Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0003070

Physical Location & Seq

Genomic Coordinates Forward (+)

4670566 .. 4671155

Gene Structure 590 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00282610.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 279 bp

ATGGTGAGTGAGTTACAGAGCTCCATTAACATATTCTCGGATGCTGATCCGGTTGTTAGATGGGTCGGCGATGAGCAAGGCTTCGCTGGAAGCACAAGCTGGTCCACCATTAATCGGAGTTCATTATCAATTGAGAATGCAAGCATTGAAGGTTATCTCAACACTGATGATCCACAAGGAACAGACTGGTTGCCGCCAGAATGTGACGTTTCGATAAGAAATGGATGGTTTAGGCACAAATCAGAGTCGCCTAAGAAGCTAAGCAAGCTACTTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004560 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006516 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009100 GO:0009987 GO:0015928 GO:0016787 GO:0016798 GO:0019538 GO:0030163 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:1901135 GO:1901136 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00511 map00511

Pfam Domains

Protein Families

Alpha_L_fucos F5_F8_type_C

Protein Analysis

92

Amino Acids

10.25

Weight (kDa)

4.56

Isoelectric Point (pI)

77.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003070)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g28480 FvH4_7g28490
malus_domestica	MD01G1188500.v1.1 MD01G1188600.v1.1
prunus_persica	Prupe.2G285300_v2.0.a1
pyrus_communis	pycom01g20020 pycom01g20030
rosa_chinensis	RchiOBHm_Chr1g0375771 RchiOBHm_Chr1g0375821 RchiOBHm_Chr1g0375841 RchiOBHm_Chr1g0375871
rosa_laevigata	RLG00000026648 RLG00000026649 RLG00000026652 RLG00000026654
rosa_multiflora	Rmu_sc0000487.1_g000052 Rmu_sc0001943.1_g000004 Rmu_sc0001943.1_g000006 Rmu_sc0001943.1_g000007
rosa_roxburghii	Rroxscaffold_4G00282570 Rroxscaffold_4G00282610 Rroxscaffold_4G00282640
rosa_rugosa	Rorug01G0391800 Rorug01G0391900 Rorug01G0392000
rosa_samantha	Rh1AG403600 Rh1AG403700 Rh1AG403800 Rh1BG367200 Rh1BG367300 Rh1CG379800 Rh1CG380000 Rh1CG380100 Rh1DG397200 Rh1DG397300
rosa_wichuraiana	Rw0G000980 Rw0G023580 Rw4G005900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	194
AclWI	GGATC	2 cut(s)	41, 164
AfiI	CCNNNNNNNGG	1 cut(s)	114
AgsI	TTSAA	1 cut(s)	149
AluBI	AGCT	4 cut(s)	21, 99, 259, 268
AluI	AGCT	4 cut(s)	21, 99, 259, 268
Alw21I	GWGCWC	1 cut(s)	23
AlwI	GGATC	2 cut(s)	41, 164
AseI	ATTAAT	1 cut(s)	111
AspS9I	GGNCC	1 cut(s)	102
AsuHPI	GGTGA	1 cut(s)	16
AvaII	GGWCC	1 cut(s)	102
BanII	GRGCYC	1 cut(s)	23
Bbv12I	GWGCWC	1 cut(s)	23
BccI	CCATC	2 cut(s)	54, 219
BisI	GCNGC	1 cut(s)	194
BlpI	GCTNAGC	1 cut(s)	260
BlsI	GCNGC	1 cut(s)	195
Bme18I	GGWCC	1 cut(s)	102
BmgT120I	GGNCC	1 cut(s)	102
BmsI	GCATC	1 cut(s)	31
Bpu1102I	GCTNAGC	1 cut(s)	260
BsaBI	GATNNNNATC	1 cut(s)	45
BsaWI	WCCGGW	1 cut(s)	49
Bsc4I	CCNNNNNNNGG	1 cut(s)	114
Bse1I	ACTGG	1 cut(s)	191
Bse8I	GATNNNNATC	1 cut(s)	45
BseGI	GGATG	2 cut(s)	46, 230
BseJI	GATNNNNATC	1 cut(s)	45
BseLI	CCNNNNNNNGG	1 cut(s)	114
BseNI	ACTGG	1 cut(s)	191
BsiHKAI	GWGCWC	1 cut(s)	23
BsiSI	CCGG	1 cut(s)	50
BslI	CCNNNNNNNGG	1 cut(s)	114
BsmI	GAATGC	1 cut(s)	142
Bsp1286I	GDGCHC	1 cut(s)	23
Bsp143I	GATC	2 cut(s)	46, 169
Bsp1720I	GCTNAGC	1 cut(s)	260
BspACI	CCGC	1 cut(s)	194
BspPI	GGATC	2 cut(s)	41, 164
BsrI	ACTGG	1 cut(s)	191
BssMI	GATC	2 cut(s)	46, 169
BstC8I	GCNNGC	2 cut(s)	142, 266
BstDEI	CTNAG	2 cut(s)	252, 260
BstF5I	GGATG	2 cut(s)	46, 230
BstKTI	GATC	2 cut(s)	49, 172
BstMBI	GATC	2 cut(s)	46, 169
BstMWI	GCNNNNNNNGC	2 cut(s)	256, 265
BtgZI	GCGATG	1 cut(s)	84
BtsCI	GGATG	2 cut(s)	46, 230
BtsIMutI	CAGTG	1 cut(s)	162
Cac8I	GCNNGC	2 cut(s)	142, 266
Cfr13I	GGNCC	1 cut(s)	102
CviJI	RGCY	5 cut(s)	21, 81, 99, 259, 268
CviKI_1	RGCY	5 cut(s)	21, 81, 99, 259, 268
DdeI	CTNAG	2 cut(s)	252, 260
DpnI	GATC	2 cut(s)	48, 171
DpnII	GATC	2 cut(s)	46, 169
Ecl136II	GAGCTC	1 cut(s)	21
Eco24I	GRGCYC	1 cut(s)	23
Eco47I	GGWCC	1 cut(s)	102
Eco53kI	GAGCTC	1 cut(s)	21
EcoICRI	GAGCTC	1 cut(s)	21
EcoT38I	GRGCYC	1 cut(s)	23
FaiI	YATR	1 cut(s)	32
Fnu4HI	GCNGC	1 cut(s)	194
FokI	GGATG	2 cut(s)	53, 237
FriOI	GRGCYC	1 cut(s)	23
Fsp4HI	GCNGC	1 cut(s)	194
GluI	GCNGC	1 cut(s)	194
HapII	CCGG	1 cut(s)	50
HinfI	GANTC	1 cut(s)	245
HpaII	CCGG	1 cut(s)	50
HphI	GGTGA	1 cut(s)	16
Hpy166II	GTNNAC	1 cut(s)	105
Hpy188I	TCNGA	3 cut(s)	40, 117, 244
Hpy8I	GTNNAC	1 cut(s)	105
HpyAV	CCTTC	1 cut(s)	143
HpyCH4IV	ACGT	1 cut(s)	207
HpyCH4V	TGCA	1 cut(s)	140
HpyF10VI	GCNNNNNNNGC	2 cut(s)	256, 265
HpyF3I	CTNAG	2 cut(s)	252, 260
HpySE526I	ACGT	1 cut(s)	207
Kzo9I	GATC	2 cut(s)	46, 169
LmnI	GCTCC	1 cut(s)	26
LpnPI	CCDG	5 cut(s)	63, 72, 85, 172, 210
LweI	GCATC	1 cut(s)	31
MaeII	ACGT	1 cut(s)	207
MaeIII	GTNAC	2 cut(s)	12, 203
MalI	GATC	2 cut(s)	48, 171
MboI	GATC	2 cut(s)	46, 169
MfeI	CAATTG	1 cut(s)	129
MhlI	GDGCHC	1 cut(s)	23
MluCI	AATT	1 cut(s)	129
MlyI	GAGTC	1 cut(s)	254
MseI	TTAA	2 cut(s)	27, 111
MspI	CCGG	1 cut(s)	50
MunI	CAATTG	1 cut(s)	129
Mva1269I	GAATGC	1 cut(s)	142
MwoI	GCNNNNNNNGC	2 cut(s)	256, 265
NdeII	GATC	2 cut(s)	46, 169
NmuCI	GTSAC	1 cut(s)	203
PctI	GAATGC	1 cut(s)	142
PkrI	GCNGC	1 cut(s)	195
PleI	GAGTC	1 cut(s)	253
PpsI	GAGTC	1 cut(s)	253
PshBI	ATTAAT	1 cut(s)	111
Psp124BI	GAGCTC	1 cut(s)	23
PspPI	GGNCC	1 cut(s)	102
SacI	GAGCTC	1 cut(s)	23
SaqAI	TTAA	2 cut(s)	27, 111
SatI	GCNGC	1 cut(s)	194
Sau3AI	GATC	2 cut(s)	46, 169
Sau96I	GGNCC	1 cut(s)	102
SchI	GAGTC	1 cut(s)	254
SduI	GDGCHC	1 cut(s)	23
SetI	ASST	6 cut(s)	23, 101, 154, 210, 261, 270
SfaNI	GCATC	1 cut(s)	31
SinI	GGWCC	1 cut(s)	102
Sse9I	AATT	1 cut(s)	129
SsiI	CCGC	1 cut(s)	194
SstI	GAGCTC	1 cut(s)	23
TaiI	ACGT	1 cut(s)	210
TaqI	TCGA	1 cut(s)	212
TasI	AATT	1 cut(s)	129
TauI	GCSGC	1 cut(s)	196
Tru1I	TTAA	2 cut(s)	27, 111
Tru9I	TTAA	2 cut(s)	27, 111
TscAI	CASTG	1 cut(s)	169
TseFI	GTSAC	1 cut(s)	203
Tsp45I	GTSAC	1 cut(s)	203
TspDTI	ATGAA	1 cut(s)	111
TspRI	CASTG	1 cut(s)	169
VpaK11BI	GGWCC	1 cut(s)	102
VspI	ATTAAT	1 cut(s)	111

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.