Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001943.1

Orthogroup ID

OG0003070

Physical Location & Seq

Genomic Coordinates Reverse (-)

28733 .. 29920

Gene Structure 1188 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001943.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

atgtcctattacttttcagattggttctccatggtgagggagttacagagctccattaacatattctcggatgctgatccggttgttagatgggttggcgatgagcaaggcttcaccagaagcacaagctggtccaccattaatcggagttcattatcaattgagaatgcaagcattgaaggttatctcaacactgatgatccacaaggaacagactgcttgccgccagaatgtgacgtttcgataagaaatggatggttttggcacaaatcagagtcgcctaagaagctaagcaagctacttgaaatttactataactcggaagtcagttgggttaaaacccagccttttgggtcagtccctcaaacgacgtcgttcagacgtctcttttctctcggcttcgtcttcagcgatcgaccgccgtccttccctccagacccagatcgttccatcctcaggtcgtcgtcccttgctcggaccgtcgtctctctagtccagattggcctcgtctcttgcccagaccgccttcgtctgcctctgtctccgacaccagagagctatctcttcagttcgttctccggctgtgccttgactcaacccaaaccagtccggccacctgaaccatctccggccgtgctctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004560 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006516 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009100 GO:0009987 GO:0015928 GO:0016787 GO:0016798 GO:0019538 GO:0030163 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:1901135 GO:1901136 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00511 map00511

Pfam Domains

Protein Families

Alpha_L_fucos F5_F8_type_C

Protein Analysis

213

Amino Acids

23.96

Weight (kDa)

5.49

Isoelectric Point (pI)

78.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003070)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g28480 FvH4_7g28490
malus_domestica	MD01G1188500.v1.1 MD01G1188600.v1.1
prunus_persica	Prupe.2G285300_v2.0.a1
pyrus_communis	pycom01g20020 pycom01g20030
rosa_chinensis	RchiOBHm_Chr1g0375771 RchiOBHm_Chr1g0375821 RchiOBHm_Chr1g0375841 RchiOBHm_Chr1g0375871
rosa_laevigata	RLG00000026648 RLG00000026649 RLG00000026652 RLG00000026654
rosa_multiflora	Rmu_sc0000487.1_g000052 Rmu_sc0001943.1_g000004 Rmu_sc0001943.1_g000006 Rmu_sc0001943.1_g000007
rosa_roxburghii	Rroxscaffold_4G00282570 Rroxscaffold_4G00282610 Rroxscaffold_4G00282640
rosa_rugosa	Rorug01G0391800 Rorug01G0391900 Rorug01G0392000
rosa_samantha	Rh1AG403600 Rh1AG403700 Rh1AG403800 Rh1BG367200 Rh1BG367300 Rh1CG379800 Rh1CG380000 Rh1CG380100 Rh1DG397200 Rh1DG397300
rosa_wichuraiana	Rw0G000980 Rw0G023580 Rw4G005900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	374, 385
AciI	CCGC	3 cut(s)	224, 419, 523
AclWI	GGATC	2 cut(s)	71, 194
AcoI	YGGCCR	2 cut(s)	611, 630
AcsI	RAATTY	1 cut(s)	306
AcuI	CTGAAG	2 cut(s)	391, 550
AcyI	GRCGYC	2 cut(s)	371, 382
AfiI	CCNNNNNNNGG	4 cut(s)	36, 144, 456, 474
AgsI	TTSAA	2 cut(s)	179, 305
AluBI	AGCT	5 cut(s)	51, 129, 289, 298, 558
AluI	AGCT	5 cut(s)	51, 129, 289, 298, 558
Alw21I	GWGCWC	2 cut(s)	53, 639
Alw26I	GTCTC	4 cut(s)	389, 490, 514, 546
AlwI	GGATC	2 cut(s)	71, 194
AoxI	GGCC	3 cut(s)	502, 611, 630
ApoI	RAATTY	1 cut(s)	306
AseI	ATTAAT	1 cut(s)	141
AspS9I	GGNCC	2 cut(s)	132, 477
AsuHPI	GGTGA	2 cut(s)	46, 106
AvaII	GGWCC	2 cut(s)	132, 477
AxyI	CCTNAGG	1 cut(s)	455
BanII	GRGCYC	1 cut(s)	53
BbsI	GAAGAC	1 cut(s)	397
Bbv12I	GWGCWC	2 cut(s)	53, 639
BccI	CCATC	4 cut(s)	84, 249, 458, 631
BceAI	ACGGC	2 cut(s)	406, 617
BcoDI	GTCTC	4 cut(s)	389, 490, 514, 546
BfaI	CTAG	2 cut(s)	491, 640
BisI	GCNGC	1 cut(s)	224
BlpI	GCTNAGC	1 cut(s)	290
BlsI	GCNGC	1 cut(s)	225
Bme18I	GGWCC	2 cut(s)	132, 477
BmgT120I	GGNCC	2 cut(s)	132, 477
BmsI	GCATC	1 cut(s)	61
BoxI	GACNNNNGTC	2 cut(s)	421, 482
BpiI	GAAGAC	1 cut(s)	397
BpmI	CTGGAG	1 cut(s)	417
Bpu1102I	GCTNAGC	1 cut(s)	290
BsaBI	GATNNNNATC	1 cut(s)	75
BsaHI	GRCGYC	2 cut(s)	371, 382
BsaJI	CCNNGG	1 cut(s)	30
BsaWI	WCCGGW	1 cut(s)	79
Bsc4I	CCNNNNNNNGG	4 cut(s)	36, 144, 456, 474
Bse1I	ACTGG	1 cut(s)	605
Bse21I	CCTNAGG	1 cut(s)	455
Bse8I	GATNNNNATC	1 cut(s)	75
BseDI	CCNNGG	1 cut(s)	30
BseGI	GGATG	3 cut(s)	76, 260, 450
BseJI	GATNNNNATC	1 cut(s)	75
BseLI	CCNNNNNNNGG	4 cut(s)	36, 144, 456, 474
BseMII	CTCAG	1 cut(s)	469
BseNI	ACTGG	1 cut(s)	605
BseX3I	CGGCCG	1 cut(s)	630
BseYI	CCCAGC	1 cut(s)	342
Bsh1285I	CGRYCG	3 cut(s)	415, 419, 633
BshFI	GGCC	3 cut(s)	504, 613, 632
BsiEI	CGRYCG	3 cut(s)	415, 419, 633
BsiHKAI	GWGCWC	2 cut(s)	53, 639
BsiSI	CCGG	4 cut(s)	80, 579, 610, 629
BslFI	GGGAC	2 cut(s)	344, 451
BslI	CCNNNNNNNGG	4 cut(s)	36, 144, 456, 474
BsmAI	GTCTC	4 cut(s)	389, 490, 514, 546
BsmBI	CGTCTC	3 cut(s)	389, 490, 514
BsmFI	GGGAC	2 cut(s)	344, 451
BsmI	GAATGC	1 cut(s)	172
BsnI	GGCC	3 cut(s)	504, 613, 632
Bsp1286I	GDGCHC	2 cut(s)	53, 639
Bsp143I	GATC	4 cut(s)	76, 199, 412, 442
Bsp1720I	GCTNAGC	1 cut(s)	290
Bsp19I	CCATGG	1 cut(s)	30
BspACI	CCGC	3 cut(s)	224, 419, 523
BspANI	GGCC	3 cut(s)	504, 613, 632
BspCNI	CTCAG	1 cut(s)	468
BspPI	GGATC	2 cut(s)	71, 194
BsrI	ACTGG	1 cut(s)	605
BssECI	CCNNGG	1 cut(s)	30
BssMI	GATC	4 cut(s)	76, 199, 412, 442
BssNI	GRCGYC	2 cut(s)	371, 382
BssT1I	CCWWGG	1 cut(s)	30
Bst4CI	ACNGT	1 cut(s)	481
Bst6I	CTCTTC	1 cut(s)	569
BstACI	GRCGYC	2 cut(s)	371, 382
BstC8I	GCNNGC	3 cut(s)	172, 221, 296
BstDEI	CTNAG	3 cut(s)	282, 290, 455
BstDSI	CCRYGG	1 cut(s)	30
BstF5I	GGATG	3 cut(s)	76, 260, 450
BstKTI	GATC	4 cut(s)	79, 202, 415, 445
BstMAI	GTCTC	4 cut(s)	389, 490, 514, 546
BstMBI	GATC	4 cut(s)	76, 199, 412, 442
BstMCI	CGRYCG	3 cut(s)	415, 419, 633
BstMWI	GCNNNNNNNGC	3 cut(s)	286, 295, 522
BstPAI	GACNNNNGTC	2 cut(s)	421, 482
BstV2I	GAAGAC	1 cut(s)	397
BstXI	CCANNNNNNTGG	1 cut(s)	350
BstZI	CGGCCG	1 cut(s)	630
Bsu36I	CCTNAGG	1 cut(s)	455
BsuRI	GGCC	3 cut(s)	504, 613, 632
BtgI	CCRYGG	1 cut(s)	30
BtgZI	GCGATG	1 cut(s)	114
BtsCI	GGATG	3 cut(s)	76, 260, 450
BtsIMutI	CAGTG	1 cut(s)	192
Cac8I	GCNNGC	3 cut(s)	172, 221, 296
Cfr13I	GGNCC	2 cut(s)	132, 477
CpoI	CGGWCCG	1 cut(s)	477
CspI	CGGWCCG	1 cut(s)	477
CviAII	CATG	1 cut(s)	31
DdeI	CTNAG	3 cut(s)	282, 290, 455
DpnI	GATC	4 cut(s)	78, 201, 414, 444
DpnII	GATC	4 cut(s)	76, 199, 412, 442
EaeI	YGGCCR	2 cut(s)	611, 630
EagI	CGGCCG	1 cut(s)	630
Eam1104I	CTCTTC	1 cut(s)	569
EarI	CTCTTC	1 cut(s)	569
Ecl136II	GAGCTC	1 cut(s)	51
EclXI	CGGCCG	1 cut(s)	630
Eco130I	CCWWGG	1 cut(s)	30
Eco24I	GRGCYC	1 cut(s)	53
Eco47I	GGWCC	2 cut(s)	132, 477
Eco52I	CGGCCG	1 cut(s)	630
Eco53kI	GAGCTC	1 cut(s)	51
Eco57I	CTGAAG	2 cut(s)	391, 550
Eco81I	CCTNAGG	1 cut(s)	455
EcoICRI	GAGCTC	1 cut(s)	51
EcoT14I	CCWWGG	1 cut(s)	30
EcoT38I	GRGCYC	1 cut(s)	53
ErhI	CCWWGG	1 cut(s)	30
Esp3I	CGTCTC	3 cut(s)	389, 490, 514
FaeI	CATG	1 cut(s)	34
FaiI	YATR	3 cut(s)	32, 62, 315
FaqI	GGGAC	2 cut(s)	344, 451
FatI	CATG	1 cut(s)	30
Fnu4HI	GCNGC	1 cut(s)	224
FokI	GGATG	3 cut(s)	83, 267, 437
FriOI	GRGCYC	1 cut(s)	53
Fsp4HI	GCNGC	1 cut(s)	224
FspBI	CTAG	2 cut(s)	491, 640
GluI	GCNGC	1 cut(s)	224
GsaI	CCCAGC	1 cut(s)	346
GsuI	CTGGAG	1 cut(s)	417
HaeIII	GGCC	3 cut(s)	504, 613, 632
HapII	CCGG	4 cut(s)	80, 579, 610, 629
Hin1I	GRCGYC	2 cut(s)	371, 382
Hin1II	CATG	1 cut(s)	34
HinfI	GANTC	2 cut(s)	275, 592
HpaII	CCGG	4 cut(s)	80, 579, 610, 629
HphI	GGTGA	2 cut(s)	46, 106
Hpy166II	GTNNAC	1 cut(s)	135
Hpy188I	TCNGA	8 cut(s)	19, 70, 147, 274, 322, 380, 477, 546
Hpy188III	TCNNGA	2 cut(s)	434, 496
Hpy8I	GTNNAC	1 cut(s)	135
Hpy99I	CGWCG	4 cut(s)	373, 376, 466, 485
HpyAV	CCTTC	3 cut(s)	173, 436, 536
HpyCH4III	ACNGT	1 cut(s)	481
HpyCH4IV	ACGT	3 cut(s)	237, 371, 382
HpyCH4V	TGCA	1 cut(s)	170
HpyF10VI	GCNNNNNNNGC	3 cut(s)	286, 295, 522
HpyF3I	CTNAG	3 cut(s)	282, 290, 455
HpySE526I	ACGT	3 cut(s)	237, 371, 382
Hsp92I	GRCGYC	2 cut(s)	371, 382
Hsp92II	CATG	1 cut(s)	34
Kzo9I	GATC	4 cut(s)	76, 199, 412, 442
LmnI	GCTCC	1 cut(s)	56
LweI	GCATC	1 cut(s)	61
MaeI	CTAG	2 cut(s)	491, 640
MaeII	ACGT	3 cut(s)	237, 371, 382
MaeIII	GTNAC	2 cut(s)	42, 233
MalI	GATC	4 cut(s)	78, 201, 414, 444
MboI	GATC	4 cut(s)	76, 199, 412, 442
MboII	GAAGA	2 cut(s)	397, 556
MfeI	CAATTG	1 cut(s)	159
MhlI	GDGCHC	2 cut(s)	53, 639
MluCI	AATT	2 cut(s)	159, 306
MlyI	GAGTC	2 cut(s)	284, 586
MmeI	TCCRAC	1 cut(s)	569
MnlI	CCTC	6 cut(s)	30, 372, 441, 464, 515, 546
MseI	TTAA	3 cut(s)	57, 141, 336
MspI	CCGG	4 cut(s)	80, 579, 610, 629
MunI	CAATTG	1 cut(s)	159
Mva1269I	GAATGC	1 cut(s)	172
MwoI	GCNNNNNNNGC	3 cut(s)	286, 295, 522
NcoI	CCATGG	1 cut(s)	30
NdeII	GATC	4 cut(s)	76, 199, 412, 442
NlaIII	CATG	1 cut(s)	34
NmeAIII	GCCGAG	1 cut(s)	375
NmuCI	GTSAC	1 cut(s)	233
PcsI	WCGNNNNNNNCGW	1 cut(s)	408
PctI	GAATGC	1 cut(s)	172
PkrI	GCNGC	1 cut(s)	225
Ple19I	CGATCG	1 cut(s)	415
PleI	GAGTC	2 cut(s)	283, 586
PpsI	GAGTC	2 cut(s)	283, 586
PshAI	GACNNNNGTC	2 cut(s)	421, 482
PshBI	ATTAAT	1 cut(s)	141
Psp124BI	GAGCTC	1 cut(s)	53
PspFI	CCCAGC	1 cut(s)	342
PspPI	GGNCC	2 cut(s)	132, 477
PvuI	CGATCG	1 cut(s)	415
Rsr2I	CGGWCCG	1 cut(s)	477
RsrII	CGGWCCG	1 cut(s)	477
SacI	GAGCTC	1 cut(s)	53
SaqAI	TTAA	3 cut(s)	57, 141, 336
SatI	GCNGC	1 cut(s)	224
Sau3AI	GATC	4 cut(s)	76, 199, 412, 442
Sau96I	GGNCC	2 cut(s)	132, 477
SchI	GAGTC	2 cut(s)	284, 586
SduI	GDGCHC	2 cut(s)	53, 639
SfaNI	GCATC	1 cut(s)	61
SinI	GGWCC	2 cut(s)	132, 477
Sse9I	AATT	2 cut(s)	159, 306
SsiI	CCGC	3 cut(s)	224, 419, 523
SspMI	CTAG	2 cut(s)	491, 640
SstI	GAGCTC	1 cut(s)	53
StyI	CCWWGG	1 cut(s)	30
TaaI	ACNGT	1 cut(s)	481
TaiI	ACGT	3 cut(s)	240, 374, 385
TaqI	TCGA	2 cut(s)	242, 415
TasI	AATT	2 cut(s)	159, 306
TauI	GCSGC	1 cut(s)	226
Tru1I	TTAA	3 cut(s)	57, 141, 336
Tru9I	TTAA	3 cut(s)	57, 141, 336
TscAI	CASTG	1 cut(s)	199
TseFI	GTSAC	1 cut(s)	233
Tsp45I	GTSAC	1 cut(s)	233
TspDTI	ATGAA	1 cut(s)	141
TspRI	CASTG	1 cut(s)	199
VpaK11BI	GGWCC	2 cut(s)	132, 477
VspI	ATTAAT	1 cut(s)	141
XapI	RAATTY	1 cut(s)	306
XspI	CTAG	2 cut(s)	491, 640
ZraI	GACGTC	2 cut(s)	372, 383

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.