Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0003070

Physical Location & Seq

Genomic Coordinates Reverse (-)

63137030 .. 63138672

Gene Structure 1643 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG403800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGTCCTATTATTTTACAGATTGGTTCTCTATGGTGAAGGAGTTGCAGAGTTCCATTAACATATTTTCTGATGCTGGTCCTGATGTTAGATGGGTTGGAAATGAGGCTGGGTTTGCGGGGAAAACATGCTGGTCCACCATCAATCGGACCTCGTTATCAATTGGGAATGCAAGCATTGAGGATTATCTCAACAAAGGTGATCCAAAAGGGACAGATTGGTTGCCAGCAGAGTGCGATGTCTCAATCAGAAAAGGATGGTTTTGGCATAGTTCAGAGTCACCTAAGAAGCTAAGCCAGCTACTCGAAATTTACTATAACTCAGTAGGACGAAATGCTGTGTTACCACTCAACGTGCCTCCTAATTCGACAGGGCTCATATCCGAAGTAGATGTCCAAAGACTCCGAGAATTCAGAATTGCAATCGACACCATATTTTCGACCAATGTAGCAGAGAAATGCTCCATCAAGGTGAGTAGCCAAAGAGGGGGTACAGGAGGAGGTTTTGGACCTGAGAATGTGCTAGACAGTGACCATTTGTGGACATATTGGGCTCTAAGGGATGGTGACAAAGAGGACCACTGGATTGAATTCAGAGCAGATGAAGGGATGAGGTTCAATGTGATCAGGATTCAAGAGGCGATTGGGCTAGGTCATAGGATCAAACGGCACGAAATTTGTGTCGATGGTAAAATAGTAGTTAATGGAACCACAGTGGGTCACAAGGGACTTCACAGACTTGAAGAGGGAGTAGTCCATGGCCAAACAGTAAGAATTAGAATTAAAGAATCAAGAGGAGGGCTTCCTTTAATTTCATCCATTGGCCTGCATTTTGATCCCTATTGGCCCCCAGATAAAGGTGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004560 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006516 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009100 GO:0009987 GO:0015928 GO:0016787 GO:0016798 GO:0019538 GO:0030163 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:1901135 GO:1901136 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00511 map00511

Pfam Domains

Protein Families

Alpha_L_fucos F5_F8_type_C

Protein Analysis

287

Amino Acids

32.16

Weight (kDa)

6.32

Isoelectric Point (pI)

38.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003070)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g28480 FvH4_7g28490
malus_domestica	MD01G1188500.v1.1 MD01G1188600.v1.1
prunus_persica	Prupe.2G285300_v2.0.a1
pyrus_communis	pycom01g20020 pycom01g20030
rosa_chinensis	RchiOBHm_Chr1g0375771 RchiOBHm_Chr1g0375821 RchiOBHm_Chr1g0375841 RchiOBHm_Chr1g0375871
rosa_laevigata	RLG00000026648 RLG00000026649 RLG00000026652 RLG00000026654
rosa_multiflora	Rmu_sc0000487.1_g000052 Rmu_sc0001943.1_g000004 Rmu_sc0001943.1_g000006 Rmu_sc0001943.1_g000007
rosa_roxburghii	Rroxscaffold_4G00282570 Rroxscaffold_4G00282610 Rroxscaffold_4G00282640
rosa_rugosa	Rorug01G0391800 Rorug01G0391900 Rorug01G0392000
rosa_samantha	Rh1AG403600 Rh1AG403700 Rh1AG403800 Rh1BG367200 Rh1BG367300 Rh1CG379800 Rh1CG380000 Rh1CG380100 Rh1DG397200 Rh1DG397300
rosa_wichuraiana	Rw0G000980 Rw0G023580 Rw4G005900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	116
AclWI	GGATC	3 cut(s)	194, 665, 827
AcoI	YGGCCR	1 cut(s)	757
AcsI	RAATTY	4 cut(s)	306, 407, 587, 672
AfaI	GTAC	1 cut(s)	490
AfiI	CCNNNNNNNGG	3 cut(s)	144, 484, 854
AgsI	TTSAA	4 cut(s)	587, 616, 632, 740
AluBI	AGCT	2 cut(s)	289, 298
AluI	AGCT	2 cut(s)	289, 298
Alw26I	GTCTC	1 cut(s)	244
AlwI	GGATC	3 cut(s)	194, 665, 827
AoxI	GGCC	3 cut(s)	757, 820, 842
ApoI	RAATTY	4 cut(s)	306, 407, 587, 672
ArsI	GACNNNNNNTTYG	4 cut(s)	375, 407, 663, 695
AspS9I	GGNCC	6 cut(s)	77, 132, 147, 506, 574, 843
AsuHPI	GGTGA	5 cut(s)	46, 209, 270, 481, 575
AvaII	GGWCC	5 cut(s)	77, 132, 147, 506, 574
BalI	TGGCCA	1 cut(s)	759
BanII	GRGCYC	2 cut(s)	375, 553
BccI	CCATC	6 cut(s)	84, 146, 249, 470, 554, 677
BceAI	ACGGC	1 cut(s)	680
BclI	TGATCA	1 cut(s)	621
BcoDI	GTCTC	1 cut(s)	244
BfaI	CTAG	2 cut(s)	521, 647
BlpI	GCTNAGC	1 cut(s)	290
Bme18I	GGWCC	5 cut(s)	77, 132, 147, 506, 574
BmgT120I	GGNCC	6 cut(s)	77, 132, 147, 506, 574, 843
BmiI	GGNNCC	2 cut(s)	706, 845
BmsI	GCATC	1 cut(s)	61
BplI	GAGNNNNNCTC	2 cut(s)	443, 475
Bpu1102I	GCTNAGC	1 cut(s)	290
BsaJI	CCNNGG	1 cut(s)	754
Bsc4I	CCNNNNNNNGG	3 cut(s)	144, 484, 854
Bse1I	ACTGG	1 cut(s)	584
BseDI	CCNNGG	1 cut(s)	754
BseGI	GGATG	4 cut(s)	260, 565, 612, 812
BseLI	CCNNNNNNNGG	3 cut(s)	144, 484, 854
BseMII	CTCAG	2 cut(s)	333, 501
BseNI	ACTGG	1 cut(s)	584
BseRI	GAGGAG	2 cut(s)	510, 807
BseYI	CCCAGC	1 cut(s)	107
BshFI	GGCC	3 cut(s)	759, 822, 844
BslFI	GGGAC	2 cut(s)	223, 738
BslI	CCNNNNNNNGG	3 cut(s)	144, 484, 854
BsmAI	GTCTC	1 cut(s)	244
BsmFI	GGGAC	2 cut(s)	223, 738
BsmI	GAATGC	1 cut(s)	172
BsnI	GGCC	3 cut(s)	759, 822, 844
Bsp1286I	GDGCHC	2 cut(s)	375, 553
Bsp143I	GATC	4 cut(s)	199, 621, 657, 832
Bsp1720I	GCTNAGC	1 cut(s)	290
Bsp19I	CCATGG	1 cut(s)	754
BspACI	CCGC	1 cut(s)	116
BspANI	GGCC	3 cut(s)	759, 822, 844
BspCNI	CTCAG	2 cut(s)	332, 502
BspLI	GGNNCC	2 cut(s)	706, 845
BspPI	GGATC	3 cut(s)	194, 665, 827
BsrI	ACTGG	1 cut(s)	584
BssECI	CCNNGG	1 cut(s)	754
BssMI	GATC	4 cut(s)	199, 621, 657, 832
BssT1I	CCWWGG	1 cut(s)	754
Bst4CI	ACNGT	3 cut(s)	527, 712, 766
Bst6I	CTCTTC	1 cut(s)	735
BstC8I	GCNNGC	4 cut(s)	172, 225, 296, 824
BstDEI	CTNAG	5 cut(s)	282, 290, 319, 510, 554
BstDSI	CCRYGG	1 cut(s)	754
BstF5I	GGATG	4 cut(s)	260, 565, 612, 812
BstKTI	GATC	4 cut(s)	202, 624, 660, 835
BstMAI	GTCTC	1 cut(s)	244
BstMBI	GATC	4 cut(s)	199, 621, 657, 832
BstMWI	GCNNNNNNNGC	2 cut(s)	113, 295
BstNSI	RCATGY	1 cut(s)	129
BsuRI	GGCC	3 cut(s)	759, 822, 844
BtgI	CCRYGG	1 cut(s)	754
BtgZI	GCGATG	1 cut(s)	249
BtsCI	GGATG	4 cut(s)	260, 565, 612, 812
BtsIMutI	CAGTG	3 cut(s)	532, 577, 717
Cac8I	GCNNGC	4 cut(s)	172, 225, 296, 824
Cfr13I	GGNCC	6 cut(s)	77, 132, 147, 506, 574, 843
Csp6I	GTAC	1 cut(s)	489
CviAII	CATG	2 cut(s)	126, 755
CviQI	GTAC	1 cut(s)	489
DdeI	CTNAG	5 cut(s)	282, 290, 319, 510, 554
DpnI	GATC	4 cut(s)	201, 623, 659, 834
DpnII	GATC	4 cut(s)	199, 621, 657, 832
EaeI	YGGCCR	1 cut(s)	757
Eam1104I	CTCTTC	1 cut(s)	735
EarI	CTCTTC	1 cut(s)	735
Eco130I	CCWWGG	1 cut(s)	754
Eco24I	GRGCYC	2 cut(s)	375, 553
Eco47I	GGWCC	5 cut(s)	77, 132, 147, 506, 574
EcoRI	GAATTC	2 cut(s)	407, 587
EcoT14I	CCWWGG	1 cut(s)	754
EcoT38I	GRGCYC	2 cut(s)	375, 553
ErhI	CCWWGG	1 cut(s)	754
FaeI	CATG	2 cut(s)	129, 758
FaqI	GGGAC	2 cut(s)	223, 738
FatI	CATG	2 cut(s)	125, 754
FauI	CCCGC	1 cut(s)	109
FbaI	TGATCA	1 cut(s)	621
FokI	GGATG	4 cut(s)	267, 572, 619, 799
FriOI	GRGCYC	2 cut(s)	375, 553
FspBI	CTAG	2 cut(s)	521, 647
GsaI	CCCAGC	1 cut(s)	111
HaeIII	GGCC	3 cut(s)	759, 822, 844
Hin1II	CATG	2 cut(s)	129, 758
HinfI	GANTC	4 cut(s)	275, 399, 628, 785
HphI	GGTGA	5 cut(s)	46, 209, 270, 481, 575
Hpy166II	GTNNAC	2 cut(s)	135, 540
Hpy188I	TCNGA	8 cut(s)	70, 147, 248, 274, 382, 404, 413, 593
Hpy188III	TCNNGA	4 cut(s)	80, 625, 632, 789
Hpy8I	GTNNAC	2 cut(s)	135, 540
HpyAV	CCTTC	2 cut(s)	31, 596
HpyCH4III	ACNGT	3 cut(s)	527, 712, 766
HpyCH4IV	ACGT	1 cut(s)	351
HpyCH4V	TGCA	4 cut(s)	46, 170, 419, 826
HpyF10VI	GCNNNNNNNGC	2 cut(s)	113, 295
HpyF3I	CTNAG	5 cut(s)	282, 290, 319, 510, 554
HpySE526I	ACGT	1 cut(s)	351
Hsp92II	CATG	2 cut(s)	129, 758
Ksp22I	TGATCA	1 cut(s)	621
Kzo9I	GATC	4 cut(s)	199, 621, 657, 832
LmnI	GCTCC	1 cut(s)	464
LweI	GCATC	1 cut(s)	61
MaeI	CTAG	2 cut(s)	521, 647
MaeII	ACGT	1 cut(s)	351
MaeIII	GTNAC	5 cut(s)	276, 339, 527, 563, 716
MalI	GATC	4 cut(s)	201, 623, 659, 834
MboI	GATC	4 cut(s)	199, 621, 657, 832
MboII	GAAGA	1 cut(s)	752
MfeI	CAATTG	1 cut(s)	159
MhlI	GDGCHC	2 cut(s)	375, 553
MlsI	TGGCCA	1 cut(s)	759
MluNI	TGGCCA	1 cut(s)	759
MlyI	GAGTC	2 cut(s)	284, 393
MmeI	TCCRAC	1 cut(s)	76
Mox20I	TGGCCA	1 cut(s)	759
MscI	TGGCCA	1 cut(s)	759
MseI	TTAA	4 cut(s)	57, 699, 780, 806
MslI	CAYNNNNRTG	1 cut(s)	467
Msp20I	TGGCCA	1 cut(s)	759
MunI	CAATTG	1 cut(s)	159
Mva1269I	GAATGC	1 cut(s)	172
MwoI	GCNNNNNNNGC	2 cut(s)	113, 295
NcoI	CCATGG	1 cut(s)	754
NdeII	GATC	4 cut(s)	199, 621, 657, 832
NlaIII	CATG	2 cut(s)	129, 758
NlaIV	GGNNCC	2 cut(s)	706, 845
NmuCI	GTSAC	4 cut(s)	276, 527, 563, 716
NspI	RCATGY	1 cut(s)	129
PctI	GAATGC	1 cut(s)	172
PfeI	GAWTC	2 cut(s)	628, 785
PleI	GAGTC	2 cut(s)	283, 393
PpsI	GAGTC	2 cut(s)	283, 393
PspFI	CCCAGC	1 cut(s)	107
PspN4I	GGNNCC	2 cut(s)	706, 845
PspPI	GGNCC	6 cut(s)	77, 132, 147, 506, 574, 843
RsaI	GTAC	1 cut(s)	490
RsaNI	GTAC	1 cut(s)	489
RseI	CAYNNNNRTG	1 cut(s)	467
SaqAI	TTAA	4 cut(s)	57, 699, 780, 806
Sau3AI	GATC	4 cut(s)	199, 621, 657, 832
Sau96I	GGNCC	6 cut(s)	77, 132, 147, 506, 574, 843
SchI	GAGTC	2 cut(s)	284, 393
SduI	GDGCHC	2 cut(s)	375, 553
SfaNI	GCATC	1 cut(s)	61
SinI	GGWCC	5 cut(s)	77, 132, 147, 506, 574
SmiMI	CAYNNNNRTG	1 cut(s)	467
SsiI	CCGC	1 cut(s)	116
SspMI	CTAG	2 cut(s)	521, 647
StyI	CCWWGG	1 cut(s)	754
TaaI	ACNGT	3 cut(s)	527, 712, 766
TaiI	ACGT	1 cut(s)	354
TaqI	TCGA	5 cut(s)	303, 365, 423, 437, 681
TfiI	GAWTC	2 cut(s)	628, 785
Tru1I	TTAA	4 cut(s)	57, 699, 780, 806
Tru9I	TTAA	4 cut(s)	57, 699, 780, 806
TscAI	CASTG	3 cut(s)	532, 584, 717
TseFI	GTSAC	4 cut(s)	276, 527, 563, 716
Tsp45I	GTSAC	4 cut(s)	276, 527, 563, 716
TspDTI	ATGAA	2 cut(s)	615, 801
TspRI	CASTG	3 cut(s)	532, 584, 717
VpaK11BI	GGWCC	5 cut(s)	77, 132, 147, 506, 574
XapI	RAATTY	4 cut(s)	306, 407, 587, 672
XceI	RCATGY	1 cut(s)	129
XspI	CTAG	2 cut(s)	521, 647

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.