Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0003070

Physical Location & Seq

Genomic Coordinates Reverse (-)

21119655 .. 21121753

Gene Structure 2099 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g28490.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1464 bp

ATGGGTAAACAATGGTGCTCTTTGTTCATAATCACATTCTTTGAACTATGCACATTTACCTTCTCTAGGCTTGAGCAAGTAACACCACCCCCCTTGCCAATTCTACCACTTCCTACATATCACCAGCTGAAATGGCAACAAAGGGAGATAATAATGTTCCTCCATTTTGGAGTGAACACATTCACTGGCCTTGAGCGTGGCACTGGGAATGAAAATCCAGCCATATTCAACCCGGTTGCACTTGATGCGAGCCAATGGGTTAGTGTAGCAGAAGATGCAGGGATATCACTAATGATACTTACTGCAAAGCACCATGATGGGTTTTGCTTGTGGCCTTCTAAGTACACTGACCATACTGTAAAAAAAAGTCCTTGGAAAAATGGCCATGGTGATGTTGTTCAGGAACTGGTTGATGCGTCTAAGCCCCGTGGGGTTGATGTTGGGCTGTATCTCTCACCCTGGGATAGACATGATCACAGATATGGGATGGAGAAACCATATAACGAATACTACTTGGCTCAGTTACAAGAGCTACTCACTAGATATGGGAGTTTAAGAGAAATTTGGTTTGACGGATTTAAAGGTGAAGATGCACCAAACATGTCCTACTTTTTTACAGATTGGTTCTCTATGGTGAAGGAGTTGCAGAGTTCCATTAACATATTTTCTGATGCTGGTCCGGATGTTAGATGGGTTGGAAATGAGGATGGGTTTGCCGGAGAATCATGCTGGTCCACCATCAATCGGACCTCGTTATCAATTGGGAATGCAAGCATTGAGCACTATCTCAACAGAGGTGATCCGAAAGGGACAGATTGGTTGCCAGCAGAGAGCGATGTTTCAATCCGAAAAGGATGGTTTTGGCATAGTTCAGAGTCACCTAAGAAGCTAAGCCAGCTACTCAAAATTTACTATAACTCAGTAGGACGAAATTCTGTGTTACTACTCAACGTGCCTCCTAATTCAACAGGGCTCATATCAGAAGTAGATGTTGAAAGACTCCGAGAATTCAGAACAGCAATCGACACCATATTTTCGACAAATGTAGCAGAGAAATGCTCCATCAAGGTGAGTAGCCAAAGAGGGGGTATTGGAGGAGGTTTTGGACCTGAAAATGTGCTAGACAGTGACCATTTGTGGACATATTGGGCTCCGAGGGATGGTGACAAAGATGATCACTGGATTGAATTTAGAGCAGATGAAGGGATGAGGTTCAATGCGATCAGGATTCAAGAGGCAATTGGTCTTGGTCAGAGGATCAAACGGCACAAAATTTGTGTCGATGGTAAAGTAGTAGCTAATGGAACCACAGTGGGTTACAAGAGACTTCACAGACTTAATAATGGAGTAGTCCATGGCCAAACTGTAAGAATCAGAATTGAAGAATCGAGGGGTAATCTTCCTTTGATTTCATCCATTGGTCTGCATTTTGATCCCTATTGGCACCCAGAGAAAGGTGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004560 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006516 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009100 GO:0009987 GO:0015928 GO:0016787 GO:0016798 GO:0019538 GO:0030163 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:1901135 GO:1901136 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00511 map00511

Pfam Domains

Protein Families

Alpha_L_fucos F5_F8_type_C

Protein Analysis

488

Amino Acids

55.37

Weight (kDa)

6.29

Isoelectric Point (pI)

35.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Alpha_L_fucos	PF01120	74 - 336	2.2e-34	Alpha-L-fucosidase
F5_F8_type_C	PF00754	355 - 463	4.3e-06	F5/8 type C domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003070)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g28480 FvH4_7g28490
malus_domestica	MD01G1188500.v1.1 MD01G1188600.v1.1
prunus_persica	Prupe.2G285300_v2.0.a1
pyrus_communis	pycom01g20020 pycom01g20030
rosa_chinensis	RchiOBHm_Chr1g0375771 RchiOBHm_Chr1g0375821 RchiOBHm_Chr1g0375841 RchiOBHm_Chr1g0375871
rosa_laevigata	RLG00000026648 RLG00000026649 RLG00000026652 RLG00000026654
rosa_multiflora	Rmu_sc0000487.1_g000052 Rmu_sc0001943.1_g000004 Rmu_sc0001943.1_g000006 Rmu_sc0001943.1_g000007
rosa_roxburghii	Rroxscaffold_4G00282570 Rroxscaffold_4G00282610 Rroxscaffold_4G00282640
rosa_rugosa	Rorug01G0391800 Rorug01G0391900 Rorug01G0392000
rosa_samantha	Rh1AG403600 Rh1AG403700 Rh1AG403800 Rh1BG367200 Rh1BG367300 Rh1CG379800 Rh1CG380000 Rh1CG380100 Rh1DG397200 Rh1DG397300
rosa_wichuraiana	Rw0G000980 Rw0G023580 Rw4G005900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1443
AccIII	TCCGGA	1 cut(s)	679
AclWI	GGATC	3 cut(s)	794, 1265, 1427
AcoI	YGGCCR	2 cut(s)	382, 1357
AcsI	RAATTY	6 cut(s)	561, 906, 931, 1007, 1187, 1272
AfaI	GTAC	1 cut(s)	344
AfiI	CCNNNNNNNGG	5 cut(s)	66, 744, 1084, 1160, 1454
AflIII	ACRYGT	1 cut(s)	600
AgsI	TTSAA	9 cut(s)	44, 229, 843, 966, 995, 1187, 1216, 1232, 1382
AjnI	CCWGG	1 cut(s)	458
AluBI	AGCT	5 cut(s)	127, 532, 889, 898, 1298
AluI	AGCT	5 cut(s)	127, 532, 889, 898, 1298
Alw21I	GWGCWC	2 cut(s)	20, 783
Alw26I	GTCTC	1 cut(s)	1318
AlwI	GGATC	3 cut(s)	794, 1265, 1427
AlwNI	CAGNNNCTG	1 cut(s)	406
Aor13HI	TCCGGA	1 cut(s)	679
AoxI	GGCC	4 cut(s)	187, 332, 382, 1357
ApoI	RAATTY	6 cut(s)	561, 906, 931, 1007, 1187, 1272
ArsI	GACNNNNNNTTYG	2 cut(s)	1263, 1295
Asp700I	GAANNNNTTC	1 cut(s)	179
AspS9I	GGNCC	4 cut(s)	677, 732, 747, 1106
AsuC2I	CCSGG	1 cut(s)	233
AsuHPI	GGTGA	9 cut(s)	113, 401, 447, 596, 646, 809, 870, 1081, 1175
AvaII	GGWCC	4 cut(s)	677, 732, 747, 1106
BalI	TGGCCA	2 cut(s)	384, 1359
BanI	GGYRCC	1 cut(s)	1443
BanII	GRGCYC	2 cut(s)	975, 1153
Bbv12I	GWGCWC	2 cut(s)	20, 783
BccI	CCATC	9 cut(s)	311, 481, 684, 701, 746, 849, 1070, 1154, 1277
BceAI	ACGGC	1 cut(s)	1280
BciT130I	CCWGG	1 cut(s)	460
BclI	TGATCA	2 cut(s)	472, 1174
BcnI	CCSGG	1 cut(s)	233
BcoDI	GTCTC	1 cut(s)	1318
BfaI	CTAG	3 cut(s)	66, 540, 1121
BlpI	GCTNAGC	1 cut(s)	890
Bme1390I	CCNGG	2 cut(s)	233, 460
Bme18I	GGWCC	4 cut(s)	677, 732, 747, 1106
BmgT120I	GGNCC	4 cut(s)	677, 732, 747, 1106
BmiI	GGNNCC	3 cut(s)	1152, 1306, 1445
BmrFI	CCNGG	2 cut(s)	233, 460
BmrI	ACTGGG	1 cut(s)	213
BmsI	GCATC	5 cut(s)	235, 265, 403, 580, 661
BmuI	ACTGGG	1 cut(s)	213
BplI	GAGNNNNNCTC	2 cut(s)	1043, 1075
Bpu1102I	GCTNAGC	1 cut(s)	890
BpuEI	CTTGAG	2 cut(s)	92, 212
BpuMI	CCSGG	1 cut(s)	233
BsaJI	CCNNGG	7 cut(s)	371, 385, 427, 458, 459, 1154, 1354
BsaWI	WCCGGW	1 cut(s)	679
Bsc4I	CCNNNNNNNGG	5 cut(s)	66, 744, 1084, 1160, 1454
Bse1I	ACTGG	4 cut(s)	190, 208, 411, 1184
BseAI	TCCGGA	1 cut(s)	679
BseBI	CCWGG	1 cut(s)	460
BseDI	CCNNGG	7 cut(s)	371, 385, 427, 458, 459, 1154, 1354
BseGI	GGATG	7 cut(s)	492, 688, 712, 860, 1165, 1212, 1412
BseLI	CCNNNNNNNGG	5 cut(s)	66, 744, 1084, 1160, 1454
BseMII	CTCAG	2 cut(s)	533, 933
BseNI	ACTGG	4 cut(s)	190, 208, 411, 1184
BseRI	GAGGAG	1 cut(s)	1110
BshFI	GGCC	4 cut(s)	189, 334, 384, 1359
BshNI	GGYRCC	1 cut(s)	1443
BsiHKAI	GWGCWC	2 cut(s)	20, 783
BsiSI	CCGG	3 cut(s)	233, 680, 717
BslFI	GGGAC	1 cut(s)	823
BslI	CCNNNNNNNGG	5 cut(s)	66, 744, 1084, 1160, 1454
BsmAI	GTCTC	1 cut(s)	1318
BsmFI	GGGAC	1 cut(s)	823
BsmI	GAATGC	1 cut(s)	772
BsnI	GGCC	4 cut(s)	189, 334, 384, 1359
Bsp1286I	GDGCHC	4 cut(s)	20, 783, 975, 1153
Bsp13I	TCCGGA	1 cut(s)	679
Bsp143I	GATC	6 cut(s)	472, 799, 1174, 1221, 1257, 1432
Bsp1720I	GCTNAGC	1 cut(s)	890
Bsp19I	CCATGG	2 cut(s)	385, 1354
BspANI	GGCC	4 cut(s)	189, 334, 384, 1359
BspCNI	CTCAG	2 cut(s)	532, 932
BspEI	TCCGGA	1 cut(s)	679
BspLI	GGNNCC	3 cut(s)	1152, 1306, 1445
BspPI	GGATC	3 cut(s)	794, 1265, 1427
BspT107I	GGYRCC	1 cut(s)	1443
BsrI	ACTGG	4 cut(s)	190, 208, 411, 1184
BssECI	CCNNGG	7 cut(s)	371, 385, 427, 458, 459, 1154, 1354
BssMI	GATC	6 cut(s)	472, 799, 1174, 1221, 1257, 1432
BssT1I	CCWWGG	3 cut(s)	371, 385, 1354
Bst2UI	CCWGG	1 cut(s)	460
Bst4CI	ACNGT	4 cut(s)	358, 1127, 1312, 1366
BstAPI	GCANNNNNTGC	2 cut(s)	245, 275
BstC8I	GCNNGC	4 cut(s)	250, 772, 825, 896
BstDEI	CTNAG	6 cut(s)	339, 420, 519, 882, 890, 919
BstDSI	CCRYGG	3 cut(s)	385, 427, 1354
BstENI	CCTNNNNNAGG	1 cut(s)	64
BstF5I	GGATG	7 cut(s)	492, 688, 712, 860, 1165, 1212, 1412
BstKTI	GATC	6 cut(s)	475, 802, 1177, 1224, 1260, 1435
BstMAI	GTCTC	1 cut(s)	1318
BstMBI	GATC	6 cut(s)	472, 799, 1174, 1221, 1257, 1432
BstMWI	GCNNNNNNNGC	4 cut(s)	133, 245, 275, 895
BstNI	CCWGG	1 cut(s)	460
BstNSI	RCATGY	1 cut(s)	604
BstSCI	CCNGG	2 cut(s)	231, 458
BsuRI	GGCC	4 cut(s)	189, 334, 384, 1359
BtgI	CCRYGG	3 cut(s)	385, 427, 1354
BtgZI	GCGATG	1 cut(s)	849
BtsCI	GGATG	7 cut(s)	492, 688, 712, 860, 1165, 1212, 1412
BtsIMutI	CAGTG	6 cut(s)	183, 201, 345, 1132, 1177, 1317
Cac8I	GCNNGC	4 cut(s)	250, 772, 825, 896
CaiI	CAGNNNCTG	1 cut(s)	406
Cfr13I	GGNCC	4 cut(s)	677, 732, 747, 1106
CseI	GACGC	1 cut(s)	405
Csp6I	GTAC	1 cut(s)	343
CspCI	CAANNNNNGTGG	2 cut(s)	75, 110
CviAII	CATG	6 cut(s)	314, 386, 470, 601, 726, 1355
CviQI	GTAC	1 cut(s)	343
DdeI	CTNAG	6 cut(s)	339, 420, 519, 882, 890, 919
DpnI	GATC	6 cut(s)	474, 801, 1176, 1223, 1259, 1434
DpnII	GATC	6 cut(s)	472, 799, 1174, 1221, 1257, 1432
DraI	TTTAAA	1 cut(s)	580
EaeI	YGGCCR	2 cut(s)	382, 1357
Eco130I	CCWWGG	3 cut(s)	371, 385, 1354
Eco24I	GRGCYC	2 cut(s)	975, 1153
Eco32I	GATATC	1 cut(s)	285
Eco47I	GGWCC	4 cut(s)	677, 732, 747, 1106
EcoNI	CCTNNNNNAGG	1 cut(s)	64
EcoRI	GAATTC	1 cut(s)	1007
EcoRII	CCWGG	1 cut(s)	458
EcoRV	GATATC	1 cut(s)	285
EcoT14I	CCWWGG	3 cut(s)	371, 385, 1354
EcoT38I	GRGCYC	2 cut(s)	975, 1153
ErhI	CCWWGG	3 cut(s)	371, 385, 1354
FaeI	CATG	6 cut(s)	317, 389, 473, 604, 729, 1358
FaqI	GGGAC	1 cut(s)	823
FatI	CATG	6 cut(s)	313, 385, 469, 600, 725, 1354
FbaI	TGATCA	2 cut(s)	472, 1174
FokI	GGATG	7 cut(s)	499, 695, 719, 867, 1172, 1219, 1399
FriOI	GRGCYC	2 cut(s)	975, 1153
FspBI	CTAG	3 cut(s)	66, 540, 1121
HaeIII	GGCC	4 cut(s)	189, 334, 384, 1359
HapII	CCGG	3 cut(s)	233, 680, 717
HgaI	GACGC	1 cut(s)	405
Hin1II	CATG	6 cut(s)	317, 389, 473, 604, 729, 1358
HinfI	GANTC	6 cut(s)	722, 875, 999, 1228, 1371, 1385
HpaII	CCGG	3 cut(s)	233, 680, 717
HphI	GGTGA	9 cut(s)	113, 401, 447, 596, 646, 809, 870, 1081, 1175
Hpy166II	GTNNAC	5 cut(s)	8, 175, 345, 735, 1140
Hpy188III	TCNNGA	4 cut(s)	401, 680, 1225, 1232
Hpy8I	GTNNAC	5 cut(s)	8, 175, 345, 735, 1140
HpyAV	CCTTC	4 cut(s)	70, 345, 631, 1196
HpyCH4III	ACNGT	4 cut(s)	358, 1127, 1312, 1366
HpyCH4IV	ACGT	1 cut(s)	951
HpyCH4V	TGCA	8 cut(s)	51, 239, 278, 305, 593, 646, 770, 1426
HpyF10VI	GCNNNNNNNGC	4 cut(s)	133, 245, 275, 895
HpyF3I	CTNAG	6 cut(s)	339, 420, 519, 882, 890, 919
HpySE526I	ACGT	1 cut(s)	951
Hsp92II	CATG	6 cut(s)	317, 389, 473, 604, 729, 1358
Kpn2I	TCCGGA	1 cut(s)	679
Ksp22I	TGATCA	2 cut(s)	472, 1174
Kzo9I	GATC	6 cut(s)	472, 799, 1174, 1221, 1257, 1432
LmnI	GCTCC	2 cut(s)	1064, 1156
LweI	GCATC	5 cut(s)	235, 265, 403, 580, 661
MaeI	CTAG	3 cut(s)	66, 540, 1121
MaeII	ACGT	1 cut(s)	951
MaeIII	GTNAC	7 cut(s)	79, 522, 876, 939, 1127, 1163, 1316
MalI	GATC	6 cut(s)	474, 801, 1176, 1223, 1259, 1434
MboI	GATC	6 cut(s)	472, 799, 1174, 1221, 1257, 1432
MboII	GAAGA	4 cut(s)	284, 599, 1391, 1394
MfeI	CAATTG	2 cut(s)	759, 1239
MhlI	GDGCHC	4 cut(s)	20, 783, 975, 1153
MlsI	TGGCCA	2 cut(s)	384, 1359
MluNI	TGGCCA	2 cut(s)	384, 1359
MlyI	GAGTC	2 cut(s)	884, 993
MmeI	TCCRAC	1 cut(s)	676
Mox20I	TGGCCA	2 cut(s)	384, 1359
MroI	TCCGGA	1 cut(s)	679
MroXI	GAANNNNTTC	1 cut(s)	179
MscI	TGGCCA	2 cut(s)	384, 1359
MseI	TTAA	4 cut(s)	554, 579, 657, 1338
MslI	CAYNNNNRTG	4 cut(s)	315, 390, 480, 1067
Msp20I	TGGCCA	2 cut(s)	384, 1359
MspA1I	CMGCKG	1 cut(s)	127
MspI	CCGG	3 cut(s)	233, 680, 717
MspR9I	CCNGG	2 cut(s)	233, 460
MunI	CAATTG	2 cut(s)	759, 1239
Mva1269I	GAATGC	1 cut(s)	772
MvaI	CCWGG	1 cut(s)	460
MwoI	GCNNNNNNNGC	4 cut(s)	133, 245, 275, 895
NciI	CCSGG	1 cut(s)	233
NcoI	CCATGG	2 cut(s)	385, 1354
NdeII	GATC	6 cut(s)	472, 799, 1174, 1221, 1257, 1432
NlaIII	CATG	6 cut(s)	317, 389, 473, 604, 729, 1358
NlaIV	GGNNCC	3 cut(s)	1152, 1306, 1445
NmuCI	GTSAC	3 cut(s)	876, 1127, 1163
NspI	RCATGY	1 cut(s)	604
PasI	CCCWGGG	1 cut(s)	459
PciI	ACATGT	1 cut(s)	600
PctI	GAATGC	1 cut(s)	772
PdmI	GAANNNNTTC	1 cut(s)	179
PfeI	GAWTC	4 cut(s)	722, 1228, 1371, 1385
PleI	GAGTC	2 cut(s)	883, 993
PpsI	GAGTC	2 cut(s)	883, 993
PscI	ACATGT	1 cut(s)	600
Psp6I	CCWGG	1 cut(s)	458
PspGI	CCWGG	1 cut(s)	458
PspN4I	GGNNCC	3 cut(s)	1152, 1306, 1445
PspPI	GGNCC	4 cut(s)	677, 732, 747, 1106
PstNI	CAGNNNCTG	1 cut(s)	406
PvuII	CAGCTG	1 cut(s)	127
RsaI	GTAC	1 cut(s)	344
RsaNI	GTAC	1 cut(s)	343
RseI	CAYNNNNRTG	4 cut(s)	315, 390, 480, 1067
SaqAI	TTAA	4 cut(s)	554, 579, 657, 1338
Sau3AI	GATC	6 cut(s)	472, 799, 1174, 1221, 1257, 1432
Sau96I	GGNCC	4 cut(s)	677, 732, 747, 1106
SchI	GAGTC	2 cut(s)	884, 993
ScrFI	CCNGG	2 cut(s)	233, 460
SduI	GDGCHC	4 cut(s)	20, 783, 975, 1153
SfaNI	GCATC	5 cut(s)	235, 265, 403, 580, 661
SinI	GGWCC	4 cut(s)	677, 732, 747, 1106
SmiMI	CAYNNNNRTG	4 cut(s)	315, 390, 480, 1067
SmlI	CTYRAG	2 cut(s)	71, 191
SmoI	CTYRAG	2 cut(s)	71, 191
SspMI	CTAG	3 cut(s)	66, 540, 1121
StyD4I	CCNGG	2 cut(s)	231, 458
StyI	CCWWGG	3 cut(s)	371, 385, 1354
TaaI	ACNGT	4 cut(s)	358, 1127, 1312, 1366
TaiI	ACGT	1 cut(s)	954
TaqI	TCGA	4 cut(s)	1023, 1037, 1281, 1388
TatI	WGTACW	1 cut(s)	342
TfiI	GAWTC	4 cut(s)	722, 1228, 1371, 1385
Tru1I	TTAA	4 cut(s)	554, 579, 657, 1338
Tru9I	TTAA	4 cut(s)	554, 579, 657, 1338
TscAI	CASTG	6 cut(s)	190, 208, 352, 1132, 1184, 1317
TseFI	GTSAC	3 cut(s)	876, 1127, 1163
Tsp45I	GTSAC	3 cut(s)	876, 1127, 1163
TspDTI	ATGAA	4 cut(s)	16, 225, 1215, 1401
TspGWI	ACGGA	1 cut(s)	588
TspRI	CASTG	6 cut(s)	190, 208, 352, 1132, 1184, 1317
VpaK11BI	GGWCC	4 cut(s)	677, 732, 747, 1106
XagI	CCTNNNNNAGG	1 cut(s)	64
XapI	RAATTY	6 cut(s)	561, 906, 931, 1007, 1187, 1272
XceI	RCATGY	1 cut(s)	604
XmnI	GAANNNNTTC	1 cut(s)	179
XspI	CTAG	3 cut(s)	66, 540, 1121

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.