Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003070

Physical Location & Seq

Genomic Coordinates Reverse (-)

63088709 .. 63092341

Gene Structure 3633 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ59945

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGTCTGAGAGTGTAAGAGAAATTTGGTTCGATGGAAATAAGGGTCCGAATGCACCAAACATGTCCTATTACTTTTCAGATTGGTTCTCCATGGTGAGGGAGTTACGTAGCTCCATTAGCATATTCTCGGATGCTGATTCGTACGTTAGATGGGTGGGCGATGAGCAAGGCTTCGCCGGAAGCACAAGCTGGTCCACCATTAATCGGAGTTCATTATCAATAGGACGGCCGAGTTATCTCAACACTAGTGATCCACAAAGAACACACTGGTTGCCGCCCGAATGTGACGTTTCGATAAGAAATGGATGGTTTTGGCACAAATCAGAGTCGCCTAAGAAGCTAAGCAAGCTACTTGAAATTTACTATAACTCAGCAGGAAAAAATTGTGTGCTGTTACTCAATGTGCCTCATAATTCAACTGGAATTATATCTGAAGTAGATGTGAAAAGACTTAAAGATTTGAGAGGTGTAATTGACACAATATTTTCTAGCAACTTAGTTGAAAGATGCTTCATCAAAGGAGTAGCCAAAGAGGAGGCAAAGACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004560 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006516 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009100 GO:0009987 GO:0015928 GO:0016787 GO:0016798 GO:0019538 GO:0030163 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:1901135 GO:1901136 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00511 map00511

Pfam Domains

Protein Families

Alpha_L_fucos F5_F8_type_C

Protein Analysis

182

Amino Acids

20.71

Weight (kDa)

7.7

Isoelectric Point (pI)

54.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003070)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g28480 FvH4_7g28490
malus_domestica	MD01G1188500.v1.1 MD01G1188600.v1.1
prunus_persica	Prupe.2G285300_v2.0.a1
pyrus_communis	pycom01g20020 pycom01g20030
rosa_chinensis	RchiOBHm_Chr1g0375771 RchiOBHm_Chr1g0375821 RchiOBHm_Chr1g0375841 RchiOBHm_Chr1g0375871
rosa_laevigata	RLG00000026648 RLG00000026649 RLG00000026652 RLG00000026654
rosa_multiflora	Rmu_sc0000487.1_g000052 Rmu_sc0001943.1_g000004 Rmu_sc0001943.1_g000006 Rmu_sc0001943.1_g000007
rosa_roxburghii	Rroxscaffold_4G00282570 Rroxscaffold_4G00282610 Rroxscaffold_4G00282640
rosa_rugosa	Rorug01G0391800 Rorug01G0391900 Rorug01G0392000
rosa_samantha	Rh1AG403600 Rh1AG403700 Rh1AG403800 Rh1BG367200 Rh1BG367300 Rh1CG379800 Rh1CG380000 Rh1CG380100 Rh1DG397200 Rh1DG397300
rosa_wichuraiana	Rw0G000980 Rw0G023580 Rw4G005900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	275
AclWI	GGATC	1 cut(s)	245
AcoI	YGGCCR	1 cut(s)	227
AcsI	RAATTY	2 cut(s)	21, 357
AcuI	CTGAAG	1 cut(s)	453
AfaI	GTAC	1 cut(s)	143
AfiI	CCNNNNNNNGG	2 cut(s)	96, 204
AflIII	ACRYGT	1 cut(s)	60
AgsI	TTSAA	3 cut(s)	356, 417, 503
AhlI	ACTAGT	1 cut(s)	245
AluBI	AGCT	4 cut(s)	111, 189, 340, 349
AluI	AGCT	4 cut(s)	111, 189, 340, 349
AlwI	GGATC	1 cut(s)	245
AoxI	GGCC	1 cut(s)	227
ApoI	RAATTY	2 cut(s)	21, 357
AseI	ATTAAT	1 cut(s)	201
AspS9I	GGNCC	2 cut(s)	44, 192
AsuHPI	GGTGA	1 cut(s)	106
AvaII	GGWCC	2 cut(s)	44, 192
BccI	CCATC	3 cut(s)	26, 144, 300
BceAI	ACGGC	1 cut(s)	242
BcuI	ACTAGT	1 cut(s)	245
BfaI	CTAG	2 cut(s)	246, 489
BisI	GCNGC	1 cut(s)	275
BlpI	GCTNAGC	1 cut(s)	341
BlsI	GCNGC	1 cut(s)	276
Bme18I	GGWCC	2 cut(s)	44, 192
BmgT120I	GGNCC	2 cut(s)	44, 192
BmiI	GGNNCC	1 cut(s)	45
BmsI	GCATC	2 cut(s)	121, 497
Bpu1102I	GCTNAGC	1 cut(s)	341
BsaAI	YACGTR	1 cut(s)	107
BsaJI	CCNNGG	1 cut(s)	90
Bsc4I	CCNNNNNNNGG	2 cut(s)	96, 204
Bse1I	ACTGG	2 cut(s)	272, 424
BseDI	CCNNGG	1 cut(s)	90
BseGI	GGATG	2 cut(s)	136, 311
BseLI	CCNNNNNNNGG	2 cut(s)	96, 204
BseMII	CTCAG	1 cut(s)	384
BseNI	ACTGG	2 cut(s)	272, 424
BseRI	GAGGAG	1 cut(s)	548
BseX3I	CGGCCG	1 cut(s)	227
Bsh1285I	CGRYCG	1 cut(s)	230
BshFI	GGCC	1 cut(s)	229
BsiEI	CGRYCG	1 cut(s)	230
BsiSI	CCGG	1 cut(s)	177
BsiWI	CGTACG	1 cut(s)	141
BslI	CCNNNNNNNGG	2 cut(s)	96, 204
BsmI	GAATGC	1 cut(s)	55
BsnI	GGCC	1 cut(s)	229
Bsp143I	GATC	1 cut(s)	250
Bsp1720I	GCTNAGC	1 cut(s)	341
Bsp19I	CCATGG	1 cut(s)	90
BspACI	CCGC	1 cut(s)	275
BspANI	GGCC	1 cut(s)	229
BspCNI	CTCAG	1 cut(s)	383
BspLI	GGNNCC	1 cut(s)	45
BspPI	GGATC	1 cut(s)	245
BsrI	ACTGG	2 cut(s)	272, 424
BssECI	CCNNGG	1 cut(s)	90
BssMI	GATC	1 cut(s)	250
BssT1I	CCWWGG	1 cut(s)	90
BstBAI	YACGTR	1 cut(s)	107
BstC8I	GCNNGC	1 cut(s)	347
BstDEI	CTNAG	5 cut(s)	6, 333, 341, 370, 496
BstDSI	CCRYGG	1 cut(s)	90
BstF5I	GGATG	2 cut(s)	136, 311
BstKTI	GATC	1 cut(s)	253
BstMBI	GATC	1 cut(s)	250
BstMCI	CGRYCG	1 cut(s)	230
BstMWI	GCNNNNNNNGC	3 cut(s)	117, 337, 346
BstNSI	RCATGY	1 cut(s)	64
BstSNI	TACGTA	1 cut(s)	107
BstZI	CGGCCG	1 cut(s)	227
BsuRI	GGCC	1 cut(s)	229
BtgI	CCRYGG	1 cut(s)	90
BtgZI	GCGATG	1 cut(s)	174
BtsCI	GGATG	2 cut(s)	136, 311
BtsIMutI	CAGTG	1 cut(s)	265
Cac8I	GCNNGC	1 cut(s)	347
Cfr13I	GGNCC	2 cut(s)	44, 192
Csp6I	GTAC	1 cut(s)	142
CviAII	CATG	2 cut(s)	61, 91
CviJI	RGCY	7 cut(s)	111, 171, 189, 229, 340, 349, 527
CviKI_1	RGCY	7 cut(s)	111, 171, 189, 229, 340, 349, 527
CviQI	GTAC	1 cut(s)	142
DdeI	CTNAG	5 cut(s)	6, 333, 341, 370, 496
DpnI	GATC	1 cut(s)	252
DpnII	GATC	1 cut(s)	250
EaeI	YGGCCR	1 cut(s)	227
EagI	CGGCCG	1 cut(s)	227
EclXI	CGGCCG	1 cut(s)	227
Eco105I	TACGTA	1 cut(s)	107
Eco130I	CCWWGG	1 cut(s)	90
Eco47I	GGWCC	2 cut(s)	44, 192
Eco52I	CGGCCG	1 cut(s)	227
Eco57I	CTGAAG	1 cut(s)	453
EcoT14I	CCWWGG	1 cut(s)	90
ErhI	CCWWGG	1 cut(s)	90
FaeI	CATG	2 cut(s)	64, 94
FaiI	YATR	6 cut(s)	62, 92, 122, 366, 411, 428
FatI	CATG	2 cut(s)	60, 90
Fnu4HI	GCNGC	1 cut(s)	275
FokI	GGATG	2 cut(s)	143, 318
Fsp4HI	GCNGC	1 cut(s)	275
FspBI	CTAG	2 cut(s)	246, 489
GluI	GCNGC	1 cut(s)	275
HaeIII	GGCC	1 cut(s)	229
HapII	CCGG	1 cut(s)	177
Hin1II	CATG	2 cut(s)	64, 94
HinfI	GANTC	2 cut(s)	137, 326
HpaII	CCGG	1 cut(s)	177
HphI	GGTGA	1 cut(s)	106
Hpy166II	GTNNAC	1 cut(s)	195
Hpy188I	TCNGA	7 cut(s)	7, 48, 79, 130, 207, 325, 433
Hpy8I	GTNNAC	1 cut(s)	195
HpyCH4IV	ACGT	3 cut(s)	106, 144, 288
HpyCH4V	TGCA	1 cut(s)	53
HpyF10VI	GCNNNNNNNGC	3 cut(s)	117, 337, 346
HpyF3I	CTNAG	5 cut(s)	6, 333, 341, 370, 496
HpySE526I	ACGT	3 cut(s)	106, 144, 288
Hsp92II	CATG	2 cut(s)	64, 94
Kzo9I	GATC	1 cut(s)	250
LmnI	GCTCC	1 cut(s)	116
LpnPI	CCDG	5 cut(s)	175, 190, 253, 360, 405
LweI	GCATC	2 cut(s)	121, 497
MaeI	CTAG	2 cut(s)	246, 489
MaeII	ACGT	3 cut(s)	106, 144, 288
MaeIII	GTNAC	3 cut(s)	102, 284, 393
MalI	GATC	1 cut(s)	252
MboI	GATC	1 cut(s)	250
MluCI	AATT	6 cut(s)	21, 357, 382, 412, 423, 471
MlyI	GAGTC	1 cut(s)	335
MnlI	CCTC	5 cut(s)	90, 417, 458, 526, 529
MseI	TTAA	3 cut(s)	201, 453, 547
MspI	CCGG	1 cut(s)	177
Mva1269I	GAATGC	1 cut(s)	55
MwoI	GCNNNNNNNGC	3 cut(s)	117, 337, 346
NcoI	CCATGG	1 cut(s)	90
NdeII	GATC	1 cut(s)	250
NlaIII	CATG	2 cut(s)	64, 94
NlaIV	GGNNCC	1 cut(s)	45
NmeAIII	GCCGAG	1 cut(s)	255
NmuCI	GTSAC	1 cut(s)	284
NspI	RCATGY	1 cut(s)	64
PciI	ACATGT	1 cut(s)	60
PctI	GAATGC	1 cut(s)	55
PfeI	GAWTC	1 cut(s)	137
Pfl23II	CGTACG	1 cut(s)	141
PkrI	GCNGC	1 cut(s)	276
PleI	GAGTC	1 cut(s)	334
PpsI	GAGTC	1 cut(s)	334
Ppu21I	YACGTR	1 cut(s)	107
PscI	ACATGT	1 cut(s)	60
PshBI	ATTAAT	1 cut(s)	201
PspLI	CGTACG	1 cut(s)	141
PspN4I	GGNNCC	1 cut(s)	45
PspPI	GGNCC	2 cut(s)	44, 192
RsaI	GTAC	1 cut(s)	143
RsaNI	GTAC	1 cut(s)	142
SaqAI	TTAA	3 cut(s)	201, 453, 547
SatI	GCNGC	1 cut(s)	275
Sau3AI	GATC	1 cut(s)	250
Sau96I	GGNCC	2 cut(s)	44, 192
SchI	GAGTC	1 cut(s)	335
SetI	ASST	8 cut(s)	109, 113, 147, 191, 291, 342, 351, 469
SfaNI	GCATC	2 cut(s)	121, 497
SinI	GGWCC	2 cut(s)	44, 192
SnaBI	TACGTA	1 cut(s)	107
SpeI	ACTAGT	1 cut(s)	245
Sse9I	AATT	6 cut(s)	21, 357, 382, 412, 423, 471
SsiI	CCGC	1 cut(s)	275
SspI	AATATT	1 cut(s)	483
SspMI	CTAG	2 cut(s)	246, 489
StyI	CCWWGG	1 cut(s)	90
TaiI	ACGT	3 cut(s)	109, 147, 291
TaqI	TCGA	2 cut(s)	30, 293
TasI	AATT	6 cut(s)	21, 357, 382, 412, 423, 471
TauI	GCSGC	1 cut(s)	277
TfiI	GAWTC	1 cut(s)	137
Tru1I	TTAA	3 cut(s)	201, 453, 547
Tru9I	TTAA	3 cut(s)	201, 453, 547
TscAI	CASTG	1 cut(s)	272
TseFI	GTSAC	1 cut(s)	284
Tsp45I	GTSAC	1 cut(s)	284
TspDTI	ATGAA	2 cut(s)	201, 502
TspRI	CASTG	1 cut(s)	272
VpaK11BI	GGWCC	2 cut(s)	44, 192
VspI	ATTAAT	1 cut(s)	201
XapI	RAATTY	2 cut(s)	21, 357
XceI	RCATGY	1 cut(s)	64
XspI	CTAG	2 cut(s)	246, 489

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.