Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001943.1

Orthogroup ID

OG0003070

Physical Location & Seq

Genomic Coordinates Reverse (-)

40106 .. 41717

Gene Structure 1612 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001943.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1164 bp

atgttcctccattttggagtgaacacattcactggccttgagcgtggcaccgggcttgaaaacccagccatattcaacccagttgcgcttgatgcgagccaatggatgagtgtagcagaagatgcaggcatatcactaatgatacttactgcaaagcaccatgatgggttttgcttgtggccttctaagtacactgaccattctgtggaaagaagtccttggaaaaatggccatggcgatgttgttcaggagttggttaatgcggctaagccccgtgggattgacgttgggctgtatctctctgcctgggacagacatgatcgcagatatgggctggagaagccatataacgaatactacttggctcagttacaagagctactcaatagatgggttggaaatgaggctgggtttgcggggaaaacatgctggtccaccatcaatcggacctcgttatcaattgggaatgcaagcaatgaggattatctcaacaaaggtgatccaaaagggacagattggttgccagcagagtgcgatgtctcaatcagaaaaggatggttttggcatagttcagagtcacctaagaagctaagccagctactcgaaatttactataactcagtaggacgaaatgctgtgttactactcaccgtgcctcctaattcgacagggctcatatccgaagtagatgtccaaagactccgagaattcagaattgcaaccgacaccatattttcgaccaatgtagcagagaaatgctccatcaaggtgagtagccaaagagggggtacaggaggaggttttggacctgagaatgtgctagacagtgaccatttgtggacatattgggctccaagggatggtgacaaagaggaccactggattgaattcagagcagatgaagggatgaggttcaatgtgatcaggattcaagaggcgattggactaggtcagaggatcaaacggcatgaaatttgtgtcgatggtaaaatagtagttaatggaaccacagtgggtcacaagggacttcacagacttgaagagggagtagtccatggccaaacagtaagaattagaattaaagaatcaagaggagggcttcctttaatttcatccattggcctgcattctgatccctattggcccccagataaaggtgtgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004560 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006516 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009100 GO:0009987 GO:0015928 GO:0016787 GO:0016798 GO:0019538 GO:0030163 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:1901135 GO:1901136 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00511 map00511

Pfam Domains

Protein Families

Alpha_L_fucos F5_F8_type_C

Protein Analysis

387

Amino Acids

43.31

Weight (kDa)

6.28

Isoelectric Point (pI)

32.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003070)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g28480 FvH4_7g28490
malus_domestica	MD01G1188500.v1.1 MD01G1188600.v1.1
prunus_persica	Prupe.2G285300_v2.0.a1
pyrus_communis	pycom01g20020 pycom01g20030
rosa_chinensis	RchiOBHm_Chr1g0375771 RchiOBHm_Chr1g0375821 RchiOBHm_Chr1g0375841 RchiOBHm_Chr1g0375871
rosa_laevigata	RLG00000026648 RLG00000026649 RLG00000026652 RLG00000026654
rosa_multiflora	Rmu_sc0000487.1_g000052 Rmu_sc0001943.1_g000004 Rmu_sc0001943.1_g000006 Rmu_sc0001943.1_g000007
rosa_roxburghii	Rroxscaffold_4G00282570 Rroxscaffold_4G00282610 Rroxscaffold_4G00282640
rosa_rugosa	Rorug01G0391800 Rorug01G0391900 Rorug01G0392000
rosa_samantha	Rh1AG403600 Rh1AG403700 Rh1AG403800 Rh1BG367200 Rh1BG367300 Rh1CG379800 Rh1CG380000 Rh1CG380100 Rh1DG397200 Rh1DG397300
rosa_wichuraiana	Rw0G000980 Rw0G023580 Rw4G005900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	47
AccB7I	CCANNNNNTGG	2 cut(s)	205, 860
AciI	CCGC	2 cut(s)	263, 416
AclWI	GGATC	3 cut(s)	494, 965, 1127
AcoI	YGGCCR	2 cut(s)	229, 1057
AcsI	RAATTY	4 cut(s)	606, 707, 887, 972
AfaI	GTAC	2 cut(s)	191, 790
AfiI	CCNNNNNNNGG	5 cut(s)	205, 444, 784, 860, 1154
AgsI	TTSAA	6 cut(s)	59, 76, 887, 916, 932, 1040
AjnI	CCWGG	1 cut(s)	305
AluBI	AGCT	3 cut(s)	379, 589, 598
AluI	AGCT	3 cut(s)	379, 589, 598
Alw26I	GTCTC	1 cut(s)	544
AlwI	GGATC	3 cut(s)	494, 965, 1127
AoxI	GGCC	6 cut(s)	34, 179, 229, 1057, 1120, 1142
ApoI	RAATTY	4 cut(s)	606, 707, 887, 972
ArsI	GACNNNNNNTTYG	2 cut(s)	675, 707
Asp700I	GAANNNNTTC	1 cut(s)	26
AspLEI	GCGC	1 cut(s)	88
AspS9I	GGNCC	5 cut(s)	432, 447, 806, 874, 1143
AsuC2I	CCSGG	1 cut(s)	52
AsuHPI	GGTGA	5 cut(s)	509, 570, 640, 781, 875
AvaII	GGWCC	4 cut(s)	432, 447, 806, 874
BalI	TGGCCA	2 cut(s)	231, 1059
BanI	GGYRCC	1 cut(s)	47
BanII	GRGCYC	2 cut(s)	675, 853
BccI	CCATC	7 cut(s)	158, 384, 446, 549, 770, 854, 977
BceAI	ACGGC	1 cut(s)	980
BciT130I	CCWGG	1 cut(s)	307
BclI	TGATCA	1 cut(s)	921
BcnI	CCSGG	1 cut(s)	52
BcoDI	GTCTC	1 cut(s)	544
BfaI	CTAG	2 cut(s)	821, 947
BisI	GCNGC	1 cut(s)	264
BlpI	GCTNAGC	2 cut(s)	267, 590
BlsI	GCNGC	1 cut(s)	265
Bme1390I	CCNGG	2 cut(s)	52, 307
Bme18I	GGWCC	4 cut(s)	432, 447, 806, 874
BmgT120I	GGNCC	5 cut(s)	432, 447, 806, 874, 1143
BmiI	GGNNCC	4 cut(s)	49, 852, 1006, 1145
BmrFI	CCNGG	2 cut(s)	52, 307
BmrI	ACTGGG	1 cut(s)	74
BmsI	GCATC	2 cut(s)	82, 112
BmuI	ACTGGG	1 cut(s)	74
BplI	GAGNNNNNCTC	2 cut(s)	743, 775
BpmI	CTGGAG	1 cut(s)	356
Bpu1102I	GCTNAGC	2 cut(s)	267, 590
BpuEI	CTTGAG	1 cut(s)	59
BpuMI	CCSGG	1 cut(s)	52
BsaJI	CCNNGG	6 cut(s)	218, 232, 274, 306, 854, 1054
BsaXI	ACNNNNNCTCC	2 cut(s)	640, 670
Bsc4I	CCNNNNNNNGG	5 cut(s)	205, 444, 784, 860, 1154
Bse1I	ACTGG	3 cut(s)	37, 80, 884
Bse3DI	GCAATG	1 cut(s)	481
BseBI	CCWGG	1 cut(s)	307
BseDI	CCNNGG	6 cut(s)	218, 232, 274, 306, 854, 1054
BseGI	GGATG	5 cut(s)	111, 560, 865, 912, 1112
BseLI	CCNNNNNNNGG	5 cut(s)	205, 444, 784, 860, 1154
BseMI	GCAATG	1 cut(s)	481
BseMII	CTCAG	3 cut(s)	380, 633, 801
BseNI	ACTGG	3 cut(s)	37, 80, 884
BseRI	GAGGAG	2 cut(s)	810, 1107
BseYI	CCCAGC	2 cut(s)	64, 407
BshFI	GGCC	6 cut(s)	36, 181, 231, 1059, 1122, 1144
BshNI	GGYRCC	1 cut(s)	47
BsiSI	CCGG	1 cut(s)	51
BslFI	GGGAC	3 cut(s)	323, 523, 1038
BslI	CCNNNNNNNGG	5 cut(s)	205, 444, 784, 860, 1154
BsmAI	GTCTC	1 cut(s)	544
BsmFI	GGGAC	3 cut(s)	323, 523, 1038
BsmI	GAATGC	2 cut(s)	472, 1126
BsnI	GGCC	6 cut(s)	36, 181, 231, 1059, 1122, 1144
Bsp1286I	GDGCHC	2 cut(s)	675, 853
Bsp143I	GATC	5 cut(s)	319, 499, 921, 957, 1132
Bsp1720I	GCTNAGC	2 cut(s)	267, 590
Bsp19I	CCATGG	2 cut(s)	232, 1054
BspACI	CCGC	2 cut(s)	263, 416
BspANI	GGCC	6 cut(s)	36, 181, 231, 1059, 1122, 1144
BspCNI	CTCAG	3 cut(s)	379, 632, 802
BspLI	GGNNCC	4 cut(s)	49, 852, 1006, 1145
BspPI	GGATC	3 cut(s)	494, 965, 1127
BspT107I	GGYRCC	1 cut(s)	47
BsrDI	GCAATG	1 cut(s)	481
BsrI	ACTGG	3 cut(s)	37, 80, 884
BssECI	CCNNGG	6 cut(s)	218, 232, 274, 306, 854, 1054
BssMI	GATC	5 cut(s)	319, 499, 921, 957, 1132
BssT1I	CCWWGG	4 cut(s)	218, 232, 854, 1054
Bst2UI	CCWGG	1 cut(s)	307
Bst4CI	ACNGT	4 cut(s)	652, 827, 1012, 1066
Bst6I	CTCTTC	1 cut(s)	1035
BstAPI	GCANNNNNTGC	1 cut(s)	122
BstC8I	GCNNGC	6 cut(s)	97, 127, 472, 525, 596, 1124
BstDEI	CTNAG	7 cut(s)	186, 267, 366, 582, 590, 619, 810
BstDSI	CCRYGG	3 cut(s)	232, 274, 1054
BstF5I	GGATG	5 cut(s)	111, 560, 865, 912, 1112
BstHHI	GCGC	1 cut(s)	88
BstKTI	GATC	5 cut(s)	322, 502, 924, 960, 1135
BstMAI	GTCTC	1 cut(s)	544
BstMBI	GATC	5 cut(s)	319, 499, 921, 957, 1132
BstMWI	GCNNNNNNNGC	5 cut(s)	92, 122, 340, 413, 595
BstNI	CCWGG	1 cut(s)	307
BstNSI	RCATGY	1 cut(s)	429
BstSCI	CCNGG	2 cut(s)	50, 305
BsuRI	GGCC	6 cut(s)	36, 181, 231, 1059, 1122, 1144
BtgI	CCRYGG	3 cut(s)	232, 274, 1054
BtgZI	GCGATG	2 cut(s)	252, 549
BtsCI	GGATG	5 cut(s)	111, 560, 865, 912, 1112
BtsIMutI	CAGTG	5 cut(s)	30, 192, 832, 877, 1017
Cac8I	GCNNGC	6 cut(s)	97, 127, 472, 525, 596, 1124
CfoI	GCGC	1 cut(s)	88
Cfr13I	GGNCC	5 cut(s)	432, 447, 806, 874, 1143
Csp6I	GTAC	2 cut(s)	190, 789
CviAII	CATG	6 cut(s)	161, 233, 317, 426, 968, 1055
CviQI	GTAC	2 cut(s)	190, 789
DdeI	CTNAG	7 cut(s)	186, 267, 366, 582, 590, 619, 810
DpnI	GATC	5 cut(s)	321, 501, 923, 959, 1134
DpnII	GATC	5 cut(s)	319, 499, 921, 957, 1132
EaeI	YGGCCR	2 cut(s)	229, 1057
Eam1104I	CTCTTC	1 cut(s)	1035
EarI	CTCTTC	1 cut(s)	1035
Eco130I	CCWWGG	4 cut(s)	218, 232, 854, 1054
Eco24I	GRGCYC	2 cut(s)	675, 853
Eco47I	GGWCC	4 cut(s)	432, 447, 806, 874
EcoRI	GAATTC	2 cut(s)	707, 887
EcoRII	CCWGG	1 cut(s)	305
EcoT14I	CCWWGG	4 cut(s)	218, 232, 854, 1054
EcoT38I	GRGCYC	2 cut(s)	675, 853
ErhI	CCWWGG	4 cut(s)	218, 232, 854, 1054
FaeI	CATG	6 cut(s)	164, 236, 320, 429, 971, 1058
FalI	AAGNNNNNCTT	2 cut(s)	202, 234
FaqI	GGGAC	3 cut(s)	323, 523, 1038
FatI	CATG	6 cut(s)	160, 232, 316, 425, 967, 1054
FauI	CCCGC	1 cut(s)	409
FbaI	TGATCA	1 cut(s)	921
Fnu4HI	GCNGC	1 cut(s)	264
FokI	GGATG	5 cut(s)	118, 567, 872, 919, 1099
FriOI	GRGCYC	2 cut(s)	675, 853
Fsp4HI	GCNGC	1 cut(s)	264
FspBI	CTAG	2 cut(s)	821, 947
GlaI	GCGC	1 cut(s)	87
GluI	GCNGC	1 cut(s)	264
GsaI	CCCAGC	2 cut(s)	68, 411
GsuI	CTGGAG	1 cut(s)	356
HaeIII	GGCC	6 cut(s)	36, 181, 231, 1059, 1122, 1144
HapII	CCGG	1 cut(s)	51
HhaI	GCGC	1 cut(s)	88
Hin1II	CATG	6 cut(s)	164, 236, 320, 429, 971, 1058
Hin6I	GCGC	1 cut(s)	86
HinP1I	GCGC	1 cut(s)	86
HinfI	GANTC	4 cut(s)	575, 699, 928, 1085
HpaII	CCGG	1 cut(s)	51
HphI	GGTGA	5 cut(s)	509, 570, 640, 781, 875
Hpy166II	GTNNAC	4 cut(s)	22, 192, 435, 840
Hpy188I	TCNGA	9 cut(s)	447, 548, 574, 682, 704, 713, 893, 954, 1132
Hpy188III	TCNNGA	4 cut(s)	248, 925, 932, 1089
Hpy8I	GTNNAC	4 cut(s)	22, 192, 435, 840
HpyAV	CCTTC	2 cut(s)	192, 896
HpyCH4III	ACNGT	4 cut(s)	652, 827, 1012, 1066
HpyCH4IV	ACGT	1 cut(s)	285
HpyCH4V	TGCA	5 cut(s)	125, 152, 470, 719, 1126
HpyF10VI	GCNNNNNNNGC	5 cut(s)	92, 122, 340, 413, 595
HpyF3I	CTNAG	7 cut(s)	186, 267, 366, 582, 590, 619, 810
HpySE526I	ACGT	1 cut(s)	285
Hsp92II	CATG	6 cut(s)	164, 236, 320, 429, 971, 1058
HspAI	GCGC	1 cut(s)	86
Ksp22I	TGATCA	1 cut(s)	921
Kzo9I	GATC	5 cut(s)	319, 499, 921, 957, 1132
LmnI	GCTCC	2 cut(s)	764, 856
LweI	GCATC	2 cut(s)	82, 112
MaeI	CTAG	2 cut(s)	821, 947
MaeII	ACGT	1 cut(s)	285
MaeIII	GTNAC	6 cut(s)	369, 576, 639, 827, 863, 1016
MalI	GATC	5 cut(s)	321, 501, 923, 959, 1134
MboI	GATC	5 cut(s)	319, 499, 921, 957, 1132
MboII	GAAGA	2 cut(s)	131, 1052
MfeI	CAATTG	1 cut(s)	459
MhlI	GDGCHC	2 cut(s)	675, 853
MlsI	TGGCCA	2 cut(s)	231, 1059
MluNI	TGGCCA	2 cut(s)	231, 1059
MlyI	GAGTC	2 cut(s)	584, 693
MmeI	TCCRAC	1 cut(s)	376
Mox20I	TGGCCA	2 cut(s)	231, 1059
MroXI	GAANNNNTTC	1 cut(s)	26
MscI	TGGCCA	2 cut(s)	231, 1059
MseI	TTAA	4 cut(s)	258, 999, 1080, 1106
MslI	CAYNNNNRTG	3 cut(s)	162, 237, 767
Msp20I	TGGCCA	2 cut(s)	231, 1059
MspI	CCGG	1 cut(s)	51
MspR9I	CCNGG	2 cut(s)	52, 307
MunI	CAATTG	1 cut(s)	459
Mva1269I	GAATGC	2 cut(s)	472, 1126
MvaI	CCWGG	1 cut(s)	307
MwoI	GCNNNNNNNGC	5 cut(s)	92, 122, 340, 413, 595
NciI	CCSGG	1 cut(s)	52
NcoI	CCATGG	2 cut(s)	232, 1054
NdeII	GATC	5 cut(s)	319, 499, 921, 957, 1132
NlaIII	CATG	6 cut(s)	164, 236, 320, 429, 971, 1058
NlaIV	GGNNCC	4 cut(s)	49, 852, 1006, 1145
NmuCI	GTSAC	4 cut(s)	576, 827, 863, 1016
NspI	RCATGY	1 cut(s)	429
PctI	GAATGC	2 cut(s)	472, 1126
PdmI	GAANNNNTTC	1 cut(s)	26
PfeI	GAWTC	2 cut(s)	928, 1085
PflFI	GACNNNGTC	1 cut(s)	948
PflMI	CCANNNNNTGG	2 cut(s)	205, 860
PkrI	GCNGC	1 cut(s)	265
PleI	GAGTC	2 cut(s)	583, 693
PpsI	GAGTC	2 cut(s)	583, 693
Psp6I	CCWGG	1 cut(s)	305
PspFI	CCCAGC	2 cut(s)	64, 407
PspGI	CCWGG	1 cut(s)	305
PspN4I	GGNNCC	4 cut(s)	49, 852, 1006, 1145
PspPI	GGNCC	5 cut(s)	432, 447, 806, 874, 1143
PsyI	GACNNNGTC	1 cut(s)	948
RsaI	GTAC	2 cut(s)	191, 790
RsaNI	GTAC	2 cut(s)	190, 789
RseI	CAYNNNNRTG	3 cut(s)	162, 237, 767
SaqAI	TTAA	4 cut(s)	258, 999, 1080, 1106
SatI	GCNGC	1 cut(s)	264
Sau3AI	GATC	5 cut(s)	319, 499, 921, 957, 1132
Sau96I	GGNCC	5 cut(s)	432, 447, 806, 874, 1143
SchI	GAGTC	2 cut(s)	584, 693
ScrFI	CCNGG	2 cut(s)	52, 307
SduI	GDGCHC	2 cut(s)	675, 853
SfaNI	GCATC	2 cut(s)	82, 112
SinI	GGWCC	4 cut(s)	432, 447, 806, 874
SmiMI	CAYNNNNRTG	3 cut(s)	162, 237, 767
SmlI	CTYRAG	1 cut(s)	38
SmoI	CTYRAG	1 cut(s)	38
SsiI	CCGC	2 cut(s)	263, 416
SspMI	CTAG	2 cut(s)	821, 947
StyD4I	CCNGG	2 cut(s)	50, 305
StyI	CCWWGG	4 cut(s)	218, 232, 854, 1054
TaaI	ACNGT	4 cut(s)	652, 827, 1012, 1066
TaiI	ACGT	1 cut(s)	288
TaqI	TCGA	4 cut(s)	603, 665, 737, 981
TatI	WGTACW	1 cut(s)	189
TauI	GCSGC	1 cut(s)	266
TfiI	GAWTC	2 cut(s)	928, 1085
Tru1I	TTAA	4 cut(s)	258, 999, 1080, 1106
Tru9I	TTAA	4 cut(s)	258, 999, 1080, 1106
TscAI	CASTG	5 cut(s)	37, 199, 832, 884, 1017
TseFI	GTSAC	4 cut(s)	576, 827, 863, 1016
Tsp45I	GTSAC	4 cut(s)	576, 827, 863, 1016
TspDTI	ATGAA	3 cut(s)	915, 984, 1101
TspRI	CASTG	5 cut(s)	37, 199, 832, 884, 1017
Tth111I	GACNNNGTC	1 cut(s)	948
Van91I	CCANNNNNTGG	2 cut(s)	205, 860
VpaK11BI	GGWCC	4 cut(s)	432, 447, 806, 874
XapI	RAATTY	4 cut(s)	606, 707, 887, 972
XceI	RCATGY	1 cut(s)	429
XmnI	GAANNNNTTC	1 cut(s)	26
XspI	CTAG	2 cut(s)	821, 947

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.