RLG00000026649

alpha-L-fucosidase 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0003070
Physical Location & Seq
Forward (+)
4588255 .. 4590805
2551 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000026649

Sequence Viewer

Length: 1467 bp
ATGGCTAAACAGTGGCGCTCTCTGTGCATATTCACATTCCTCCAACTTTGCACATTCACCATCTCAAGGCTTGAGCAAGTCCCAACACCACCATTACCCATTCTACCACTTCCCACATATTCCCAGCTCAAATGGCAACAAAGGGAACTCATAATGTTCCTCCATTTCGGAGTGAACACCTTCACCGACTCCGAATGGGGAACCGGCCGTGAAAGCCCGGCCATTTTCAACCCGCCCGGCCTTGACGCCAACCAGTGGGTCAAAACAGCTTCGGATGCAGGCATATCACTAGTCATACTCACAGCAAAGCACCATGATGGGTTTTGCTTGTGGCCTTCAAAGTATACTGACCACTCCGTAGAGAGTAGTCCATGGAAAAATGGCCATGCTGATGTTGTTCAAGAGCTGGTCACTGCCGCCAAGACACGTGATGGCATTGACGTCGGGCTTTATCTGTCGCCGTGGGATAGGCATGACCGGAGATACGGTCAGGAGGTAGCATACAATCAGTACTACTTGGCCCAATTACAAGAACTTCTCAGCAGGTACGGGAGTGTAAGAGAAATTTGGTTCGATGGAAGTAAGGGTCCGAATGCACCAAACATGTCCTATTACTTTTCAGATTGGTTCTCCATGGTAAGGGAGTTACAGAGCTCTATTAACATATTCTCAGATGCTGGTCCGGATGTTAGATGGGTCGGTGATGAGCAAGGCTTTGCCGGAAGCACAAGCTGGTCCACCATTAATCGGAGTTCATTATCAATAGGGAATGCAAGCATTGAAGGTTATCTCAACACTGGTGATCCACAAGGAACAGACTGGTTGCCGCCAGAATGTGACGTTTCGATAAGAAATGGATGGTTTTGGCACAAATCAGAGTCGCCTAAGAAGCTAAGCAAGCTACTTGAAATTTACTACAACTCTGTAGGAAGAAATTGTGTGCTGTTACTCAATGTGCCTCCCAATTCTACCGGACTTATACCCGAAGCAGATGTGCAAAGACTCAGAGAATTGAGAGGTGCAATTGACACAATATTTTCTAGCAATTTAGCTGAGAAATGCTTCATCAAAGTGAGTAGCCAAAGAGGAGGCAAAGGAGGAGGTTTTGGACCTGAAAATGTGCTAGACAGTGACCATCTGTGGACATATTGGGCTCCAAAAGATGGTGACAAAGAGGAGCATTGGATTGAATTTAGAGGCAGAGATAAAGATAAAGGATTGAAATTCAATGTGATTAGGATTCAAGAGGCAATCGGGCTTGGCCAGAGAATCAAAAGGCATGAAATTTATGTGGATGGTAAGAGGGTTGCAAAAGGAACCACAGTGGGGTACAAGAGGCTTCACAGACTTGAAGGAGGAGTAGTCTATGGCCAAATTGTCAGAATTAGAATGAAAGACTCGAAAGGGATGCCTTTGATTTCTTCCATTGGTCTGCATTTTGATCCCTATTGGCACCCAAGTGGGTAG

Protein Analysis

489

Amino Acids

55.28

Weight (kDa)

7.66

Isoelectric Point (pI)

44.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Alpha_L_fucos PF01120 75 - 338 3e-34 Alpha-L-fucosidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 444
Acc36I ACCTGC 1 cut(s) 534
AccB1I GGYRCC 1 cut(s) 1452
AccB7I CCANNNNNTGG 2 cut(s) 255, 1163
AccI GTMKAC 1 cut(s) 344
AccIII TCCGGA 1 cut(s) 682
AciI CCGC 3 cut(s) 233, 417, 827
AclWI GGATC 2 cut(s) 797, 1436
AcoI YGGCCR 5 cut(s) 205, 219, 382, 1261, 1369
AcsI RAATTY 5 cut(s) 564, 909, 1190, 1223, 1284
AcvI CACGTG 1 cut(s) 428
AcyI GRCGYC 2 cut(s) 246, 441
AfaI GTAC 3 cut(s) 512, 548, 1331
AfiI CCNNNNNNNGG 6 cut(s) 66, 255, 639, 747, 1163, 1326
AflIII ACRYGT 2 cut(s) 425, 603
AhlI ACTAGT 1 cut(s) 289
AleI CACNNNNGTG 1 cut(s) 1458
AluBI AGCT 8 cut(s) 127, 269, 406, 654, 732, 892, 901, 1052
AluI AGCT 8 cut(s) 127, 269, 406, 654, 732, 892, 901, 1052
Alw21I GWGCWC 1 cut(s) 656
AlwI GGATC 2 cut(s) 797, 1436
AlwNI CAGNNNCTG 1 cut(s) 677
Aor13HI TCCGGA 1 cut(s) 682
AoxI GGCC 8 cut(s) 205, 219, 238, 332, 382, 519, 1261, 1369
ApoI RAATTY 5 cut(s) 564, 909, 1190, 1223, 1284
AseI ATTAAT 1 cut(s) 744
Asp700I GAANNNNTTC 2 cut(s) 179, 1061
AspLEI GCGC 1 cut(s) 18
AspS9I GGNCC 5 cut(s) 520, 587, 680, 735, 1109
AsuC2I CCSGG 2 cut(s) 218, 237
AsuHPI GGTGA 5 cut(s) 49, 175, 713, 812, 1178
AvaII GGWCC 4 cut(s) 587, 680, 735, 1109
BaeI ACNNNNGTAYC 2 cut(s) 538, 571
BalI TGGCCA 3 cut(s) 384, 1263, 1371
BanI GGYRCC 1 cut(s) 1452
BanII GRGCYC 2 cut(s) 656, 1156
BbrPI CACGTG 1 cut(s) 428
Bbv12I GWGCWC 1 cut(s) 656
BccI CCATC 9 cut(s) 68, 311, 425, 569, 687, 852, 1143, 1157, 1289
BceAI ACGGC 2 cut(s) 192, 445
BcgI CGANNNNNNTGC 4 cut(s) 424, 458, 1390, 1424
BcnI CCSGG 2 cut(s) 218, 237
BcuI ACTAGT 1 cut(s) 289
BfaI CTAG 3 cut(s) 290, 1041, 1124
BfmI CTRYAG 1 cut(s) 924
BfoI RGCGCY 1 cut(s) 19
BfuAI ACCTGC 1 cut(s) 534
BisI GCNGC 2 cut(s) 417, 827
BlpI GCTNAGC 1 cut(s) 893
BlsI GCNGC 2 cut(s) 418, 828
BmcAI AGTACT 1 cut(s) 512
Bme1390I CCNGG 2 cut(s) 218, 237
Bme18I GGWCC 4 cut(s) 587, 680, 735, 1109
BmgT120I GGNCC 5 cut(s) 520, 587, 680, 735, 1109
BmiI GGNNCC 5 cut(s) 202, 588, 1155, 1318, 1454
BmrFI CCNGG 2 cut(s) 218, 237
BmsI GCATC 3 cut(s) 265, 664, 1398
Bpu1102I GCTNAGC 1 cut(s) 893
BpuEI CTTGAG 2 cut(s) 49, 92
BpuMI CCSGG 2 cut(s) 218, 237
BsaAI YACGTR 1 cut(s) 428
BsaHI GRCGYC 2 cut(s) 246, 441
BsaJI CCNNGG 3 cut(s) 371, 461, 633
BsaWI WCCGGW 3 cut(s) 477, 682, 971
BsaXI ACNNNNNCTCC 4 cut(s) 472, 502, 1347, 1377
Bsc4I CCNNNNNNNGG 6 cut(s) 66, 255, 639, 747, 1163, 1326
Bse118I RCCGGY 1 cut(s) 203
Bse1I ACTGG 3 cut(s) 253, 802, 824
BseAI TCCGGA 1 cut(s) 682
BseDI CCNNGG 3 cut(s) 371, 461, 633
BseGI GGATG 5 cut(s) 280, 691, 863, 1300, 1413
BseLI CCNNNNNNNGG 6 cut(s) 66, 255, 639, 747, 1163, 1326
BseMII CTCAG 4 cut(s) 553, 684, 1018, 1044
BseNI ACTGG 3 cut(s) 253, 802, 824
BseRI GAGGAG 4 cut(s) 1101, 1113, 1190, 1371
BseX3I CGGCCG 1 cut(s) 205
BseYI CCCAGC 1 cut(s) 123
Bsh1285I CGRYCG 1 cut(s) 208
BshFI GGCC 8 cut(s) 207, 221, 240, 334, 384, 521, 1263, 1371
BshNI GGYRCC 1 cut(s) 1452
BsiEI CGRYCG 1 cut(s) 208
BsiHKAI GWGCWC 1 cut(s) 656
BsiSI CCGG 7 cut(s) 204, 218, 237, 478, 683, 720, 972
BslFI GGGAC 1 cut(s) 65
BslI CCNNNNNNNGG 6 cut(s) 66, 255, 639, 747, 1163, 1326
BsmFI GGGAC 1 cut(s) 65
BsmI GAATGC 2 cut(s) 598, 775
BsnI GGCC 8 cut(s) 207, 221, 240, 334, 384, 521, 1263, 1371
Bsp1286I GDGCHC 2 cut(s) 656, 1156
Bsp13I TCCGGA 1 cut(s) 682
Bsp143I GATC 2 cut(s) 802, 1441
Bsp1720I GCTNAGC 1 cut(s) 893
Bsp19I CCATGG 2 cut(s) 371, 633
BspACI CCGC 3 cut(s) 233, 417, 827
BspANI GGCC 8 cut(s) 207, 221, 240, 334, 384, 521, 1263, 1371
BspCNI CTCAG 4 cut(s) 552, 683, 1017, 1045
BspEI TCCGGA 1 cut(s) 682
BspLI GGNNCC 5 cut(s) 202, 588, 1155, 1318, 1454
BspMI ACCTGC 1 cut(s) 534
BspPI GGATC 2 cut(s) 797, 1436
BspT107I GGYRCC 1 cut(s) 1452
BsrFI RCCGGY 1 cut(s) 203
BsrI ACTGG 3 cut(s) 253, 802, 824
BssAI RCCGGY 1 cut(s) 203
BssECI CCNNGG 3 cut(s) 371, 461, 633
BssMI GATC 2 cut(s) 802, 1441
BssNAI GTATAC 1 cut(s) 345
BssNI GRCGYC 2 cut(s) 246, 441
BssT1I CCWWGG 2 cut(s) 371, 633
Bst1107I GTATAC 1 cut(s) 345
Bst4CI ACNGT 4 cut(s) 12, 488, 1130, 1324
BstACI GRCGYC 2 cut(s) 246, 441
BstBAI YACGTR 1 cut(s) 428
BstC8I GCNNGC 3 cut(s) 280, 775, 899
BstDEI CTNAG 6 cut(s) 539, 670, 885, 893, 1004, 1053
BstDSI CCRYGG 3 cut(s) 371, 461, 633
BstF5I GGATG 5 cut(s) 280, 691, 863, 1300, 1413
BstH2I RGCGCY 1 cut(s) 19
BstHHI GCGC 1 cut(s) 18
BstKTI GATC 2 cut(s) 805, 1444
BstMBI GATC 2 cut(s) 802, 1441
BstMCI CGRYCG 1 cut(s) 208
BstMWI GCNNNNNNNGC 6 cut(s) 24, 133, 213, 275, 889, 898
BstNSI RCATGY 1 cut(s) 607
BstSCI CCNGG 2 cut(s) 216, 235
BstSFI CTRYAG 1 cut(s) 924
BstZ17I GTATAC 1 cut(s) 345
BstZI CGGCCG 1 cut(s) 205
BsuRI GGCC 8 cut(s) 207, 221, 240, 334, 384, 521, 1263, 1371
BtgI CCRYGG 3 cut(s) 371, 461, 633
BtsCI GGATG 5 cut(s) 280, 691, 863, 1300, 1413
BtsI GCAGTG 1 cut(s) 411
BtsIMutI CAGTG 6 cut(s) 17, 260, 411, 795, 1135, 1329
BveI ACCTGC 1 cut(s) 534
Cac8I GCNNGC 3 cut(s) 280, 775, 899
CaiI CAGNNNCTG 1 cut(s) 677
CfoI GCGC 1 cut(s) 18
Cfr10I RCCGGY 1 cut(s) 203
Cfr13I GGNCC 5 cut(s) 520, 587, 680, 735, 1109
CseI GACGC 1 cut(s) 254
Csp6I GTAC 3 cut(s) 511, 547, 1330
CviAII CATG 7 cut(s) 314, 372, 386, 473, 604, 634, 1280
CviQI GTAC 3 cut(s) 511, 547, 1330
DdeI CTNAG 6 cut(s) 539, 670, 885, 893, 1004, 1053
DpnI GATC 2 cut(s) 804, 1443
DpnII GATC 2 cut(s) 802, 1441
EaeI YGGCCR 5 cut(s) 205, 219, 382, 1261, 1369
EagI CGGCCG 1 cut(s) 205
Ecl136II GAGCTC 1 cut(s) 654
EclXI CGGCCG 1 cut(s) 205
Eco130I CCWWGG 2 cut(s) 371, 633
Eco24I GRGCYC 2 cut(s) 656, 1156
Eco47I GGWCC 4 cut(s) 587, 680, 735, 1109
Eco52I CGGCCG 1 cut(s) 205
Eco53kI GAGCTC 1 cut(s) 654
Eco72I CACGTG 1 cut(s) 428
EcoICRI GAGCTC 1 cut(s) 654
EcoT14I CCWWGG 2 cut(s) 371, 633
EcoT38I GRGCYC 2 cut(s) 656, 1156
ErhI CCWWGG 2 cut(s) 371, 633
FaeI CATG 7 cut(s) 317, 375, 389, 476, 607, 637, 1283
FaqI GGGAC 1 cut(s) 65
FatI CATG 7 cut(s) 313, 371, 385, 472, 603, 633, 1279
FauI CCCGC 1 cut(s) 240
FblI GTMKAC 1 cut(s) 344
Fnu4HI GCNGC 2 cut(s) 417, 827
FokI GGATG 5 cut(s) 287, 698, 870, 1307, 1420
FriOI GRGCYC 2 cut(s) 656, 1156
Fsp4HI GCNGC 2 cut(s) 417, 827
FspBI CTAG 3 cut(s) 290, 1041, 1124
GlaI GCGC 1 cut(s) 17
GluI GCNGC 2 cut(s) 417, 827
GsaI CCCAGC 1 cut(s) 127
HaeII RGCGCY 1 cut(s) 19
HaeIII GGCC 8 cut(s) 207, 221, 240, 334, 384, 521, 1263, 1371
HapII CCGG 7 cut(s) 204, 218, 237, 478, 683, 720, 972
HgaI GACGC 1 cut(s) 254
HhaI GCGC 1 cut(s) 18
Hin1I GRCGYC 2 cut(s) 246, 441
Hin1II CATG 7 cut(s) 317, 375, 389, 476, 607, 637, 1283
Hin6I GCGC 1 cut(s) 16
HinP1I GCGC 1 cut(s) 16
HinfI GANTC 6 cut(s) 188, 878, 1002, 1240, 1269, 1397
HpaII CCGG 7 cut(s) 204, 218, 237, 478, 683, 720, 972
HphI GGTGA 5 cut(s) 49, 175, 713, 812, 1178
Hpy166II GTNNAC 4 cut(s) 175, 345, 738, 1143
Hpy188III TCNNGA 4 cut(s) 401, 491, 683, 1244
Hpy8I GTNNAC 4 cut(s) 175, 345, 738, 1143
Hpy99I CGWCG 1 cut(s) 446
HpyAV CCTTC 4 cut(s) 190, 345, 776, 1346
HpyCH4III ACNGT 4 cut(s) 12, 488, 1130, 1324
HpyCH4IV ACGT 3 cut(s) 427, 441, 840
HpyCH4V TGCA 9 cut(s) 27, 51, 278, 596, 773, 997, 1022, 1310, 1435
HpyF10VI GCNNNNNNNGC 6 cut(s) 24, 133, 213, 275, 889, 898
HpyF3I CTNAG 6 cut(s) 539, 670, 885, 893, 1004, 1053
HpySE526I ACGT 3 cut(s) 427, 441, 840
Hsp92I GRCGYC 2 cut(s) 246, 441
Hsp92II CATG 7 cut(s) 317, 375, 389, 476, 607, 637, 1283
HspAI GCGC 1 cut(s) 16
Kpn2I TCCGGA 1 cut(s) 682
Kzo9I GATC 2 cut(s) 802, 1441
LmnI GCTCC 2 cut(s) 1159, 1177
LweI GCATC 3 cut(s) 265, 664, 1398
MaeI CTAG 3 cut(s) 290, 1041, 1124
MaeII ACGT 3 cut(s) 427, 441, 840
MaeIII GTNAC 6 cut(s) 409, 645, 836, 945, 1130, 1166
MalI GATC 2 cut(s) 804, 1443
MboI GATC 2 cut(s) 802, 1441
MboII GAAGA 2 cut(s) 942, 1413
MfeI CAATTG 1 cut(s) 1023
MhlI GDGCHC 2 cut(s) 656, 1156
MlsI TGGCCA 3 cut(s) 384, 1263, 1371
MluNI TGGCCA 3 cut(s) 384, 1263, 1371
MlyI GAGTC 4 cut(s) 182, 887, 996, 1391
MmeI TCCRAC 1 cut(s) 67
Mox20I TGGCCA 3 cut(s) 384, 1263, 1371
MroI TCCGGA 1 cut(s) 682
MroXI GAANNNNTTC 2 cut(s) 179, 1061
MscI TGGCCA 3 cut(s) 384, 1263, 1371
MseI TTAA 2 cut(s) 660, 744
MslI CAYNNNNRTG 4 cut(s) 315, 390, 1070, 1458
Msp20I TGGCCA 3 cut(s) 384, 1263, 1371
MspI CCGG 7 cut(s) 204, 218, 237, 478, 683, 720, 972
MspR9I CCNGG 2 cut(s) 218, 237
MunI CAATTG 1 cut(s) 1023
Mva1269I GAATGC 2 cut(s) 598, 775
MwoI GCNNNNNNNGC 6 cut(s) 24, 133, 213, 275, 889, 898
NciI CCSGG 2 cut(s) 218, 237
NcoI CCATGG 2 cut(s) 371, 633
NdeII GATC 2 cut(s) 802, 1441
NlaIII CATG 7 cut(s) 317, 375, 389, 476, 607, 637, 1283
NlaIV GGNNCC 5 cut(s) 202, 588, 1155, 1318, 1454
NmuCI GTSAC 4 cut(s) 409, 836, 1130, 1166
NspI RCATGY 1 cut(s) 607
OliI CACNNNNGTG 1 cut(s) 1458
PciI ACATGT 1 cut(s) 603
PctI GAATGC 2 cut(s) 598, 775
PdmI GAANNNNTTC 2 cut(s) 179, 1061
PfeI GAWTC 2 cut(s) 1240, 1269
PflMI CCANNNNNTGG 2 cut(s) 255, 1163
PkrI GCNGC 2 cut(s) 418, 828
PleI GAGTC 4 cut(s) 182, 886, 996, 1391
PmaCI CACGTG 1 cut(s) 428
PmlI CACGTG 1 cut(s) 428
PpsI GAGTC 4 cut(s) 182, 886, 996, 1391
Ppu21I YACGTR 1 cut(s) 428
PscI ACATGT 1 cut(s) 603
PshBI ATTAAT 1 cut(s) 744
Psp124BI GAGCTC 1 cut(s) 656
PspCI CACGTG 1 cut(s) 428
PspFI CCCAGC 1 cut(s) 123
PspN4I GGNNCC 5 cut(s) 202, 588, 1155, 1318, 1454
PspPI GGNCC 5 cut(s) 520, 587, 680, 735, 1109
PstNI CAGNNNCTG 1 cut(s) 677
RsaI GTAC 3 cut(s) 512, 548, 1331
RsaNI GTAC 3 cut(s) 511, 547, 1330
RseI CAYNNNNRTG 4 cut(s) 315, 390, 1070, 1458
SacI GAGCTC 1 cut(s) 656
SaqAI TTAA 2 cut(s) 660, 744
SatI GCNGC 2 cut(s) 417, 827
Sau3AI GATC 2 cut(s) 802, 1441
Sau96I GGNCC 5 cut(s) 520, 587, 680, 735, 1109
ScaI AGTACT 1 cut(s) 512
SchI GAGTC 4 cut(s) 182, 887, 996, 1391
ScrFI CCNGG 2 cut(s) 218, 237
SduI GDGCHC 2 cut(s) 656, 1156
SfaNI GCATC 3 cut(s) 265, 664, 1398
SfcI CTRYAG 1 cut(s) 924
SinI GGWCC 4 cut(s) 587, 680, 735, 1109
SmiMI CAYNNNNRTG 4 cut(s) 315, 390, 1070, 1458
SmlI CTYRAG 2 cut(s) 64, 71
SmoI CTYRAG 2 cut(s) 64, 71
SpeI ACTAGT 1 cut(s) 289
SsiI CCGC 3 cut(s) 233, 417, 827
SspI AATATT 1 cut(s) 1035
SspMI CTAG 3 cut(s) 290, 1041, 1124
SstI GAGCTC 1 cut(s) 656
StyD4I CCNGG 2 cut(s) 216, 235
StyI CCWWGG 2 cut(s) 371, 633
TaaI ACNGT 4 cut(s) 12, 488, 1130, 1324
TaiI ACGT 3 cut(s) 430, 444, 843
TaqI TCGA 3 cut(s) 573, 845, 1400
TatI WGTACW 1 cut(s) 510
TauI GCSGC 2 cut(s) 419, 829
TfiI GAWTC 2 cut(s) 1240, 1269
Tru1I TTAA 2 cut(s) 660, 744
Tru9I TTAA 2 cut(s) 660, 744
TscAI CASTG 6 cut(s) 17, 260, 418, 802, 1135, 1329
TseFI GTSAC 4 cut(s) 409, 836, 1130, 1166
Tsp45I GTSAC 4 cut(s) 409, 836, 1130, 1166
TspDTI ATGAA 4 cut(s) 744, 1054, 1296, 1406
TspGWI ACGGA 1 cut(s) 346
TspRI CASTG 6 cut(s) 17, 260, 418, 802, 1135, 1329
Van91I CCANNNNNTGG 2 cut(s) 255, 1163
VpaK11BI GGWCC 4 cut(s) 587, 680, 735, 1109
VspI ATTAAT 1 cut(s) 744
XapI RAATTY 5 cut(s) 564, 909, 1190, 1223, 1284
XceI RCATGY 1 cut(s) 607
XmiI GTMKAC 1 cut(s) 344
XmnI GAANNNNTTC 2 cut(s) 179, 1061
XspI CTAG 3 cut(s) 290, 1041, 1124
ZraI GACGTC 1 cut(s) 442
ZrmI AGTACT 1 cut(s) 512
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.