Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0003070

Physical Location & Seq

Genomic Coordinates Reverse (-)

63123323 .. 63124308

Gene Structure 986 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG403600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGTCCTATTACTTTTCAGATTGGTTCTCCATGGTGAGGGAGTTACAGAGCTCCATTAACATATTCTCGGATTCTGATCCGGTTGTTAGATGGGTTGGCGATGAGCAAGGCTTCACCAGAAGCACAAGCTGGTCCACCATTAATCGGAGTTCATTATCAATTGAGAATGCAAGCATTGAAGGTTATCTCAACACTGATGATCCACAAGGAACAGACTGGTTGCCGCCAGAATGTGACGTTTCGATAAGAAATGGATGGTTTTGGCACAAATCAGAGTCGCCTAAGAAGCTAAGCAAGCTACTTGAAATTTACTATAACTCGGTAGGAAGAAATTGTGTGCTGTTACTCAATGTGCCTCATAATTCAACCAGACTTATATCCGAAGTAGATGTGAAAAGACTTGGAGATTTGAGAGGTGCAATTGACACAATATTTTCTAGCAACTTAGCTGAAAGATGCTTCATCAAAGTGAGTAGCCAAAGAGGTGGCAAAGGAGGAGGTTTTGGACCTGAAAATGTGCTAGACAGTGACCATTTGTGGACGTATTGGGCTCCAAAGGATGGTGACAAAGAGGAGCATTGGATTGAATTTAGAGGCAGAGATAAAGATAAAGGATTGAGGTTCAACGTGATTAGGATTCAAGAGGCAATCGGGCTTGGCCAGAGAATCAAAAGGCATGAAATTTTTGTGGATGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004560 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006516 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009100 GO:0009987 GO:0015928 GO:0016787 GO:0016798 GO:0019538 GO:0030163 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:1901135 GO:1901136 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00511 map00511

Pfam Domains

Protein Families

Alpha_L_fucos F5_F8_type_C

Protein Analysis

232

Amino Acids

26.58

Weight (kDa)

5.78

Isoelectric Point (pI)

54.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003070)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g28480 FvH4_7g28490
malus_domestica	MD01G1188500.v1.1 MD01G1188600.v1.1
prunus_persica	Prupe.2G285300_v2.0.a1
pyrus_communis	pycom01g20020 pycom01g20030
rosa_chinensis	RchiOBHm_Chr1g0375771 RchiOBHm_Chr1g0375821 RchiOBHm_Chr1g0375841 RchiOBHm_Chr1g0375871
rosa_laevigata	RLG00000026648 RLG00000026649 RLG00000026652 RLG00000026654
rosa_multiflora	Rmu_sc0000487.1_g000052 Rmu_sc0001943.1_g000004 Rmu_sc0001943.1_g000006 Rmu_sc0001943.1_g000007
rosa_roxburghii	Rroxscaffold_4G00282570 Rroxscaffold_4G00282610 Rroxscaffold_4G00282640
rosa_rugosa	Rorug01G0391800 Rorug01G0391900 Rorug01G0392000
rosa_samantha	Rh1AG403600 Rh1AG403700 Rh1AG403800 Rh1BG367200 Rh1BG367300 Rh1CG379800 Rh1CG380000 Rh1CG380100 Rh1DG397200 Rh1DG397300
rosa_wichuraiana	Rw0G000980 Rw0G023580 Rw4G005900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	560
AciI	CCGC	1 cut(s)	224
AclWI	GGATC	2 cut(s)	71, 194
AcoI	YGGCCR	1 cut(s)	658
AcsI	RAATTY	3 cut(s)	306, 587, 681
AfiI	CCNNNNNNNGG	3 cut(s)	36, 144, 560
AgsI	TTSAA	6 cut(s)	179, 305, 366, 587, 625, 641
AluBI	AGCT	5 cut(s)	51, 129, 289, 298, 449
AluI	AGCT	5 cut(s)	51, 129, 289, 298, 449
Alw21I	GWGCWC	1 cut(s)	53
AlwI	GGATC	2 cut(s)	71, 194
AoxI	GGCC	1 cut(s)	658
ApoI	RAATTY	3 cut(s)	306, 587, 681
AseI	ATTAAT	1 cut(s)	141
AspS9I	GGNCC	2 cut(s)	132, 506
AsuHPI	GGTGA	3 cut(s)	46, 106, 575
AvaII	GGWCC	2 cut(s)	132, 506
BalI	TGGCCA	1 cut(s)	660
BanII	GRGCYC	2 cut(s)	53, 553
Bbv12I	GWGCWC	1 cut(s)	53
BccI	CCATC	4 cut(s)	84, 249, 554, 686
BfaI	CTAG	2 cut(s)	438, 521
BisI	GCNGC	1 cut(s)	224
BlpI	GCTNAGC	1 cut(s)	290
BlsI	GCNGC	1 cut(s)	225
Bme18I	GGWCC	2 cut(s)	132, 506
BmgT120I	GGNCC	2 cut(s)	132, 506
BmiI	GGNNCC	1 cut(s)	552
BmsI	GCATC	1 cut(s)	446
Bpu1102I	GCTNAGC	1 cut(s)	290
BsaBI	GATNNNNATC	1 cut(s)	75
BsaJI	CCNNGG	1 cut(s)	30
BsaWI	WCCGGW	1 cut(s)	79
Bsc4I	CCNNNNNNNGG	3 cut(s)	36, 144, 560
Bse1I	ACTGG	1 cut(s)	221
Bse8I	GATNNNNATC	1 cut(s)	75
BseDI	CCNNGG	1 cut(s)	30
BseGI	GGATG	3 cut(s)	260, 565, 697
BseJI	GATNNNNATC	1 cut(s)	75
BseLI	CCNNNNNNNGG	3 cut(s)	36, 144, 560
BseNI	ACTGG	1 cut(s)	221
BseRI	GAGGAG	2 cut(s)	510, 587
BshFI	GGCC	1 cut(s)	660
BsiHKAI	GWGCWC	1 cut(s)	53
BsiSI	CCGG	1 cut(s)	80
BslI	CCNNNNNNNGG	3 cut(s)	36, 144, 560
BsmI	GAATGC	1 cut(s)	172
BsnI	GGCC	1 cut(s)	660
Bsp1286I	GDGCHC	2 cut(s)	53, 553
Bsp143I	GATC	2 cut(s)	76, 199
Bsp1720I	GCTNAGC	1 cut(s)	290
Bsp19I	CCATGG	1 cut(s)	30
BspACI	CCGC	1 cut(s)	224
BspANI	GGCC	1 cut(s)	660
BspLI	GGNNCC	1 cut(s)	552
BspPI	GGATC	2 cut(s)	71, 194
BsrI	ACTGG	1 cut(s)	221
BssECI	CCNNGG	1 cut(s)	30
BssMI	GATC	2 cut(s)	76, 199
BssT1I	CCWWGG	1 cut(s)	30
Bst4CI	ACNGT	1 cut(s)	527
BstC8I	GCNNGC	2 cut(s)	172, 296
BstDEI	CTNAG	3 cut(s)	282, 290, 445
BstDSI	CCRYGG	1 cut(s)	30
BstF5I	GGATG	3 cut(s)	260, 565, 697
BstKTI	GATC	2 cut(s)	79, 202
BstMBI	GATC	2 cut(s)	76, 199
BstMWI	GCNNNNNNNGC	2 cut(s)	286, 295
BstXI	CCANNNNNNTGG	1 cut(s)	485
BsuRI	GGCC	1 cut(s)	660
BtgI	CCRYGG	1 cut(s)	30
BtgZI	GCGATG	1 cut(s)	114
BtsCI	GGATG	3 cut(s)	260, 565, 697
BtsIMutI	CAGTG	2 cut(s)	192, 532
Cac8I	GCNNGC	2 cut(s)	172, 296
Cfr13I	GGNCC	2 cut(s)	132, 506
CviAII	CATG	2 cut(s)	31, 677
DdeI	CTNAG	3 cut(s)	282, 290, 445
DpnI	GATC	2 cut(s)	78, 201
DpnII	GATC	2 cut(s)	76, 199
EaeI	YGGCCR	1 cut(s)	658
Ecl136II	GAGCTC	1 cut(s)	51
Eco130I	CCWWGG	1 cut(s)	30
Eco24I	GRGCYC	2 cut(s)	53, 553
Eco47I	GGWCC	2 cut(s)	132, 506
Eco53kI	GAGCTC	1 cut(s)	51
EcoICRI	GAGCTC	1 cut(s)	51
EcoT14I	CCWWGG	1 cut(s)	30
EcoT38I	GRGCYC	2 cut(s)	53, 553
ErhI	CCWWGG	1 cut(s)	30
FaeI	CATG	2 cut(s)	34, 680
FaiI	YATR	6 cut(s)	32, 62, 315, 360, 377, 678
FatI	CATG	2 cut(s)	30, 676
Fnu4HI	GCNGC	1 cut(s)	224
FokI	GGATG	2 cut(s)	267, 572
FriOI	GRGCYC	2 cut(s)	53, 553
Fsp4HI	GCNGC	1 cut(s)	224
FspBI	CTAG	2 cut(s)	438, 521
GluI	GCNGC	1 cut(s)	224
HaeIII	GGCC	1 cut(s)	660
HapII	CCGG	1 cut(s)	80
Hin1II	CATG	2 cut(s)	34, 680
HinfI	GANTC	4 cut(s)	71, 275, 637, 666
HpaII	CCGG	1 cut(s)	80
HphI	GGTGA	3 cut(s)	46, 106, 575
Hpy166II	GTNNAC	2 cut(s)	135, 540
Hpy188I	TCNGA	6 cut(s)	19, 70, 76, 147, 274, 382
Hpy188III	TCNNGA	1 cut(s)	641
Hpy8I	GTNNAC	2 cut(s)	135, 540
HpyAV	CCTTC	1 cut(s)	173
HpyCH4III	ACNGT	1 cut(s)	527
HpyCH4IV	ACGT	3 cut(s)	237, 542, 627
HpyCH4V	TGCA	2 cut(s)	170, 419
HpyF10VI	GCNNNNNNNGC	2 cut(s)	286, 295
HpyF3I	CTNAG	3 cut(s)	282, 290, 445
HpySE526I	ACGT	3 cut(s)	237, 542, 627
Hsp92II	CATG	2 cut(s)	34, 680
Kzo9I	GATC	2 cut(s)	76, 199
LmnI	GCTCC	3 cut(s)	56, 556, 574
LpnPI	CCDG	8 cut(s)	93, 115, 130, 202, 240, 382, 522, 674
LweI	GCATC	1 cut(s)	446
MaeI	CTAG	2 cut(s)	438, 521
MaeII	ACGT	3 cut(s)	237, 542, 627
MaeIII	GTNAC	5 cut(s)	42, 233, 342, 527, 563
MalI	GATC	2 cut(s)	78, 201
MboI	GATC	2 cut(s)	76, 199
MboII	GAAGA	1 cut(s)	339
MfeI	CAATTG	2 cut(s)	159, 420
MhlI	GDGCHC	2 cut(s)	53, 553
MlsI	TGGCCA	1 cut(s)	660
MluCI	AATT	7 cut(s)	159, 306, 331, 361, 420, 587, 681
MluNI	TGGCCA	1 cut(s)	660
MlyI	GAGTC	1 cut(s)	284
Mox20I	TGGCCA	1 cut(s)	660
MscI	TGGCCA	1 cut(s)	660
MseI	TTAA	2 cut(s)	57, 141
MslI	CAYNNNNRTG	1 cut(s)	467
Msp20I	TGGCCA	1 cut(s)	660
MspI	CCGG	1 cut(s)	80
MunI	CAATTG	2 cut(s)	159, 420
Mva1269I	GAATGC	1 cut(s)	172
MwoI	GCNNNNNNNGC	2 cut(s)	286, 295
NcoI	CCATGG	1 cut(s)	30
NdeII	GATC	2 cut(s)	76, 199
NlaIII	CATG	2 cut(s)	34, 680
NlaIV	GGNNCC	1 cut(s)	552
NmuCI	GTSAC	3 cut(s)	233, 527, 563
PctI	GAATGC	1 cut(s)	172
PfeI	GAWTC	3 cut(s)	71, 637, 666
PflMI	CCANNNNNTGG	1 cut(s)	560
PkrI	GCNGC	1 cut(s)	225
PleI	GAGTC	1 cut(s)	283
PpsI	GAGTC	1 cut(s)	283
PshBI	ATTAAT	1 cut(s)	141
Psp124BI	GAGCTC	1 cut(s)	53
PspN4I	GGNNCC	1 cut(s)	552
PspPI	GGNCC	2 cut(s)	132, 506
RseI	CAYNNNNRTG	1 cut(s)	467
SacI	GAGCTC	1 cut(s)	53
SaqAI	TTAA	2 cut(s)	57, 141
SatI	GCNGC	1 cut(s)	224
Sau3AI	GATC	2 cut(s)	76, 199
Sau96I	GGNCC	2 cut(s)	132, 506
SchI	GAGTC	1 cut(s)	284
SduI	GDGCHC	2 cut(s)	53, 553
SfaNI	GCATC	1 cut(s)	446
SinI	GGWCC	2 cut(s)	132, 506
SmiMI	CAYNNNNRTG	1 cut(s)	467
Sse9I	AATT	7 cut(s)	159, 306, 331, 361, 420, 587, 681
SsiI	CCGC	1 cut(s)	224
SspI	AATATT	1 cut(s)	432
SspMI	CTAG	2 cut(s)	438, 521
SstI	GAGCTC	1 cut(s)	53
StyI	CCWWGG	1 cut(s)	30
TaaI	ACNGT	1 cut(s)	527
TaiI	ACGT	3 cut(s)	240, 545, 630
TaqI	TCGA	1 cut(s)	242
TasI	AATT	7 cut(s)	159, 306, 331, 361, 420, 587, 681
TauI	GCSGC	1 cut(s)	226
TfiI	GAWTC	3 cut(s)	71, 637, 666
Tru1I	TTAA	2 cut(s)	57, 141
Tru9I	TTAA	2 cut(s)	57, 141
TscAI	CASTG	2 cut(s)	199, 532
TseFI	GTSAC	3 cut(s)	233, 527, 563
Tsp45I	GTSAC	3 cut(s)	233, 527, 563
TspDTI	ATGAA	3 cut(s)	141, 451, 693
TspRI	CASTG	2 cut(s)	199, 532
Van91I	CCANNNNNTGG	1 cut(s)	560
VpaK11BI	GGWCC	2 cut(s)	132, 506
VspI	ATTAAT	1 cut(s)	141
XapI	RAATTY	3 cut(s)	306, 587, 681
XspI	CTAG	2 cut(s)	438, 521

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.