Rh1CG380000

alpha-L-fucosidase 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0003070
Physical Location & Seq
Reverse (-)
64982959 .. 64986042
3084 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG380000.1

Sequence Viewer

Length: 1461 bp
ATGGCTAAACACTGGCGCTCTTTGTGCATATTCACATTCCTCCAACTTTGCACATTCACCATCTCAAGGCTTGAGCAAGTCCCAACACCACCATTACCCATTCTACCACTTCCCACATATTCCCAGCTCAAATGGCAACAGAGGGAGCTCATAATGTTCCTCCATTTCGGAGTGAACACCTTCACCGACTCCGAATGGGGAACCGGCCGTGAAAGCCCGACCATTTTCAACCCGGCCGGGCTTGACGCCAACCAGTGGTTCAAAACAGCTTCGGATGCAGGCATATCACTAGTGATACTCACTGCAAAGCACCATGATGGGTTTTGCTTGTGGCCTTCAAAGTACACTGACCACTCCGTGGAGAGTAGTCCTTGGAAAAGTGGCCATGGTGATGTTGTTCAAGAGCTGGTCACTGCCGCCAAGACACGTGACGGCATTGACGTCGGGCTTTATCTGTCGCCGTGGGATAGGCATGACCGGAGATACGGTCAGGAGGTAGCATACAATCAGTACTACTTGGCCCAATTACAAGAACTTCTCAGCAGGTACGGGAGTGTAAGAGAAATTTGGTTCGATGGAAGTAAGGGTCCGAATGCACCAAACATGTCCTATTACTTTTCAGATTGGTTCTCCATGGTGAGGGAGTTACAGAGCTCCATTAACATATTCTCAGATGCTGGTCCGGATGTTAGATGGGTCGGCGATGAGCAAGGCTTTGCCGGAAGCACAAGCTGGTCCACCATTAATCGGAGTTCATTATCAATAGGGAATGCAAGCATTGAAGGTTATCTCAACACTGGTGATCCACAAGGAACAGACTGGTTGCCGCCAGAATGTGACGTTTCGATAAGAAATGGATGGTTTTGGCACAAATCAGAGTCGCCTAAGAAGCTAAGCAAGCTACTTGAAATTTACTACAACTCTGTAGGAAGAAATTGTGTGCTGTTACTCAATGTGCCTCCTAATTCGACAGGACTTATATCCGAAGCAGATGTGCATAGACTCAGAGAATTGAGAGGTGCAATTGACACAATATTTTCTAGCAATTTAGCTGATAAATGCTTCATCAAAGTGAGTAGCCAAAGAGGAGGCAAAGGAGGAGGTTTTGGACCTGAAAATGTGCTAGACAGTGACCATTTGTGGACATATTGGGCTCCAAAGGATGGTGACAAAGAGGAGCATTGGATTGAATTTAGAGGCAGAGATAAAGGATTGAGGTTCAATGTGATTAGGATTCAAGAGGCAATCGGGCTTGGCCAAAGAATCAAAAGGCATGAAATTTATGTGGATGGTAAGAGGGTTGCAAAAGGAACCACAGTGGGATACAAGAGGCTTCACAGACTTGAAGGGGGGGTAGTCTATGGCCAAATTGTCAGAATTAGAATTAAAGACTCAAAAGGGATGCCTTTGATTTCTTCCATTGGTCTACATTTTGATCCCTATTGGCACCCAAGTGGGTAG

Protein Analysis

486

Amino Acids

55.06

Weight (kDa)

7.69

Isoelectric Point (pI)

44.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Alpha_L_fucos PF01120 75 - 338 6.6e-33 Alpha-L-fucosidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 444
Acc36I ACCTGC 1 cut(s) 534
AccB1I GGYRCC 1 cut(s) 1446
AccB7I CCANNNNNTGG 3 cut(s) 255, 358, 1163
AccI GTMKAC 1 cut(s) 1426
AccIII TCCGGA 1 cut(s) 682
AciI CCGC 2 cut(s) 417, 827
AclWI GGATC 2 cut(s) 797, 1430
AcoI YGGCCR 5 cut(s) 205, 234, 382, 1255, 1363
AcsI RAATTY 4 cut(s) 564, 909, 1190, 1278
AcvI CACGTG 1 cut(s) 428
AcyI GRCGYC 2 cut(s) 246, 441
AdeI CACNNNGTG 1 cut(s) 358
AfaI GTAC 3 cut(s) 344, 512, 548
AfiI CCNNNNNNNGG 6 cut(s) 66, 255, 358, 639, 747, 1163
AflIII ACRYGT 2 cut(s) 425, 603
AhlI ACTAGT 1 cut(s) 289
AjuI GAANNNNNNNTTGG 2 cut(s) 242, 274
AleI CACNNNNGTG 1 cut(s) 1452
AluBI AGCT 9 cut(s) 127, 148, 269, 406, 654, 732, 892, 901, 1052
AluI AGCT 9 cut(s) 127, 148, 269, 406, 654, 732, 892, 901, 1052
Alw21I GWGCWC 2 cut(s) 150, 656
AlwI GGATC 2 cut(s) 797, 1430
AlwNI CAGNNNCTG 1 cut(s) 677
Aor13HI TCCGGA 1 cut(s) 682
AoxI GGCC 7 cut(s) 205, 234, 332, 382, 519, 1255, 1363
ApoI RAATTY 4 cut(s) 564, 909, 1190, 1278
AseI ATTAAT 1 cut(s) 744
Asp700I GAANNNNTTC 1 cut(s) 179
AspLEI GCGC 1 cut(s) 18
AspS9I GGNCC 5 cut(s) 520, 587, 680, 735, 1109
AsuC2I CCSGG 2 cut(s) 233, 238
AsuHPI GGTGA 6 cut(s) 49, 175, 401, 649, 812, 1178
AvaII GGWCC 4 cut(s) 587, 680, 735, 1109
BaeI ACNNNNGTAYC 2 cut(s) 538, 571
BalI TGGCCA 3 cut(s) 384, 1257, 1365
BanI GGYRCC 1 cut(s) 1446
BanII GRGCYC 3 cut(s) 150, 656, 1156
BbrPI CACGTG 1 cut(s) 428
Bbv12I GWGCWC 2 cut(s) 150, 656
BccI CCATC 7 cut(s) 68, 311, 569, 687, 852, 1157, 1283
BceAI ACGGC 3 cut(s) 192, 445, 448
BcgI CGANNNNNNTGC 2 cut(s) 424, 458
BciVI GTATCC 1 cut(s) 1316
BcnI CCSGG 2 cut(s) 233, 238
BcuI ACTAGT 1 cut(s) 289
BfaI CTAG 3 cut(s) 290, 1041, 1124
BfmI CTRYAG 1 cut(s) 924
BfoI RGCGCY 1 cut(s) 19
BfuAI ACCTGC 1 cut(s) 534
BfuI GTATCC 1 cut(s) 1316
BisI GCNGC 2 cut(s) 417, 827
BlpI GCTNAGC 1 cut(s) 893
BlsI GCNGC 2 cut(s) 418, 828
BmcAI AGTACT 1 cut(s) 512
Bme1390I CCNGG 2 cut(s) 233, 238
Bme18I GGWCC 4 cut(s) 587, 680, 735, 1109
BmgT120I GGNCC 5 cut(s) 520, 587, 680, 735, 1109
BmiI GGNNCC 5 cut(s) 202, 588, 1155, 1312, 1448
BmrFI CCNGG 2 cut(s) 233, 238
BmsI GCATC 3 cut(s) 265, 664, 1392
Bpu1102I GCTNAGC 1 cut(s) 893
BpuEI CTTGAG 2 cut(s) 49, 92
BpuMI CCSGG 2 cut(s) 233, 238
BsaAI YACGTR 1 cut(s) 428
BsaHI GRCGYC 2 cut(s) 246, 441
BsaJI CCNNGG 5 cut(s) 357, 371, 385, 461, 633
BsaWI WCCGGW 2 cut(s) 477, 682
BsaXI ACNNNNNCTCC 2 cut(s) 472, 502
Bsc4I CCNNNNNNNGG 6 cut(s) 66, 255, 358, 639, 747, 1163
Bse118I RCCGGY 1 cut(s) 203
Bse1I ACTGG 4 cut(s) 17, 253, 802, 824
BseAI TCCGGA 1 cut(s) 682
BseDI CCNNGG 5 cut(s) 357, 371, 385, 461, 633
BseGI GGATG 6 cut(s) 280, 691, 863, 1168, 1294, 1407
BseLI CCNNNNNNNGG 6 cut(s) 66, 255, 358, 639, 747, 1163
BseMII CTCAG 3 cut(s) 553, 684, 1018
BseNI ACTGG 4 cut(s) 17, 253, 802, 824
BseRI GAGGAG 3 cut(s) 1101, 1113, 1190
BseX3I CGGCCG 2 cut(s) 205, 234
BseYI CCCAGC 1 cut(s) 123
Bsh1285I CGRYCG 2 cut(s) 208, 237
BshFI GGCC 7 cut(s) 207, 236, 334, 384, 521, 1257, 1365
BshNI GGYRCC 1 cut(s) 1446
BsiEI CGRYCG 2 cut(s) 208, 237
BsiHKAI GWGCWC 2 cut(s) 150, 656
BsiSI CCGG 6 cut(s) 204, 233, 237, 478, 683, 720
BslFI GGGAC 1 cut(s) 65
BslI CCNNNNNNNGG 6 cut(s) 66, 255, 358, 639, 747, 1163
BsmFI GGGAC 1 cut(s) 65
BsmI GAATGC 2 cut(s) 598, 775
BsnI GGCC 7 cut(s) 207, 236, 334, 384, 521, 1257, 1365
Bsp1286I GDGCHC 3 cut(s) 150, 656, 1156
Bsp13I TCCGGA 1 cut(s) 682
Bsp143I GATC 2 cut(s) 802, 1435
Bsp1720I GCTNAGC 1 cut(s) 893
Bsp19I CCATGG 2 cut(s) 385, 633
BspACI CCGC 2 cut(s) 417, 827
BspANI GGCC 7 cut(s) 207, 236, 334, 384, 521, 1257, 1365
BspCNI CTCAG 3 cut(s) 552, 683, 1017
BspEI TCCGGA 1 cut(s) 682
BspLI GGNNCC 5 cut(s) 202, 588, 1155, 1312, 1448
BspMI ACCTGC 1 cut(s) 534
BspPI GGATC 2 cut(s) 797, 1430
BspT107I GGYRCC 1 cut(s) 1446
BsrFI RCCGGY 1 cut(s) 203
BsrI ACTGG 4 cut(s) 17, 253, 802, 824
BssAI RCCGGY 1 cut(s) 203
BssECI CCNNGG 5 cut(s) 357, 371, 385, 461, 633
BssMI GATC 2 cut(s) 802, 1435
BssNI GRCGYC 2 cut(s) 246, 441
BssT1I CCWWGG 3 cut(s) 371, 385, 633
Bst4CI ACNGT 3 cut(s) 488, 1130, 1318
BstACI GRCGYC 2 cut(s) 246, 441
BstBAI YACGTR 1 cut(s) 428
BstC8I GCNNGC 3 cut(s) 280, 775, 899
BstDEI CTNAG 5 cut(s) 539, 670, 885, 893, 1004
BstDSI CCRYGG 4 cut(s) 357, 385, 461, 633
BstF5I GGATG 6 cut(s) 280, 691, 863, 1168, 1294, 1407
BstH2I RGCGCY 1 cut(s) 19
BstHHI GCGC 1 cut(s) 18
BstKTI GATC 2 cut(s) 805, 1438
BstMBI GATC 2 cut(s) 802, 1435
BstMCI CGRYCG 2 cut(s) 208, 237
BstMWI GCNNNNNNNGC 6 cut(s) 24, 133, 213, 275, 889, 898
BstNSI RCATGY 1 cut(s) 607
BstSCI CCNGG 2 cut(s) 231, 236
BstSFI CTRYAG 1 cut(s) 924
BstZI CGGCCG 2 cut(s) 205, 234
BsuI GTATCC 1 cut(s) 1316
BsuRI GGCC 7 cut(s) 207, 236, 334, 384, 521, 1257, 1365
BtgI CCRYGG 4 cut(s) 357, 385, 461, 633
BtgZI GCGATG 1 cut(s) 717
BtsCI GGATG 6 cut(s) 280, 691, 863, 1168, 1294, 1407
BtsI GCAGTG 2 cut(s) 300, 411
BtsIMutI CAGTG 8 cut(s) 10, 260, 300, 345, 411, 795, 1135, 1323
BveI ACCTGC 1 cut(s) 534
Cac8I GCNNGC 3 cut(s) 280, 775, 899
CaiI CAGNNNCTG 1 cut(s) 677
CfoI GCGC 1 cut(s) 18
Cfr10I RCCGGY 1 cut(s) 203
Cfr13I GGNCC 5 cut(s) 520, 587, 680, 735, 1109
CseI GACGC 1 cut(s) 254
Csp6I GTAC 3 cut(s) 343, 511, 547
CviAII CATG 6 cut(s) 314, 386, 473, 604, 634, 1274
CviQI GTAC 3 cut(s) 343, 511, 547
DdeI CTNAG 5 cut(s) 539, 670, 885, 893, 1004
DpnI GATC 2 cut(s) 804, 1437
DpnII GATC 2 cut(s) 802, 1435
DraIII CACNNNGTG 1 cut(s) 358
EaeI YGGCCR 5 cut(s) 205, 234, 382, 1255, 1363
EagI CGGCCG 2 cut(s) 205, 234
Ecl136II GAGCTC 2 cut(s) 148, 654
EclXI CGGCCG 2 cut(s) 205, 234
Eco130I CCWWGG 3 cut(s) 371, 385, 633
Eco24I GRGCYC 3 cut(s) 150, 656, 1156
Eco47I GGWCC 4 cut(s) 587, 680, 735, 1109
Eco52I CGGCCG 2 cut(s) 205, 234
Eco53kI GAGCTC 2 cut(s) 148, 654
Eco72I CACGTG 1 cut(s) 428
EcoICRI GAGCTC 2 cut(s) 148, 654
EcoT14I CCWWGG 3 cut(s) 371, 385, 633
EcoT38I GRGCYC 3 cut(s) 150, 656, 1156
ErhI CCWWGG 3 cut(s) 371, 385, 633
FaeI CATG 6 cut(s) 317, 389, 476, 607, 637, 1277
FaqI GGGAC 1 cut(s) 65
FatI CATG 6 cut(s) 313, 385, 472, 603, 633, 1273
FblI GTMKAC 1 cut(s) 1426
Fnu4HI GCNGC 2 cut(s) 417, 827
FokI GGATG 6 cut(s) 287, 698, 870, 1175, 1301, 1414
FriOI GRGCYC 3 cut(s) 150, 656, 1156
Fsp4HI GCNGC 2 cut(s) 417, 827
FspBI CTAG 3 cut(s) 290, 1041, 1124
GlaI GCGC 1 cut(s) 17
GluI GCNGC 2 cut(s) 417, 827
GsaI CCCAGC 1 cut(s) 127
HaeII RGCGCY 1 cut(s) 19
HaeIII GGCC 7 cut(s) 207, 236, 334, 384, 521, 1257, 1365
HapII CCGG 6 cut(s) 204, 233, 237, 478, 683, 720
HgaI GACGC 1 cut(s) 254
HhaI GCGC 1 cut(s) 18
Hin1I GRCGYC 2 cut(s) 246, 441
Hin1II CATG 6 cut(s) 317, 389, 476, 607, 637, 1277
Hin6I GCGC 1 cut(s) 16
HinP1I GCGC 1 cut(s) 16
HinfI GANTC 6 cut(s) 188, 878, 1002, 1234, 1263, 1391
HpaII CCGG 6 cut(s) 204, 233, 237, 478, 683, 720
HphI GGTGA 6 cut(s) 49, 175, 401, 649, 812, 1178
Hpy166II GTNNAC 5 cut(s) 175, 345, 738, 1143, 1427
Hpy188III TCNNGA 4 cut(s) 401, 491, 683, 1238
Hpy8I GTNNAC 5 cut(s) 175, 345, 738, 1143, 1427
Hpy99I CGWCG 1 cut(s) 446
HpyAV CCTTC 4 cut(s) 190, 345, 776, 1340
HpyCH4III ACNGT 3 cut(s) 488, 1130, 1318
HpyCH4IV ACGT 3 cut(s) 427, 441, 840
HpyCH4V TGCA 9 cut(s) 27, 51, 278, 305, 596, 773, 997, 1022, 1304
HpyF10VI GCNNNNNNNGC 6 cut(s) 24, 133, 213, 275, 889, 898
HpyF3I CTNAG 5 cut(s) 539, 670, 885, 893, 1004
HpySE526I ACGT 3 cut(s) 427, 441, 840
Hsp92I GRCGYC 2 cut(s) 246, 441
Hsp92II CATG 6 cut(s) 317, 389, 476, 607, 637, 1277
HspAI GCGC 1 cut(s) 16
Kpn2I TCCGGA 1 cut(s) 682
Kzo9I GATC 2 cut(s) 802, 1435
LmnI GCTCC 4 cut(s) 145, 659, 1159, 1177
LweI GCATC 3 cut(s) 265, 664, 1392
MaeI CTAG 3 cut(s) 290, 1041, 1124
MaeII ACGT 3 cut(s) 427, 441, 840
MaeIII GTNAC 7 cut(s) 409, 428, 645, 836, 945, 1130, 1166
MalI GATC 2 cut(s) 804, 1437
MboI GATC 2 cut(s) 802, 1435
MboII GAAGA 2 cut(s) 942, 1407
MfeI CAATTG 1 cut(s) 1023
MhlI GDGCHC 3 cut(s) 150, 656, 1156
MlsI TGGCCA 3 cut(s) 384, 1257, 1365
MluNI TGGCCA 3 cut(s) 384, 1257, 1365
MlyI GAGTC 4 cut(s) 182, 887, 996, 1385
MmeI TCCRAC 1 cut(s) 67
Mox20I TGGCCA 3 cut(s) 384, 1257, 1365
MroI TCCGGA 1 cut(s) 682
MroXI GAANNNNTTC 1 cut(s) 179
MscI TGGCCA 3 cut(s) 384, 1257, 1365
MseI TTAA 3 cut(s) 660, 744, 1386
MslI CAYNNNNRTG 4 cut(s) 315, 390, 1070, 1452
Msp20I TGGCCA 3 cut(s) 384, 1257, 1365
MspI CCGG 6 cut(s) 204, 233, 237, 478, 683, 720
MspR9I CCNGG 2 cut(s) 233, 238
MunI CAATTG 1 cut(s) 1023
Mva1269I GAATGC 2 cut(s) 598, 775
MwoI GCNNNNNNNGC 6 cut(s) 24, 133, 213, 275, 889, 898
NciI CCSGG 2 cut(s) 233, 238
NcoI CCATGG 2 cut(s) 385, 633
NdeII GATC 2 cut(s) 802, 1435
NlaIII CATG 6 cut(s) 317, 389, 476, 607, 637, 1277
NlaIV GGNNCC 5 cut(s) 202, 588, 1155, 1312, 1448
NmuCI GTSAC 5 cut(s) 409, 428, 836, 1130, 1166
NspI RCATGY 1 cut(s) 607
OliI CACNNNNGTG 1 cut(s) 1452
PciI ACATGT 1 cut(s) 603
PcsI WCGNNNNNNNCGW 1 cut(s) 438
PctI GAATGC 2 cut(s) 598, 775
PdmI GAANNNNTTC 1 cut(s) 179
PfeI GAWTC 2 cut(s) 1234, 1263
PflMI CCANNNNNTGG 3 cut(s) 255, 358, 1163
PkrI GCNGC 2 cut(s) 418, 828
PleI GAGTC 4 cut(s) 182, 886, 996, 1385
PmaCI CACGTG 1 cut(s) 428
PmlI CACGTG 1 cut(s) 428
PpsI GAGTC 4 cut(s) 182, 886, 996, 1385
Ppu21I YACGTR 1 cut(s) 428
PscI ACATGT 1 cut(s) 603
PshBI ATTAAT 1 cut(s) 744
Psp124BI GAGCTC 2 cut(s) 150, 656
PspCI CACGTG 1 cut(s) 428
PspFI CCCAGC 1 cut(s) 123
PspN4I GGNNCC 5 cut(s) 202, 588, 1155, 1312, 1448
PspPI GGNCC 5 cut(s) 520, 587, 680, 735, 1109
PstNI CAGNNNCTG 1 cut(s) 677
RsaI GTAC 3 cut(s) 344, 512, 548
RsaNI GTAC 3 cut(s) 343, 511, 547
RseI CAYNNNNRTG 4 cut(s) 315, 390, 1070, 1452
SacI GAGCTC 2 cut(s) 150, 656
SaqAI TTAA 3 cut(s) 660, 744, 1386
SatI GCNGC 2 cut(s) 417, 827
Sau3AI GATC 2 cut(s) 802, 1435
Sau96I GGNCC 5 cut(s) 520, 587, 680, 735, 1109
ScaI AGTACT 1 cut(s) 512
SchI GAGTC 4 cut(s) 182, 887, 996, 1385
ScrFI CCNGG 2 cut(s) 233, 238
SduI GDGCHC 3 cut(s) 150, 656, 1156
SfaNI GCATC 3 cut(s) 265, 664, 1392
SfcI CTRYAG 1 cut(s) 924
SinI GGWCC 4 cut(s) 587, 680, 735, 1109
SmiMI CAYNNNNRTG 4 cut(s) 315, 390, 1070, 1452
SmlI CTYRAG 2 cut(s) 64, 71
SmoI CTYRAG 2 cut(s) 64, 71
SpeI ACTAGT 1 cut(s) 289
SsiI CCGC 2 cut(s) 417, 827
SspI AATATT 1 cut(s) 1035
SspMI CTAG 3 cut(s) 290, 1041, 1124
SstI GAGCTC 2 cut(s) 150, 656
StyD4I CCNGG 2 cut(s) 231, 236
StyI CCWWGG 3 cut(s) 371, 385, 633
TaaI ACNGT 3 cut(s) 488, 1130, 1318
TaiI ACGT 3 cut(s) 430, 444, 843
TaqI TCGA 3 cut(s) 573, 845, 968
TatI WGTACW 2 cut(s) 342, 510
TauI GCSGC 2 cut(s) 419, 829
TfiI GAWTC 2 cut(s) 1234, 1263
Tru1I TTAA 3 cut(s) 660, 744, 1386
Tru9I TTAA 3 cut(s) 660, 744, 1386
TscAI CASTG 8 cut(s) 17, 260, 307, 352, 418, 802, 1135, 1323
TseFI GTSAC 5 cut(s) 409, 428, 836, 1130, 1166
Tsp45I GTSAC 5 cut(s) 409, 428, 836, 1130, 1166
TspDTI ATGAA 3 cut(s) 744, 1054, 1290
TspGWI ACGGA 1 cut(s) 346
TspRI CASTG 8 cut(s) 17, 260, 307, 352, 418, 802, 1135, 1323
Van91I CCANNNNNTGG 3 cut(s) 255, 358, 1163
VpaK11BI GGWCC 4 cut(s) 587, 680, 735, 1109
VspI ATTAAT 1 cut(s) 744
XapI RAATTY 4 cut(s) 564, 909, 1190, 1278
XceI RCATGY 1 cut(s) 607
XmiI GTMKAC 1 cut(s) 1426
XmnI GAANNNNTTC 1 cut(s) 179
XspI CTAG 3 cut(s) 290, 1041, 1124
ZraI GACGTC 1 cut(s) 442
ZrmI AGTACT 1 cut(s) 512
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.