Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0003070

Physical Location & Seq

Genomic Coordinates Reverse (-)

50236098 .. 50236853

Gene Structure 756 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0392000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGGCCTCCATTGATGCTATCACTGCTAGCTGTGCTGCCTCCCTTGCGCTTGCAGAGGGAGGTAGTGCTCCTGATCTGGGGAGAATTGGTGGCGGCCCTGTTCGTCGGTCTTCCAAATCTTTTCTGATTGGGAAGTCTCTGACCTGCCGACCGGTCAACCCTACGGTCTTCAAGGCTCACCTCATTTGTACCTGGATGGATGTCACTCTGGTGATGTTGAAGAAGAAGTCGGGCAAGCTACTTGGGAGTAGGAACAAGAATCATCGCCCTAGCAAGAAGCCGAATGTCACTGCTTTACGACTCTCTTACCCTGCAGTTACTGGTATTGATCCCAGCCCTAGCGACAAGGGCAAGGGAAAGCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004560 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006516 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009100 GO:0009987 GO:0015928 GO:0016787 GO:0016798 GO:0019538 GO:0030163 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:1901135 GO:1901136 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00511 map00511

Pfam Domains

Protein Families

Alpha_L_fucos F5_F8_type_C

Protein Analysis

121

Amino Acids

12.67

Weight (kDa)

10.39

Isoelectric Point (pI)

41.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003070)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g28480 FvH4_7g28490
malus_domestica	MD01G1188500.v1.1 MD01G1188600.v1.1
prunus_persica	Prupe.2G285300_v2.0.a1
pyrus_communis	pycom01g20020 pycom01g20030
rosa_chinensis	RchiOBHm_Chr1g0375771 RchiOBHm_Chr1g0375821 RchiOBHm_Chr1g0375841 RchiOBHm_Chr1g0375871
rosa_laevigata	RLG00000026648 RLG00000026649 RLG00000026652 RLG00000026654
rosa_multiflora	Rmu_sc0000487.1_g000052 Rmu_sc0001943.1_g000004 Rmu_sc0001943.1_g000006 Rmu_sc0001943.1_g000007
rosa_roxburghii	Rroxscaffold_4G00282570 Rroxscaffold_4G00282610 Rroxscaffold_4G00282640
rosa_rugosa	Rorug01G0391800 Rorug01G0391900 Rorug01G0392000
rosa_samantha	Rh1AG403600 Rh1AG403700 Rh1AG403800 Rh1BG367200 Rh1BG367300 Rh1CG379800 Rh1CG380000 Rh1CG380100 Rh1DG397200 Rh1DG397300
rosa_wichuraiana	Rw0G000980 Rw0G023580 Rw4G005900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	152
AciI	CCGC	1 cut(s)	93
AclWI	GGATC	1 cut(s)	323
AfaI	GTAC	1 cut(s)	190
AfiI	CCNNNNNNNGG	1 cut(s)	77
AgeI	ACCGGT	1 cut(s)	151
AgsI	TTSAA	2 cut(s)	172, 220
AjnI	CCWGG	1 cut(s)	191
AleI	CACNNNNGTG	1 cut(s)	209
AluBI	AGCT	3 cut(s)	30, 238, 361
AluI	AGCT	3 cut(s)	30, 238, 361
Alw21I	GWGCWC	1 cut(s)	70
Alw26I	GTCTC	1 cut(s)	141
AlwI	GGATC	1 cut(s)	323
AlwNI	CAGNNNCTG	1 cut(s)	320
AoxI	GGCC	2 cut(s)	3, 94
ApeKI	GCWGC	1 cut(s)	35
AsiGI	ACCGGT	1 cut(s)	151
AspLEI	GCGC	1 cut(s)	49
AspS9I	GGNCC	1 cut(s)	95
AsuHPI	GGTGA	2 cut(s)	170, 223
AsuNHI	GCTAGC	1 cut(s)	26
BbsI	GAAGAC	2 cut(s)	102, 160
Bbv12I	GWGCWC	1 cut(s)	70
BbvI	GCAGC	1 cut(s)	22
BccI	CCATC	1 cut(s)	190
BciT130I	CCWGG	1 cut(s)	193
BcoDI	GTCTC	1 cut(s)	141
BfaI	CTAG	3 cut(s)	27, 270, 339
BfmI	CTRYAG	1 cut(s)	312
BfuAI	ACCTGC	1 cut(s)	152
BisI	GCNGC	2 cut(s)	36, 94
BlsI	GCNGC	2 cut(s)	37, 95
Bme1390I	CCNGG	1 cut(s)	193
BmgT120I	GGNCC	1 cut(s)	95
BmrFI	CCNGG	1 cut(s)	193
BmsI	GCATC	1 cut(s)	4
BmtI	GCTAGC	1 cut(s)	30
BpiI	GAAGAC	2 cut(s)	102, 160
BsaWI	WCCGGW	1 cut(s)	151
BsaXI	ACNNNNNCTCC	2 cut(s)	73, 103
Bsc4I	CCNNNNNNNGG	1 cut(s)	77
Bse118I	RCCGGY	1 cut(s)	151
Bse1I	ACTGG	1 cut(s)	325
BseBI	CCWGG	1 cut(s)	193
BseGI	GGATG	2 cut(s)	201, 205
BseLI	CCNNNNNNNGG	1 cut(s)	77
BseNI	ACTGG	1 cut(s)	325
BseXI	GCAGC	1 cut(s)	22
BseYI	CCCAGC	1 cut(s)	332
Bsh1285I	CGRYCG	1 cut(s)	152
BshFI	GGCC	2 cut(s)	5, 96
BshTI	ACCGGT	1 cut(s)	151
BsiEI	CGRYCG	1 cut(s)	152
BsiHKAI	GWGCWC	1 cut(s)	70
BsiSI	CCGG	1 cut(s)	152
BslI	CCNNNNNNNGG	1 cut(s)	77
BsmAI	GTCTC	1 cut(s)	141
BsnI	GGCC	2 cut(s)	5, 96
Bsp1286I	GDGCHC	1 cut(s)	70
Bsp143I	GATC	2 cut(s)	73, 328
BspACI	CCGC	1 cut(s)	93
BspANI	GGCC	2 cut(s)	5, 96
BspMAI	CTGCAG	1 cut(s)	316
BspMI	ACCTGC	1 cut(s)	152
BspOI	GCTAGC	1 cut(s)	30
BspPI	GGATC	1 cut(s)	323
BsrFI	RCCGGY	1 cut(s)	151
BsrI	ACTGG	1 cut(s)	325
BssAI	RCCGGY	1 cut(s)	151
BssMI	GATC	2 cut(s)	73, 328
Bst2UI	CCWGG	1 cut(s)	193
Bst4CI	ACNGT	1 cut(s)	166
BstC8I	GCNNGC	3 cut(s)	28, 51, 236
BstF5I	GGATG	2 cut(s)	201, 205
BstHHI	GCGC	1 cut(s)	49
BstKTI	GATC	2 cut(s)	76, 331
BstMAI	GTCTC	1 cut(s)	141
BstMBI	GATC	2 cut(s)	73, 328
BstMCI	CGRYCG	1 cut(s)	152
BstMWI	GCNNNNNNNGC	4 cut(s)	23, 32, 44, 348
BstNI	CCWGG	1 cut(s)	193
BstSCI	CCNGG	1 cut(s)	191
BstSFI	CTRYAG	1 cut(s)	312
BstV1I	GCAGC	1 cut(s)	22
BstV2I	GAAGAC	2 cut(s)	102, 160
BsuRI	GGCC	2 cut(s)	5, 96
BtgZI	GCGATG	1 cut(s)	248
BtsCI	GGATG	2 cut(s)	201, 205
BtsI	GCAGTG	2 cut(s)	21, 288
BtsIMutI	CAGTG	2 cut(s)	21, 288
BveI	ACCTGC	1 cut(s)	152
Cac8I	GCNNGC	3 cut(s)	28, 51, 236
CaiI	CAGNNNCTG	1 cut(s)	320
CfoI	GCGC	1 cut(s)	49
Cfr10I	RCCGGY	1 cut(s)	151
Cfr13I	GGNCC	1 cut(s)	95
Csp6I	GTAC	1 cut(s)	189
CspAI	ACCGGT	1 cut(s)	151
CviJI	RGCY	8 cut(s)	5, 30, 96, 176, 238, 280, 336, 361
CviKI_1	RGCY	8 cut(s)	5, 30, 96, 176, 238, 280, 336, 361
CviQI	GTAC	1 cut(s)	189
DpnI	GATC	2 cut(s)	75, 330
DpnII	GATC	2 cut(s)	73, 328
EcoRII	CCWGG	1 cut(s)	191
Fnu4HI	GCNGC	2 cut(s)	36, 94
FokI	GGATG	2 cut(s)	208, 212
Fsp4HI	GCNGC	2 cut(s)	36, 94
FspBI	CTAG	3 cut(s)	27, 270, 339
GlaI	GCGC	1 cut(s)	48
GluI	GCNGC	2 cut(s)	36, 94
GsaI	CCCAGC	1 cut(s)	336
HaeIII	GGCC	2 cut(s)	5, 96
HapII	CCGG	1 cut(s)	152
HhaI	GCGC	1 cut(s)	49
Hin6I	GCGC	1 cut(s)	47
HinP1I	GCGC	1 cut(s)	47
HincII	GTYRAC	1 cut(s)	157
HindII	GTYRAC	1 cut(s)	157
HindIII	AAGCTT	1 cut(s)	359
HinfI	GANTC	2 cut(s)	259, 300
HpaII	CCGG	1 cut(s)	152
HphI	GGTGA	2 cut(s)	170, 223
Hpy166II	GTNNAC	1 cut(s)	157
Hpy188I	TCNGA	2 cut(s)	126, 141
Hpy188III	TCNNGA	1 cut(s)	71
Hpy8I	GTNNAC	1 cut(s)	157
Hpy99I	CGWCG	1 cut(s)	108
HpyCH4III	ACNGT	1 cut(s)	166
HpyCH4V	TGCA	2 cut(s)	53, 314
HpyF10VI	GCNNNNNNNGC	4 cut(s)	23, 32, 44, 348
HspAI	GCGC	1 cut(s)	47
Kzo9I	GATC	2 cut(s)	73, 328
LmnI	GCTCC	1 cut(s)	73
Lsp1109I	GCAGC	1 cut(s)	22
LweI	GCATC	1 cut(s)	4
MaeI	CTAG	3 cut(s)	27, 270, 339
MaeIII	GTNAC	3 cut(s)	202, 286, 316
MalI	GATC	2 cut(s)	75, 330
MboI	GATC	2 cut(s)	73, 328
MboII	GAAGA	4 cut(s)	102, 160, 232, 235
MhlI	GDGCHC	1 cut(s)	70
MluCI	AATT	1 cut(s)	84
MlyI	GAGTC	1 cut(s)	294
MnlI	CCTC	5 cut(s)	16, 49, 49, 53, 191
MseI	TTAA	1 cut(s)	364
MslI	CAYNNNNRTG	1 cut(s)	209
MspI	CCGG	1 cut(s)	152
MspR9I	CCNGG	1 cut(s)	193
MvaI	CCWGG	1 cut(s)	193
MwoI	GCNNNNNNNGC	4 cut(s)	23, 32, 44, 348
NdeII	GATC	2 cut(s)	73, 328
NheI	GCTAGC	1 cut(s)	26
NmuCI	GTSAC	2 cut(s)	202, 286
OliI	CACNNNNGTG	1 cut(s)	209
PfeI	GAWTC	1 cut(s)	259
PinAI	ACCGGT	1 cut(s)	151
PkrI	GCNGC	2 cut(s)	37, 95
PleI	GAGTC	1 cut(s)	294
PpsI	GAGTC	1 cut(s)	294
Psp6I	CCWGG	1 cut(s)	191
PspFI	CCCAGC	1 cut(s)	332
PspGI	CCWGG	1 cut(s)	191
PspPI	GGNCC	1 cut(s)	95
PstI	CTGCAG	1 cut(s)	316
PstNI	CAGNNNCTG	1 cut(s)	320
RsaI	GTAC	1 cut(s)	190
RsaNI	GTAC	1 cut(s)	189
RseI	CAYNNNNRTG	1 cut(s)	209
SaqAI	TTAA	1 cut(s)	364
SatI	GCNGC	2 cut(s)	36, 94
Sau3AI	GATC	2 cut(s)	73, 328
Sau96I	GGNCC	1 cut(s)	95
SchI	GAGTC	1 cut(s)	294
ScrFI	CCNGG	1 cut(s)	193
SduI	GDGCHC	1 cut(s)	70
SetI	ASST	7 cut(s)	32, 64, 146, 183, 194, 240, 363
SfaNI	GCATC	1 cut(s)	4
SfcI	CTRYAG	1 cut(s)	312
SmiMI	CAYNNNNRTG	1 cut(s)	209
Sse9I	AATT	1 cut(s)	84
SsiI	CCGC	1 cut(s)	93
SspMI	CTAG	3 cut(s)	27, 270, 339
StyD4I	CCNGG	1 cut(s)	191
TaaI	ACNGT	1 cut(s)	166
TaqII	GACCGA	1 cut(s)	96
TasI	AATT	1 cut(s)	84
TauI	GCSGC	1 cut(s)	96
TfiI	GAWTC	1 cut(s)	259
Tru1I	TTAA	1 cut(s)	364
Tru9I	TTAA	1 cut(s)	364
TscAI	CASTG	2 cut(s)	28, 295
TseFI	GTSAC	2 cut(s)	202, 286
TseI	GCWGC	1 cut(s)	35
Tsp45I	GTSAC	2 cut(s)	202, 286
TspRI	CASTG	2 cut(s)	28, 295
XspI	CTAG	3 cut(s)	27, 270, 339

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.