Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0003070

Physical Location & Seq

Genomic Coordinates Forward (+)

4595382 .. 4603922

Gene Structure 8541 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000026652

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGACGTCGGGCTTTTTCTGTCCCCGTGGGATAGGCATGGCTGGAGATACGGTCAGGAGGTACGGGAGTCTAAGAGAAATTTGGTTCGATGGAAATAAGGGTCCGAATGCACCAAACATGTCCTATTACTTTTCAGATTGGTTCTCCATGGTGAGGGAATGGGTTGGCGATGAGCAAGGCTTTGCCGGAAGCACAAGCTGGTCCACCATTAATCGGAGTTCATTATCAATTGAGAATGCAAGCATTGAAGGAATGACATTTCTAAATCACCACCTAATTCGATTTACTCCAAATGAATGCAATTATCTCAACACTGATGATCCACAAGGAACAGACTGGTTGCCGCCAGAAGGTGACGTTTTGATAAGAAATGGATGGTTTTGGCACAAATTAGATTCGCCTAAGAAGCTAAGCAAGCTACTTGAAATTTACTATAACTCAGTAGGAAGAAATTGTGTGTTGTTACTCAATGTGCCCCATAATTCAACCAGACTTATATCCGAAGTAGATGTGAAAAGACTTAGAGATTTGAGAGGTGCAATTGACACAATATTTTCTAGCAACTTAGCTGAAAGATGCTTCATCAAAGTGAGTAGCCAAAGAGGAGGCAAAGGAGGAGGTTTTGGACCTGAAAATGCTCCAAAGGATGGTGACAAGGAGGAGCATTGGATTGAATTTAGAGGCAGAGATAAAGATAAAGGATTGATGTTCAATGAGATTAGGATTCAAGAGGCAATCGGACTTGGCCAGAGAATCAAAAGGCATGCAATTTATGTGGCTGATAAGAGGGTTGCAAATGGAACCACTGTGGGGTACAAGAGGCTAGGGGTGGGCGCGGTGCAGTTCGGTTCGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004560 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006516 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009100 GO:0009987 GO:0015928 GO:0016787 GO:0016798 GO:0019538 GO:0030163 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:1901135 GO:1901136 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00511 map00511

Pfam Domains

Protein Families

Alpha_L_fucos F5_F8_type_C

Protein Analysis

286

Amino Acids

32.12

Weight (kDa)

8.82

Isoelectric Point (pI)

38.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003070)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g28480 FvH4_7g28490
malus_domestica	MD01G1188500.v1.1 MD01G1188600.v1.1
prunus_persica	Prupe.2G285300_v2.0.a1
pyrus_communis	pycom01g20020 pycom01g20030
rosa_chinensis	RchiOBHm_Chr1g0375771 RchiOBHm_Chr1g0375821 RchiOBHm_Chr1g0375841 RchiOBHm_Chr1g0375871
rosa_laevigata	RLG00000026648 RLG00000026649 RLG00000026652 RLG00000026654
rosa_multiflora	Rmu_sc0000487.1_g000052 Rmu_sc0001943.1_g000004 Rmu_sc0001943.1_g000006 Rmu_sc0001943.1_g000007
rosa_roxburghii	Rroxscaffold_4G00282570 Rroxscaffold_4G00282610 Rroxscaffold_4G00282640
rosa_rugosa	Rorug01G0391800 Rorug01G0391900 Rorug01G0392000
rosa_samantha	Rh1AG403600 Rh1AG403700 Rh1AG403800 Rh1BG367200 Rh1BG367300 Rh1CG379800 Rh1CG380000 Rh1CG380100 Rh1DG397200 Rh1DG397300
rosa_wichuraiana	Rw0G000980 Rw0G023580 Rw4G005900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	8
AccB7I	CCANNNNNTGG	1 cut(s)	647
AccII	CGCG	1 cut(s)	836
AciI	CCGC	2 cut(s)	344, 836
AclWI	GGATC	1 cut(s)	314
AcoI	YGGCCR	1 cut(s)	745
AcsI	RAATTY	3 cut(s)	78, 426, 674
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	2 cut(s)	62, 815
AfiI	CCNNNNNNNGG	5 cut(s)	153, 213, 350, 647, 810
AflIII	ACRYGT	1 cut(s)	117
AgsI	TTSAA	6 cut(s)	248, 425, 486, 674, 712, 728
AluBI	AGCT	4 cut(s)	198, 409, 418, 569
AluI	AGCT	4 cut(s)	198, 409, 418, 569
AlwI	GGATC	1 cut(s)	314
AoxI	GGCC	1 cut(s)	745
ApoI	RAATTY	3 cut(s)	78, 426, 674
AseI	ATTAAT	1 cut(s)	210
AspLEI	GCGC	1 cut(s)	836
AspS9I	GGNCC	3 cut(s)	101, 201, 626
AsuHPI	GGTGA	4 cut(s)	163, 260, 365, 662
AvaII	GGWCC	3 cut(s)	101, 201, 626
BaeGI	GKGCMC	1 cut(s)	477
BaeI	ACNNNNGTAYC	2 cut(s)	52, 85
BalI	TGGCCA	1 cut(s)	747
BccI	CCATC	3 cut(s)	83, 369, 641
BfaI	CTAG	2 cut(s)	558, 824
BisI	GCNGC	1 cut(s)	344
BlpI	GCTNAGC	1 cut(s)	410
BlsI	GCNGC	1 cut(s)	345
Bme18I	GGWCC	3 cut(s)	101, 201, 626
BmgT120I	GGNCC	3 cut(s)	101, 201, 626
BmiI	GGNNCC	2 cut(s)	102, 802
BmsI	GCATC	1 cut(s)	566
BpmI	CTGGAG	1 cut(s)	63
Bpu1102I	GCTNAGC	1 cut(s)	410
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	2 cut(s)	25, 147
BsaXI	ACNNNNNCTCC	2 cut(s)	36, 66
Bsc4I	CCNNNNNNNGG	5 cut(s)	153, 213, 350, 647, 810
Bse1I	ACTGG	1 cut(s)	341
BseDI	CCNNGG	2 cut(s)	25, 147
BseGI	GGATG	2 cut(s)	380, 652
BseLI	CCNNNNNNNGG	5 cut(s)	153, 213, 350, 647, 810
BseMII	CTCAG	1 cut(s)	453
BseNI	ACTGG	1 cut(s)	341
BseRI	GAGGAG	3 cut(s)	618, 630, 674
BseSI	GKGCMC	1 cut(s)	477
Bsh1236I	CGCG	1 cut(s)	836
BshFI	GGCC	1 cut(s)	747
BsiSI	CCGG	1 cut(s)	186
BslFI	GGGAC	1 cut(s)	6
BslI	CCNNNNNNNGG	5 cut(s)	153, 213, 350, 647, 810
BsmFI	GGGAC	1 cut(s)	6
BsmI	GAATGC	3 cut(s)	112, 241, 302
BsnI	GGCC	1 cut(s)	747
Bsp1286I	GDGCHC	1 cut(s)	477
Bsp143I	GATC	1 cut(s)	319
Bsp1720I	GCTNAGC	1 cut(s)	410
Bsp19I	CCATGG	1 cut(s)	147
BspACI	CCGC	2 cut(s)	344, 836
BspANI	GGCC	1 cut(s)	747
BspCNI	CTCAG	1 cut(s)	452
BspFNI	CGCG	1 cut(s)	836
BspLI	GGNNCC	2 cut(s)	102, 802
BspPI	GGATC	1 cut(s)	314
BsrI	ACTGG	1 cut(s)	341
BssECI	CCNNGG	2 cut(s)	25, 147
BssMI	GATC	1 cut(s)	319
BssNI	GRCGYC	1 cut(s)	5
BssT1I	CCWWGG	1 cut(s)	147
Bst4CI	ACNGT	2 cut(s)	52, 808
BstACI	GRCGYC	1 cut(s)	5
BstC8I	GCNNGC	3 cut(s)	241, 416, 765
BstDEI	CTNAG	6 cut(s)	71, 402, 410, 439, 521, 565
BstDSI	CCRYGG	2 cut(s)	25, 147
BstF5I	GGATG	2 cut(s)	380, 652
BstFNI	CGCG	1 cut(s)	836
BstHHI	GCGC	1 cut(s)	836
BstKTI	GATC	1 cut(s)	322
BstMBI	GATC	1 cut(s)	319
BstMWI	GCNNNNNNNGC	2 cut(s)	406, 415
BstNSI	RCATGY	2 cut(s)	121, 767
BstSLI	GKGCMC	1 cut(s)	477
BstUI	CGCG	1 cut(s)	836
BsuRI	GGCC	1 cut(s)	747
BtgI	CCRYGG	2 cut(s)	25, 147
BtgZI	GCGATG	1 cut(s)	183
BtsCI	GGATG	2 cut(s)	380, 652
BtsIMutI	CAGTG	2 cut(s)	312, 804
Cac8I	GCNNGC	3 cut(s)	241, 416, 765
CfoI	GCGC	1 cut(s)	836
Cfr13I	GGNCC	3 cut(s)	101, 201, 626
Csp6I	GTAC	2 cut(s)	61, 814
CspCI	CAANNNNNGTGG	2 cut(s)	756, 791
CviAII	CATG	4 cut(s)	37, 118, 148, 764
CviQI	GTAC	2 cut(s)	61, 814
DdeI	CTNAG	6 cut(s)	71, 402, 410, 439, 521, 565
DpnI	GATC	1 cut(s)	321
DpnII	GATC	1 cut(s)	319
EaeI	YGGCCR	1 cut(s)	745
Eco130I	CCWWGG	1 cut(s)	147
Eco47I	GGWCC	3 cut(s)	101, 201, 626
EcoT14I	CCWWGG	1 cut(s)	147
ErhI	CCWWGG	1 cut(s)	147
FaeI	CATG	4 cut(s)	40, 121, 151, 767
FaiI	YATR	8 cut(s)	38, 119, 149, 435, 480, 497, 765, 774
FaqI	GGGAC	1 cut(s)	6
FatI	CATG	4 cut(s)	36, 117, 147, 763
Fnu4HI	GCNGC	1 cut(s)	344
FokI	GGATG	2 cut(s)	387, 659
Fsp4HI	GCNGC	1 cut(s)	344
FspBI	CTAG	2 cut(s)	558, 824
GlaI	GCGC	1 cut(s)	835
GluI	GCNGC	1 cut(s)	344
GsuI	CTGGAG	1 cut(s)	63
HaeIII	GGCC	1 cut(s)	747
HapII	CCGG	1 cut(s)	186
HhaI	GCGC	1 cut(s)	836
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	4 cut(s)	40, 121, 151, 767
Hin6I	GCGC	1 cut(s)	834
HinP1I	GCGC	1 cut(s)	834
HinfI	GANTC	4 cut(s)	67, 395, 724, 753
HpaII	CCGG	1 cut(s)	186
HphI	GGTGA	4 cut(s)	163, 260, 365, 662
Hpy166II	GTNNAC	1 cut(s)	204
Hpy188I	TCNGA	5 cut(s)	105, 136, 216, 502, 740
Hpy188III	TCNNGA	2 cut(s)	55, 728
Hpy8I	GTNNAC	1 cut(s)	204
Hpy99I	CGWCG	1 cut(s)	10
HpyAV	CCTTC	2 cut(s)	242, 344
HpyCH4III	ACNGT	2 cut(s)	52, 808
HpyCH4IV	ACGT	2 cut(s)	5, 357
HpyCH4V	TGCA	7 cut(s)	110, 239, 300, 539, 767, 794, 841
HpyF10VI	GCNNNNNNNGC	2 cut(s)	406, 415
HpyF3I	CTNAG	6 cut(s)	71, 402, 410, 439, 521, 565
HpySE526I	ACGT	2 cut(s)	5, 357
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	4 cut(s)	40, 121, 151, 767
HspAI	GCGC	1 cut(s)	834
Kzo9I	GATC	1 cut(s)	319
LmnI	GCTCC	2 cut(s)	643, 661
LpnPI	CCDG	9 cut(s)	27, 40, 184, 199, 322, 360, 502, 642, 761
LweI	GCATC	1 cut(s)	566
MaeI	CTAG	2 cut(s)	558, 824
MaeII	ACGT	2 cut(s)	5, 357
MaeIII	GTNAC	3 cut(s)	353, 462, 650
MalI	GATC	1 cut(s)	321
MboI	GATC	1 cut(s)	319
MboII	GAAGA	1 cut(s)	459
MfeI	CAATTG	2 cut(s)	228, 540
MhlI	GDGCHC	1 cut(s)	477
MlsI	TGGCCA	1 cut(s)	747
MluNI	TGGCCA	1 cut(s)	747
MlyI	GAGTC	1 cut(s)	76
Mox20I	TGGCCA	1 cut(s)	747
MscI	TGGCCA	1 cut(s)	747
MseI	TTAA	1 cut(s)	210
MslI	CAYNNNNRTG	1 cut(s)	587
Msp20I	TGGCCA	1 cut(s)	747
MspI	CCGG	1 cut(s)	186
MunI	CAATTG	2 cut(s)	228, 540
Mva1269I	GAATGC	3 cut(s)	112, 241, 302
MvnI	CGCG	1 cut(s)	836
MwoI	GCNNNNNNNGC	2 cut(s)	406, 415
NcoI	CCATGG	1 cut(s)	147
NdeII	GATC	1 cut(s)	319
NlaIII	CATG	4 cut(s)	40, 121, 151, 767
NlaIV	GGNNCC	2 cut(s)	102, 802
NmuCI	GTSAC	2 cut(s)	353, 650
NspI	RCATGY	2 cut(s)	121, 767
PaeI	GCATGC	1 cut(s)	767
PciI	ACATGT	1 cut(s)	117
PctI	GAATGC	3 cut(s)	112, 241, 302
PfeI	GAWTC	3 cut(s)	395, 724, 753
PflMI	CCANNNNNTGG	1 cut(s)	647
PkrI	GCNGC	1 cut(s)	345
PleI	GAGTC	1 cut(s)	75
PpsI	GAGTC	1 cut(s)	75
PscI	ACATGT	1 cut(s)	117
PshBI	ATTAAT	1 cut(s)	210
PspN4I	GGNNCC	2 cut(s)	102, 802
PspPI	GGNCC	3 cut(s)	101, 201, 626
RsaI	GTAC	2 cut(s)	62, 815
RsaNI	GTAC	2 cut(s)	61, 814
RseI	CAYNNNNRTG	1 cut(s)	587
SaqAI	TTAA	1 cut(s)	210
SatI	GCNGC	1 cut(s)	344
Sau3AI	GATC	1 cut(s)	319
Sau96I	GGNCC	3 cut(s)	101, 201, 626
SchI	GAGTC	1 cut(s)	76
SduI	GDGCHC	1 cut(s)	477
SfaNI	GCATC	1 cut(s)	566
SinI	GGWCC	3 cut(s)	101, 201, 626
SmiMI	CAYNNNNRTG	1 cut(s)	587
SphI	GCATGC	1 cut(s)	767
SsiI	CCGC	2 cut(s)	344, 836
SspI	AATATT	1 cut(s)	552
SspMI	CTAG	2 cut(s)	558, 824
StyI	CCWWGG	1 cut(s)	147
TaaI	ACNGT	2 cut(s)	52, 808
TaiI	ACGT	2 cut(s)	8, 360
TaqI	TCGA	2 cut(s)	87, 280
TauI	GCSGC	1 cut(s)	346
TfiI	GAWTC	3 cut(s)	395, 724, 753
Tru1I	TTAA	1 cut(s)	210
Tru9I	TTAA	1 cut(s)	210
TscAI	CASTG	2 cut(s)	319, 811
TseFI	GTSAC	2 cut(s)	353, 650
Tsp45I	GTSAC	2 cut(s)	353, 650
TspDTI	ATGAA	3 cut(s)	210, 309, 571
TspRI	CASTG	2 cut(s)	319, 811
Van91I	CCANNNNNTGG	1 cut(s)	647
VpaK11BI	GGWCC	3 cut(s)	101, 201, 626
VspI	ATTAAT	1 cut(s)	210
XapI	RAATTY	3 cut(s)	78, 426, 674
XceI	RCATGY	2 cut(s)	121, 767
XspI	CTAG	2 cut(s)	558, 824
ZraI	GACGTC	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.