Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0003070

Physical Location & Seq

Genomic Coordinates Forward (+)

4631876 .. 4633019

Gene Structure 1144 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000026654

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGTCATATTACTTTTCAGATTGGTTCTCTATGGTGAGGGAGTTACAGAGCTCCATTGACATATTCTTGGATGCTGATCTGGACATTAGATGGGTCGGCGATGAGCAAGGCTTCGCCCGAAGCACAAGGTGGTCCACCATTAATTGGAGTTCATTATCAATAGGGAATGCAAGCATTGAAGGCCCACGAGAAGACAAAGGAGGAGGTTTTGGACCTGAAAATGTGCTGGACAGTGACCATTTGTGGACATATTGGGCTCCAAAGGATGGTGACAAAGAGGAGCATTGGATTGAATTTAGAGGCAGAGATAAAGATAAAGAATTGAAATTCAATGTGATTAGGAATCAAGAGGCAATCGGGCTTGGCCAGAGAATCAAAAGGCATGAAATTTATGTGGATGCTAAGAGGGTTGCAAATGGAACCACAGTGGGGTACAAGAGGCTTCACAGACTTGAAGGGGTCCATGGCCAAATTGTCAGAATTATAATTAAAGACTCAAAAGGACTGCTTTTGATTTCTTCCATTGGTCAGCATTTTGATCCCTATTGGGACCAAAGTGGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004560 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006516 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009100 GO:0009987 GO:0015928 GO:0016787 GO:0016798 GO:0019538 GO:0030163 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:1901135 GO:1901136 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00511 map00511

Pfam Domains

Protein Families

Alpha_L_fucos F5_F8_type_C

Protein Analysis

188

Amino Acids

21.59

Weight (kDa)

5.87

Isoelectric Point (pI)

40.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003070)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g28480 FvH4_7g28490
malus_domestica	MD01G1188500.v1.1 MD01G1188600.v1.1
prunus_persica	Prupe.2G285300_v2.0.a1
pyrus_communis	pycom01g20020 pycom01g20030
rosa_chinensis	RchiOBHm_Chr1g0375771 RchiOBHm_Chr1g0375821 RchiOBHm_Chr1g0375841 RchiOBHm_Chr1g0375871
rosa_laevigata	RLG00000026648 RLG00000026649 RLG00000026652 RLG00000026654
rosa_multiflora	Rmu_sc0000487.1_g000052 Rmu_sc0001943.1_g000004 Rmu_sc0001943.1_g000006 Rmu_sc0001943.1_g000007
rosa_roxburghii	Rroxscaffold_4G00282570 Rroxscaffold_4G00282610 Rroxscaffold_4G00282640
rosa_rugosa	Rorug01G0391800 Rorug01G0391900 Rorug01G0392000
rosa_samantha	Rh1AG403600 Rh1AG403700 Rh1AG403800 Rh1BG367200 Rh1BG367300 Rh1CG379800 Rh1CG380000 Rh1CG380100 Rh1DG397200 Rh1DG397300
rosa_wichuraiana	Rw0G000980 Rw0G023580 Rw4G005900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	485
AccB7I	CCANNNNNTGG	2 cut(s)	144, 266
AclWI	GGATC	1 cut(s)	533
AcoI	YGGCCR	2 cut(s)	364, 466
AcsI	RAATTY	3 cut(s)	293, 326, 387
AdeI	CACNNNGTG	1 cut(s)	129
AfaI	GTAC	1 cut(s)	434
AfiI	CCNNNNNNNGG	3 cut(s)	144, 266, 429
AgsI	TTSAA	5 cut(s)	179, 293, 325, 331, 455
AluBI	AGCT	1 cut(s)	51
AluI	AGCT	1 cut(s)	51
Alw21I	GWGCWC	1 cut(s)	53
AlwI	GGATC	1 cut(s)	533
AoxI	GGCC	3 cut(s)	181, 364, 466
ApoI	RAATTY	3 cut(s)	293, 326, 387
AseI	ATTAAT	1 cut(s)	141
AspS9I	GGNCC	5 cut(s)	132, 182, 212, 460, 550
AsuHPI	GGTGA	2 cut(s)	46, 281
AvaII	GGWCC	4 cut(s)	132, 212, 460, 550
BalI	TGGCCA	2 cut(s)	366, 468
BanII	GRGCYC	2 cut(s)	53, 259
BauI	CACGAG	1 cut(s)	186
BbsI	GAAGAC	1 cut(s)	198
Bbv12I	GWGCWC	1 cut(s)	53
BccI	CCATC	2 cut(s)	84, 260
Bme18I	GGWCC	4 cut(s)	132, 212, 460, 550
BmgT120I	GGNCC	5 cut(s)	132, 182, 212, 460, 550
BmiI	GGNNCC	4 cut(s)	258, 421, 461, 551
BmsI	GCATC	2 cut(s)	61, 388
BpiI	GAAGAC	1 cut(s)	198
BsaBI	GATNNNNATC	1 cut(s)	75
BsaJI	CCNNGG	1 cut(s)	463
Bsc4I	CCNNNNNNNGG	3 cut(s)	144, 266, 429
Bse8I	GATNNNNATC	1 cut(s)	75
BseDI	CCNNGG	1 cut(s)	463
BseGI	GGATG	3 cut(s)	76, 271, 403
BseJI	GATNNNNATC	1 cut(s)	75
BseLI	CCNNNNNNNGG	3 cut(s)	144, 266, 429
BseRI	GAGGAG	2 cut(s)	216, 293
BshFI	GGCC	3 cut(s)	183, 366, 468
BsiHKAI	GWGCWC	1 cut(s)	53
BslI	CCNNNNNNNGG	3 cut(s)	144, 266, 429
BsmI	GAATGC	1 cut(s)	172
BsnI	GGCC	3 cut(s)	183, 366, 468
Bsp1286I	GDGCHC	2 cut(s)	53, 259
Bsp143I	GATC	2 cut(s)	76, 538
Bsp19I	CCATGG	1 cut(s)	463
BspANI	GGCC	3 cut(s)	183, 366, 468
BspLI	GGNNCC	4 cut(s)	258, 421, 461, 551
BspPI	GGATC	1 cut(s)	533
BssECI	CCNNGG	1 cut(s)	463
BssMI	GATC	2 cut(s)	76, 538
BssSI	CACGAG	1 cut(s)	186
BssT1I	CCWWGG	1 cut(s)	463
Bst2BI	CACGAG	1 cut(s)	186
Bst4CI	ACNGT	2 cut(s)	233, 427
BstC8I	GCNNGC	1 cut(s)	172
BstDEI	CTNAG	1 cut(s)	402
BstDSI	CCRYGG	1 cut(s)	463
BstF5I	GGATG	3 cut(s)	76, 271, 403
BstKTI	GATC	2 cut(s)	79, 541
BstMBI	GATC	2 cut(s)	76, 538
BstMWI	GCNNNNNNNGC	1 cut(s)	180
BstV2I	GAAGAC	1 cut(s)	198
BsuRI	GGCC	3 cut(s)	183, 366, 468
BtgI	CCRYGG	1 cut(s)	463
BtgZI	GCGATG	1 cut(s)	114
BtsCI	GGATG	3 cut(s)	76, 271, 403
BtsIMutI	CAGTG	2 cut(s)	238, 432
Cac8I	GCNNGC	1 cut(s)	172
Cfr13I	GGNCC	5 cut(s)	132, 182, 212, 460, 550
Csp6I	GTAC	1 cut(s)	433
CviAII	CATG	2 cut(s)	383, 464
CviJI	RGCY	8 cut(s)	51, 111, 183, 257, 361, 366, 442, 468
CviKI_1	RGCY	8 cut(s)	51, 111, 183, 257, 361, 366, 442, 468
CviQI	GTAC	1 cut(s)	433
DdeI	CTNAG	1 cut(s)	402
DpnI	GATC	2 cut(s)	78, 540
DpnII	GATC	2 cut(s)	76, 538
DraIII	CACNNNGTG	1 cut(s)	129
EaeI	YGGCCR	2 cut(s)	364, 466
Ecl136II	GAGCTC	1 cut(s)	51
Eco130I	CCWWGG	1 cut(s)	463
Eco24I	GRGCYC	2 cut(s)	53, 259
Eco47I	GGWCC	4 cut(s)	132, 212, 460, 550
Eco53kI	GAGCTC	1 cut(s)	51
EcoICRI	GAGCTC	1 cut(s)	51
EcoT14I	CCWWGG	1 cut(s)	463
EcoT38I	GRGCYC	2 cut(s)	53, 259
ErhI	CCWWGG	1 cut(s)	463
FaeI	CATG	2 cut(s)	386, 467
FaiI	YATR	8 cut(s)	7, 32, 62, 250, 384, 393, 465, 485
FalI	AAGNNNNNCTT	2 cut(s)	492, 524
FatI	CATG	2 cut(s)	382, 463
FokI	GGATG	3 cut(s)	83, 278, 410
FriOI	GRGCYC	2 cut(s)	53, 259
HaeIII	GGCC	3 cut(s)	183, 366, 468
Hin1II	CATG	2 cut(s)	386, 467
HinfI	GANTC	3 cut(s)	343, 372, 494
HphI	GGTGA	2 cut(s)	46, 281
Hpy166II	GTNNAC	2 cut(s)	135, 246
Hpy188I	TCNGA	2 cut(s)	19, 479
Hpy188III	TCNNGA	2 cut(s)	80, 347
Hpy8I	GTNNAC	2 cut(s)	135, 246
HpyAV	CCTTC	2 cut(s)	173, 449
HpyCH4III	ACNGT	2 cut(s)	233, 427
HpyCH4V	TGCA	2 cut(s)	170, 413
HpyF10VI	GCNNNNNNNGC	1 cut(s)	180
HpyF3I	CTNAG	1 cut(s)	402
Hsp92II	CATG	2 cut(s)	386, 467
Kzo9I	GATC	2 cut(s)	76, 538
LmnI	GCTCC	3 cut(s)	56, 262, 280
LpnPI	CCDG	4 cut(s)	65, 212, 228, 380
LweI	GCATC	2 cut(s)	61, 388
MaeIII	GTNAC	3 cut(s)	42, 233, 269
MalI	GATC	2 cut(s)	78, 540
MboI	GATC	2 cut(s)	76, 538
MboII	GAAGA	2 cut(s)	203, 510
MhlI	GDGCHC	2 cut(s)	53, 259
MlsI	TGGCCA	2 cut(s)	366, 468
MluCI	AATT	8 cut(s)	142, 293, 320, 326, 387, 471, 480, 486
MluNI	TGGCCA	2 cut(s)	366, 468
MlyI	GAGTC	1 cut(s)	488
MnlI	CCTC	8 cut(s)	30, 194, 197, 271, 293, 343, 399, 432
Mox20I	TGGCCA	2 cut(s)	366, 468
MscI	TGGCCA	2 cut(s)	366, 468
MseI	TTAA	2 cut(s)	141, 489
Msp20I	TGGCCA	2 cut(s)	366, 468
Mva1269I	GAATGC	1 cut(s)	172
MwoI	GCNNNNNNNGC	1 cut(s)	180
NcoI	CCATGG	1 cut(s)	463
NdeII	GATC	2 cut(s)	76, 538
NlaIII	CATG	2 cut(s)	386, 467
NlaIV	GGNNCC	4 cut(s)	258, 421, 461, 551
NmuCI	GTSAC	2 cut(s)	233, 269
PctI	GAATGC	1 cut(s)	172
PfeI	GAWTC	2 cut(s)	343, 372
PflMI	CCANNNNNTGG	2 cut(s)	144, 266
PleI	GAGTC	1 cut(s)	488
PpsI	GAGTC	1 cut(s)	488
PshBI	ATTAAT	1 cut(s)	141
PsiI	TTATAA	1 cut(s)	485
Psp124BI	GAGCTC	1 cut(s)	53
PspN4I	GGNNCC	4 cut(s)	258, 421, 461, 551
PspPI	GGNCC	5 cut(s)	132, 182, 212, 460, 550
RsaI	GTAC	1 cut(s)	434
RsaNI	GTAC	1 cut(s)	433
SacI	GAGCTC	1 cut(s)	53
SaqAI	TTAA	2 cut(s)	141, 489
Sau3AI	GATC	2 cut(s)	76, 538
Sau96I	GGNCC	5 cut(s)	132, 182, 212, 460, 550
SchI	GAGTC	1 cut(s)	488
SduI	GDGCHC	2 cut(s)	53, 259
SetI	ASST	4 cut(s)	53, 131, 208, 217
SfaNI	GCATC	2 cut(s)	61, 388
SinI	GGWCC	4 cut(s)	132, 212, 460, 550
Sse9I	AATT	8 cut(s)	142, 293, 320, 326, 387, 471, 480, 486
SstI	GAGCTC	1 cut(s)	53
StyI	CCWWGG	1 cut(s)	463
TaaI	ACNGT	2 cut(s)	233, 427
TasI	AATT	8 cut(s)	142, 293, 320, 326, 387, 471, 480, 486
TfiI	GAWTC	2 cut(s)	343, 372
Tru1I	TTAA	2 cut(s)	141, 489
Tru9I	TTAA	2 cut(s)	141, 489
TscAI	CASTG	2 cut(s)	238, 432
TseFI	GTSAC	2 cut(s)	233, 269
Tsp45I	GTSAC	2 cut(s)	233, 269
TspDTI	ATGAA	2 cut(s)	141, 399
TspRI	CASTG	2 cut(s)	238, 432
Van91I	CCANNNNNTGG	2 cut(s)	144, 266
VpaK11BI	GGWCC	4 cut(s)	132, 212, 460, 550
VspI	ATTAAT	1 cut(s)	141
XapI	RAATTY	3 cut(s)	293, 326, 387

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.