclWI	GGATC	3 cut(s)	677, 1148, 1310
AcoI	YGGCCR	2 cut(s)	229, 1240
AcsI	RAATTY	5 cut(s)	444, 789, 890, 1070, 1155
AfaI	GTAC	2 cut(s)	191, 973
AfiI	CCNNNNNNNGG	4 cut(s)	205, 627, 967, 1337
AflIII	ACRYGT	1 cut(s)	483
AgsI	TTSAA	5 cut(s)	76, 1070, 1099, 1115, 1223
AjnI	CCWGG	1 cut(s)	305
AluBI	AGCT	3 cut(s)	379, 772, 781
AluI	AGCT	3 cut(s)	379, 772, 781
Alw26I	GTCTC	1 cut(s)	727
AlwI	GGATC	3 cut(s)	677, 1148, 1310
AoxI	GGCC	6 cut(s)	34, 179, 229, 1240, 1303, 1325
ApoI	RAATTY	5 cut(s)	444, 789, 890, 1070, 1155
ArsI	GACNNNNNNTTYG	4 cut(s)	858, 890, 1146, 1178
Asp700I	GAANNNNTTC	1 cut(s)	26
AspLEI	GCGC	1 cut(s)	478
AspS9I	GGNCC	6 cut(s)	560, 615, 630, 989, 1057, 1326
AsuC2I	CCSGG	1 cut(s)	52
AsuHPI	GGTGA	7 cut(s)	294, 479, 529, 692, 753, 964, 1058
AvaII	GGWCC	5 cut(s)	560, 615, 630, 989, 1057
BalI	TGGCCA	2 cut(s)	231, 1242
BanII	GRGCYC	2 cut(s)	858, 1036
BccI	CCATC	8 cut(s)	158, 449, 567, 629, 732, 953, 1037, 1160
BceAI	ACGGC	1 cut(s)	1163
BciT130I	CCWGG	1 cut(s)	307
BclI	TGATCA	1 cut(s)	1104
BcnI	CCSGG	1 cut(s)	52
BcoDI	GTCTC	1 cut(s)	727
BfaI	CTAG	2 cut(s)	1004, 1130
BisI	GCNGC	1 cut(s)	264
BlpI	GCTNAGC	2 cut(s)	267, 773
BlsI	GCNGC	1 cut(s)	265
Bme1390I	CCNGG	2 cut(s)	52, 307
Bme18I	GGWCC	5 cut(s)	560, 615, 630, 989, 1057
BmgT120I	GGNCC	6 cut(s)	560, 615, 630, 989, 1057, 1326
BmiI	GGNNCC	3 cut(s)	49, 1189, 1328
BmrFI	CCNGG	2 cut(s)	52, 307
BmrI	ACTGGG	1 cut(s)	74
BmsI	GCATC	3 cut(s)	82, 112, 544
BmuI	ACTGGG	1 cut(s)	74
BplI	GAGNNNNNCTC	2 cut(s)	926, 958
BpmI	CTGGAG	1 cut(s)	356
Bpu1102I	GCTNAGC	2 cut(s)	267, 773
BpuEI	CTTGAG	1 cut(s)	59
BpuMI	CCSGG	1 cut(s)	52
BsaJI	CCNNGG	6 cut(s)	218, 232, 274, 305, 306, 1237
Bsc4I	CCNNNNNNNGG	4 cut(s)	205, 627, 967, 1337
Bse1I	ACTGG	3 cut(s)	37, 80, 1067
BseBI	CCWGG	1 cut(s)	307
BseDI	CCNNGG	6 cut(s)	218, 232, 274, 305, 306, 1237
BseGI	GGATG	4 cut(s)	743, 1048, 1095, 1295
BseLI	CCNNNNNNNGG	4 cut(s)	205, 627, 967, 1337
BseMII	CTCAG	4 cut(s)	380, 397, 816, 984
BseNI	ACTGG	3 cut(s)	37, 80, 1067
BseRI	GAGGAG	2 cut(s)	993, 1290
BseYI	CCCAGC	2 cut(s)	64, 590
BshFI	GGCC	6 cut(s)	36, 181, 231, 1242, 1305, 1327
BsiSI	CCGG	1 cut(s)	51
BslFI	GGGAC	3 cut(s)	323, 706, 1221
BslI	CCNNNNNNNGG	4 cut(s)	205, 627, 967, 1337
BsmAI	GTCTC	1 cut(s)	727
BsmFI	GGGAC	3 cut(s)	323, 706, 1221
BsmI	GAATGC	1 cut(s)	655
BsnI	GGCC	6 cut(s)	36, 181, 231, 1242, 1305, 1327
Bsp1286I	GDGCHC	2 cut(s)	858, 1036
Bsp143I	GATC	5 cut(s)	319, 682, 1104, 1140, 1315
Bsp1720I	GCTNAGC	2 cut(s)	267, 773
Bsp19I	CCATGG	2 cut(s)	232, 1237
BspACI	CCGC	2 cut(s)	263, 599
BspANI	GGCC	6 cut(s)	36, 181, 231, 1242, 1305, 1327
BspCNI	CTCAG	4 cut(s)	379, 396, 815, 985
BspLI	GGNNCC	3 cut(s)	49, 1189, 1328
BspPI	GGATC	3 cut(s)	677, 1148, 1310
BsrI	ACTGG	3 cut(s)	37, 80, 1067
BssECI	CCNNGG	6 cut(s)	218, 232, 274, 305, 306, 1237
BssMI	GATC	5 cut(s)	319, 682, 1104, 1140, 1315
BssT1I	CCWWGG	3 cut(s)	218, 232, 1237
Bst2UI	CCWGG	1 cut(s)	307
Bst4CI	ACNGT	4 cut(s)	396, 1010, 1195, 1249
Bst6I	CTCTTC	1 cut(s)	1218
BstAPI	GCANNNNNTGC	1 cut(s)	122
BstC8I	GCNNGC	6 cut(s)	97, 127, 655, 708, 779, 1307
BstDEI	CTNAG	9 cut(s)	186, 267, 366, 383, 765, 773, 802, 993, 1037
BstDSI	CCRYGG	3 cut(s)	232, 274, 1237
BstF5I	GGATG	4 cut(s)	743, 1048, 1095, 1295
BstHHI	GCGC	1 cut(s)	478
BstKTI	GATC	5 cut(s)	322, 685, 1107, 1143, 1318
BstMAI	GTCTC	1 cut(s)	727
BstMBI	GATC	5 cut(s)	319, 682, 1104, 1140, 1315
BstMWI	GCNNNNNNNGC	4 cut(s)	122, 340, 596, 778
BstNI	CCWGG	1 cut(s)	307
BstNSI	RCATGY	4 cut(s)	133, 476, 487, 612
BstSCI	CCNGG	2 cut(s)	50, 305
BsuRI	GGCC	6 cut(s)	36, 181, 231, 1242, 1305, 1327
BtgI	CCRYGG	3 cut(s)	232, 274, 1237
BtgZI	GCGATG	2 cut(s)	252, 732
BtsCI	GGATG	4 cut(s)	743, 1048, 1095, 1295
BtsIMutI	CAGTG	6 cut(s)	30, 115, 192, 1015, 1060, 1200
Cac8I	GCNNGC	6 cut(s)	97, 127, 655, 708, 779, 1307
CfoI	GCGC	1 cut(s)	478
Cfr13I	GGNCC	6 cut(s)	560, 615, 630, 989, 1057, 1326
Csp6I	GTAC	2 cut(s)	190, 972
CviAII	CATG	9 cut(s)	56, 130, 161, 233, 317, 473, 484, 609, 1238
CviQI	GTAC	2 cut(s)	190, 972
DdeI	CTNAG	9 cut(s)	186, 267, 366, 383, 765, 773, 802, 993, 1037
DpnI	GATC	5 cut(s)	321, 684, 1106, 1142, 1317
DpnII	GATC	5 cut(s)	319, 682, 1104, 1140, 1315
EaeI	YGGCCR	2 cut(s)	229, 1240
Eam1104I	CTCTTC	1 cut(s)	1218
EarI	CTCTTC	1 cut(s)	1218
Eco130I	CCWWGG	3 cut(s)	218, 232, 1237
Eco24I	GRGCYC	2 cut(s)	858, 1036
Eco47I	GGWCC	5 cut(s)	560, 615, 630, 989, 1057
EcoRI	GAATTC	2 cut(s)	890, 1070
EcoRII	CCWGG	1 cut(s)	305
EcoT14I	CCWWGG	3 cut(s)	218, 232, 1237
EcoT38I	GRGCYC	2 cut(s)	858, 1036
ErhI	CCWWGG	3 cut(s)	218, 232, 1237
FaeI	CATG	9 cut(s)	59, 133, 164, 236, 320, 476, 487, 612, 1241
FalI	AAGNNNNNCTT	2 cut(s)	202, 234
FaqI	GGGAC	3 cut(s)	323, 706, 1221
FatI	CATG	9 cut(s)	55, 129, 160, 232, 316, 472, 483, 608, 1237
FauI	CCCGC	1 cut(s)	592
FbaI	TGATCA	1 cut(s)	1104
Fnu4HI	GCNGC	1 cut(s)	264
FokI	GGATG	4 cut(s)	750, 1055, 1102, 1282
FriOI	GRGCYC	2 cut(s)	858, 1036
Fsp4HI	GCNGC	1 cut(s)	264
FspBI	CTAG	2 cut(s)	1004, 1130
GlaI	GCGC	1 cut(s)	477
GluI	GCNGC	1 cut(s)	264
GsaI	CCCAGC	2 cut(s)	68, 594
GsuI	CTGGAG	1 cut(s)	356
HaeIII	GGCC	6 cut(s)	36, 181, 231, 1242, 1305, 1327
HapII	CCGG	1 cut(s)	51
HhaI	GCGC	1 cut(s)	478
Hin1II	CATG	9 cut(s)	59, 133, 164, 236, 320, 476, 487, 612, 1241
Hin6I	GCGC	1 cut(s)	476
HinP1I	GCGC	1 cut(s)	476
HincII	GTYRAC	2 cut(s)	392, 421
HindII	GTYRAC	2 cut(s)	392, 421
HinfI	GANTC	4 cut(s)	758, 882, 1111, 1268
HpaII	CCGG	1 cut(s)	51
HphI	GGTGA	7 cut(s)	294, 479, 529, 692, 753, 964, 1058
Hpy166II	GTNNAC	7 cut(s)	22, 192, 392, 421, 470, 618, 1023
Hpy188I	TCNGA	8 cut(s)	553, 630, 731, 757, 865, 887, 896, 1076
Hpy188III	TCNNGA	5 cut(s)	248, 563, 1108, 1115, 1272
Hpy8I	GTNNAC	7 cut(s)	22, 192, 392, 421, 470, 618, 1023
HpyAV	CCTTC	3 cut(s)	192, 514, 1079
HpyCH4III	ACNGT	4 cut(s)	396, 1010, 1195, 1249
HpyCH4IV	ACGT	2 cut(s)	285, 834
HpyCH4V	TGCA	6 cut(s)	125, 152, 529, 653, 902, 1309
HpyF10VI	GCNNNNNNNGC	4 cut(s)	122, 340, 596, 778
HpyF3I	CTNAG	9 cut(s)	186, 267, 366, 383, 765, 773, 802, 993, 1037
HpySE526I	ACGT	2 cut(s)	285, 834
Hsp92II	CATG	9 cut(s)	59, 133, 164, 236, 320, 476, 487, 612, 1241
HspAI	GCGC	1 cut(s)	476
Ksp22I	TGATCA	1 cut(s)	1104
Kzo9I	GATC	5 cut(s)	319, 682, 1104, 1140, 1315
LmnI	GCTCC	1 cut(s)	947
LweI	GCATC	3 cut(s)	82, 112, 544
MaeI	CTAG	2 cut(s)	1004, 1130
MaeII	ACGT	2 cut(s)	285, 834
MaeIII	GTNAC	7 cut(s)	132, 369, 759, 822, 1010, 1046, 1199
MalI	GATC	5 cut(s)	321, 684, 1106, 1142, 1317
MboI	GATC	5 cut(s)	319, 682, 1104, 1140, 1315
MboII	GAAGA	2 cut(s)	131, 1235
MfeI	CAATTG	1 cut(s)	642
MhlI	GDGCHC	2 cut(s)	858, 1036
MlsI	TGGCCA	2 cut(s)	231, 1242
MluNI	TGGCCA	2 cut(s)	231, 1242
MlyI	GAGTC	2 cut(s)	767, 876
MmeI	TCCRAC	1 cut(s)	559
Mox20I	TGGCCA	2 cut(s)	231, 1242
MroXI	GAANNNNTTC	1 cut(s)	26
MscI	TGGCCA	2 cut(s)	231, 1242
MseI	TTAA	6 cut(s)	258, 437, 540, 1182, 1263, 1289
MslI	CAYNNNNRTG	3 cut(s)	162, 237, 950
Msp20I	TGGCCA	2 cut(s)	231, 1242
MspI	CCGG	1 cut(s)	51
MspR9I	CCNGG	2 cut(s)	52, 307
MunI	CAATTG	1 cut(s)	642
Mva1269I	GAATGC	1 cut(s)	655
MvaI	CCWGG	1 cut(s)	307
MwoI	GCNNNNNNNGC	4 cut(s)	122, 340, 596, 778
NciI	CCSGG	1 cut(s)	52
NcoI	CCATGG	2 cut(s)	232, 1237
NdeII	GATC	5 cut(s)	319, 682, 1104, 1140, 1315
NlaIII	CATG	9 cut(s)	59, 133, 164, 236, 320, 476, 487, 612, 1241
NlaIV	GGNNCC	3 cut(s)	49, 1189, 1328
NmuCI	GTSAC	5 cut(s)	132, 759, 1010, 1046, 1199
NspI	RCATGY	4 cut(s)	133, 476, 487, 612
PasI	CCCWGGG	1 cut(s)	306
PciI	ACATGT	1 cut(s)	483
PctI	GAATGC	1 cut(s)	655
PdmI	GAANNNNTTC	1 cut(s)	26
PfeI	GAWTC	2 cut(s)	1111, 1268
PflMI	CCANNNNNTGG	1 cut(s)	205
PkrI	GCNGC	1 cut(s)	265
PleI	GAGTC	2 cut(s)	766, 876
PpsI	GAGTC	2 cut(s)	766, 876
PscI	ACATGT	1 cut(s)	483
Psp6I	CCWGG	1 cut(s)	305
PspFI	CCCAGC	2 cut(s)	64, 590
PspGI	CCWGG	1 cut(s)	305
PspN4I	GGNNCC	3 cut(s)	49, 1189, 1328
PspPI	GGNCC	6 cut(s)	560, 615, 630, 989, 1057, 1326
RsaI	GTAC	2 cut(s)	191, 973
RsaNI	GTAC	2 cut(s)	190, 972
RseI	CAYNNNNRTG	3 cut(s)	162, 237, 950
SaqAI	TTAA	6 cut(s)	258, 437, 540, 1182, 1263, 1289
SatI	GCNGC	1 cut(s)	264
Sau3AI	GATC	5 cut(s)	319, 682, 1104, 1140, 1315
Sau96I	GGNCC	6 cut(s)	560, 615, 630, 989, 1057, 1326
SchI	GAGTC	2 cut(s)	767, 876
ScrFI	CCNGG	2 cut(s)	52, 307
SduI	GDGCHC	2 cut(s)	858, 1036
SfaNI	GCATC	3 cut(s)	82, 112, 544
SinI	GGWCC	5 cut(s)	560, 615, 630, 989, 1057
SmiMI	CAYNNNNRTG	3 cut(s)	162, 237, 950
SmlI	CTYRAG	1 cut(s)	38
SmoI	CTYRAG	1 cut(s)	38
SsiI	CCGC	2 cut(s)	263, 599
SspMI	CTAG	2 cut(s)	1004, 1130
StyD4I	CCNGG	2 cut(s)	50, 305
StyI	CCWWGG	3 cut(s)	218, 232, 1237
TaaI	ACNGT	4 cut(s)	396, 1010, 1195, 1249
TaiI	ACGT	2 cut(s)	288, 837
TaqI	TCGA	5 cut(s)	786, 848, 906, 920, 1164
TatI	WGTACW	1 cut(s)	189
TauI	GCSGC	1 cut(s)	266
TfiI	GAWTC	2 cut(s)	1111, 1268
Tru1I	TTAA	6 cut(s)	258, 437, 540, 1182, 1263, 1289
Tru9I	TTAA	6 cut(s)	258, 437, 540, 1182, 1263, 1289
TscAI	CASTG	6 cut(s)	37, 115, 199, 1015, 1067, 1200
TseFI	GTSAC	5 cut(s)	132, 759, 1010, 1046, 1199
Tsp45I	GTSAC	5 cut(s)	132, 759, 1010, 1046, 1199
TspDTI	ATGAA	3 cut(s)	72, 1098, 1284
TspGWI	ACGGA	1 cut(s)	438
TspRI	CASTG	6 cut(s)	37, 115, 199, 1015, 1067, 1200
Van91I	CCANNNNNTGG	1 cut(s)	205
VpaK11BI	GGWCC	5 cut(s)	560, 615, 630, 989, 1057
XapI	RAATTY	5 cut(s)	444, 789, 890, 1070, 1155
XceI	RCATGY	4 cut(s)	133, 476, 487, 612
XmnI	GAANNNNTTC	1 cut(s)	26
XspI	CTAG	2 cut(s)	1004, 1130

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.