MD01G1188500.v1.1

alpha-L-fucosidase 1-like

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
Physical Location & Seq
Reverse (-)
28689164 .. 28691654
2491 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1188500.v1.1.491

Sequence Viewer

Length: 1476 bp
ATGGCTAAAATATGGTGCTCTTTGTGGATAATCGCATTCTTTCAGCTGTGCACTTGCACCTTCTCCAAGCTTGAGCAAGTCCCAACACCTCCACTGCCAATCCTGCCCCTTCCCACATACGCCCAGCTCAAATGGCAGCAAAGGGAGATCATCATGTTCCTCCACTTCGGAGTGAACACATTCACCGACTCCGAATGGGGAACGGGGCACGAAAGCCCCGGAATATTCAACCCAGTCGGTCTCGACGCCAACCAATGGGCCAGAACAGCGTCGGACGCCGGCATATCACTGATGATACTGACTGCCAAACACCACGATGGGTTTTGCTTGTGGCCTTCAAAGTACACGGATCACTCCGTGGCAAATAGTCCTTGGCGAAATGGTCACGGGGATGTTGTGCATGAGCTGGTTGATGCAGCAAATCCCCGTGGGATTGATATAGGGCTCTATCTCTCACCGTGGGATAGACATGATCGGAGATACGGGCATGAGATTGCCTACAACCAGTACTACTTAGCTCAACTGCAAGAGCTCCTCAGCAGATATGGGGGTGTGAAAGAGATTTGGTTTGATGGGAATAAGGGGAAGAATGCACCAAACATGTCCTATTATTTCACAGATTGGTTCTCCATGGTGAAGGAGTTGCAGAGCTCCATTAACATATTTTCGGATGCTGGTCCGGATGTTAGATGGGTTGGAAATGAGCAAGGGTTTGCCGGGAGTACGTGTTGGTCCACCATTAATCGGACCTCACTATCAATTGGCAATGCAAGCATTGAAGATTATCTCAACAAGGGCGATCCAAAAGGGACGGATTGGTTGCCGGCAGAGTGCGACGTTTCGATCCGAGATGGATGGTTTTGGCATAAATCAGAGTCACCCAAGAGGCTAAGCAAGCTACTTGAAATTTACTACAACTCGGTGGGGAGAAATTGTGTGCTGCTACTCAATGTGCCTCCTAATCCGACTGGGCTCATAGCCGACGAAGATGTTCAAAGACTGAGAGAATTCAGAAGTGCAATCGACGCAATATTTTCTACCAATTTAGCAGAGAAATGTTCTATCAAAGTTAGTAGCCGAAGAGGAGGCAAAGGAGGAGGTTTTGGACCTGAAAATATGCTAGACAATGACCATTTGTGGACATATTGGGCTCCAAGGGATGATGAAAAGGAGAGCCATTGGATTGAATTTAGAAGCACAGGATCAGATGAAGGGCTGAGATTCAATGTGATTCGGATCCAGGAGGCGATCGGGCTTGGTCAGAGGATCAAACGGCACGAAATTTACGTGGACGGTAAAAGAGTGGTAAATGGAACCACAGTAGGGCACAAGAGGCTTCACAGACTTGGAGGGGGAGTTGTACATGGCAAACTTGTAAGAATAAAAATTGGAGATTCAAGGGGGCTGCCCTTAATTTCTTCCATTGGCCTGCATTTTGATCCCTTTTGGCACCCAATTGGGCAGCCATCGCAATAA

Protein Analysis

492

Amino Acids

55.53

Weight (kDa)

6.81

Isoelectric Point (pI)

45.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Alpha_L_fucos PF01120 74 - 336 2.7e-35 Alpha-L-fucosidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1449
AccB7I CCANNNNNTGG 1 cut(s) 255
AccIII TCCGGA 1 cut(s) 679
AclWI GGATC 8 cut(s) 357, 794, 838, 1210, 1231, 1244, 1274, 1433
AcsI RAATTY 4 cut(s) 906, 1007, 1187, 1281
AcyI GRCGYC 2 cut(s) 246, 276
AdeI CACNNNGTG 1 cut(s) 358
AfaI GTAC 4 cut(s) 344, 509, 724, 1362
AfiI CCNNNNNNNGG 3 cut(s) 255, 744, 1323
AflIII ACRYGT 2 cut(s) 600, 725
AgsI TTSAA 8 cut(s) 229, 339, 779, 905, 995, 1187, 1225, 1398
AjnI CCWGG 1 cut(s) 1239
AluBI AGCT 8 cut(s) 46, 70, 127, 406, 518, 532, 651, 898
AluI AGCT 8 cut(s) 46, 70, 127, 406, 518, 532, 651, 898
Alw21I GWGCWC 4 cut(s) 20, 53, 534, 653
Alw26I GTCTC 1 cut(s) 245
Alw44I GTGCAC 1 cut(s) 49
AlwI GGATC 8 cut(s) 357, 794, 838, 1210, 1231, 1244, 1274, 1433
Aor13HI TCCGGA 1 cut(s) 679
AoxI GGCC 3 cut(s) 258, 332, 1426
ApaLI GTGCAC 1 cut(s) 49
ApeKI GCWGC 5 cut(s) 136, 416, 940, 1405, 1462
ApoI RAATTY 4 cut(s) 906, 1007, 1187, 1281
AseI ATTAAT 1 cut(s) 741
Asp700I GAANNNNTTC 2 cut(s) 179, 990
AspS9I GGNCC 5 cut(s) 258, 677, 732, 747, 1106
AsuC2I CCSGG 2 cut(s) 219, 718
AsuHPI GGTGA 4 cut(s) 175, 447, 646, 870
AvaII GGWCC 4 cut(s) 677, 732, 747, 1106
BaeGI GKGCMC 3 cut(s) 53, 210, 1329
BamHI GGATCC 1 cut(s) 1236
BanI GGYRCC 1 cut(s) 1449
BanII GRGCYC 5 cut(s) 447, 534, 653, 975, 1153
Bbv12I GWGCWC 4 cut(s) 20, 53, 534, 653
BbvCI CCTCAGC 1 cut(s) 536
BbvI GCAGC 4 cut(s) 148, 428, 927, 1392
BccI CCATC 6 cut(s) 311, 566, 684, 845, 849, 1474
BceAI ACGGC 1 cut(s) 1289
BciT130I CCWGG 1 cut(s) 1241
BcnI CCSGG 2 cut(s) 219, 718
BcoDI GTCTC 1 cut(s) 245
BfaI CTAG 1 cut(s) 1121
BisI GCNGC 5 cut(s) 137, 417, 941, 1406, 1463
BlpI GCTNAGC 1 cut(s) 890
BlsI GCNGC 5 cut(s) 138, 418, 942, 1407, 1464
BmcAI AGTACT 1 cut(s) 509
Bme1390I CCNGG 3 cut(s) 219, 718, 1241
Bme18I GGWCC 4 cut(s) 677, 732, 747, 1106
BmgT120I GGNCC 5 cut(s) 258, 677, 732, 747, 1106
BmiI GGNNCC 4 cut(s) 1152, 1238, 1315, 1451
BmrFI CCNGG 3 cut(s) 219, 718, 1241
BmrI ACTGGG 2 cut(s) 227, 978
BmsI GCATC 2 cut(s) 403, 661
BmuI ACTGGG 2 cut(s) 227, 978
Bpu10I CCTNAGC 1 cut(s) 536
Bpu1102I GCTNAGC 1 cut(s) 890
BpuEI CTTGAG 1 cut(s) 92
BpuMI CCSGG 2 cut(s) 219, 718
BsaAI YACGTR 2 cut(s) 726, 1288
BsaBI GATNNNNATC 1 cut(s) 1235
BsaHI GRCGYC 2 cut(s) 246, 276
BsaI GGTCTC 1 cut(s) 245
BsaJI CCNNGG 7 cut(s) 217, 357, 371, 427, 458, 630, 1154
BsaWI WCCGGW 1 cut(s) 679
BsaXI ACNNNNNCTCC 6 cut(s) 712, 742, 919, 949, 1341, 1371
Bsc4I CCNNNNNNNGG 3 cut(s) 255, 744, 1323
Bse118I RCCGGY 2 cut(s) 278, 823
Bse1I ACTGG 3 cut(s) 233, 505, 973
Bse3DI GCAATG 1 cut(s) 772
Bse8I GATNNNNATC 1 cut(s) 1235
BseAI TCCGGA 1 cut(s) 679
BseBI CCWGG 1 cut(s) 1241
BseDI CCNNGG 7 cut(s) 217, 357, 371, 427, 458, 630, 1154
BseGI GGATG 5 cut(s) 397, 676, 688, 860, 1165
BseJI GATNNNNATC 1 cut(s) 1235
BseLI CCNNNNNNNGG 3 cut(s) 255, 744, 1323
BseMI GCAATG 1 cut(s) 772
BseMII CTCAG 3 cut(s) 550, 992, 1208
BseNI ACTGG 3 cut(s) 233, 505, 973
BseRI GAGGAG 3 cut(s) 524, 1098, 1110
BseSI GKGCMC 3 cut(s) 53, 210, 1329
BseXI GCAGC 4 cut(s) 148, 428, 927, 1392
BseYI CCCAGC 1 cut(s) 123
Bsh1285I CGRYCG 1 cut(s) 1251
BshFI GGCC 3 cut(s) 260, 334, 1428
BshNI GGYRCC 1 cut(s) 1449
BsiEI CGRYCG 1 cut(s) 1251
BsiHKAI GWGCWC 4 cut(s) 20, 53, 534, 653
BsiSI CCGG 5 cut(s) 219, 279, 680, 717, 824
BslFI GGGAC 2 cut(s) 65, 823
BslI CCNNNNNNNGG 3 cut(s) 255, 744, 1323
BsmAI GTCTC 1 cut(s) 245
BsmFI GGGAC 2 cut(s) 65, 823
BsmI GAATGC 2 cut(s) 35, 595
BsnI GGCC 3 cut(s) 260, 334, 1428
Bso31I GGTCTC 1 cut(s) 245
Bsp1286I GDGCHC 9 cut(s) 20, 53, 210, 447, 534, 653, 975, 1153, 1329
Bsp13I TCCGGA 1 cut(s) 679
Bsp1407I TGTACA 1 cut(s) 1360
Bsp1720I GCTNAGC 1 cut(s) 890
Bsp19I CCATGG 1 cut(s) 630
BspANI GGCC 3 cut(s) 260, 334, 1428
BspCNI CTCAG 3 cut(s) 549, 993, 1209
BspEI TCCGGA 1 cut(s) 679
BspLI GGNNCC 4 cut(s) 1152, 1238, 1315, 1451
BspPI GGATC 8 cut(s) 357, 794, 838, 1210, 1231, 1244, 1274, 1433
BspT107I GGYRCC 1 cut(s) 1449
BspTNI GGTCTC 1 cut(s) 245
BsrDI GCAATG 1 cut(s) 772
BsrFI RCCGGY 2 cut(s) 278, 823
BsrGI TGTACA 1 cut(s) 1360
BsrI ACTGG 3 cut(s) 233, 505, 973
BssAI RCCGGY 2 cut(s) 278, 823
BssECI CCNNGG 7 cut(s) 217, 357, 371, 427, 458, 630, 1154
BssNI GRCGYC 2 cut(s) 246, 276
BssT1I CCWWGG 3 cut(s) 371, 630, 1154
Bst2UI CCWGG 1 cut(s) 1241
Bst4CI ACNGT 3 cut(s) 459, 1295, 1321
Bst6I CTCTTC 1 cut(s) 1075
BstACI GRCGYC 2 cut(s) 246, 276
BstAUI TGTACA 1 cut(s) 1360
BstBAI YACGTR 2 cut(s) 726, 1288
BstC8I GCNNGC 5 cut(s) 280, 772, 825, 896, 1430
BstDEI CTNAG 5 cut(s) 514, 536, 890, 1001, 1217
BstDSI CCRYGG 4 cut(s) 357, 427, 458, 630
BstF5I GGATG 5 cut(s) 397, 676, 688, 860, 1165
BstMAI GTCTC 1 cut(s) 245
BstMCI CGRYCG 1 cut(s) 1251
BstMWI GCNNNNNNNGC 9 cut(s) 103, 133, 266, 275, 771, 895, 1025, 1333, 1468
BstNI CCWGG 1 cut(s) 1241
BstNSI RCATGY 1 cut(s) 604
BstSCI CCNGG 3 cut(s) 217, 716, 1239
BstSLI GKGCMC 3 cut(s) 53, 210, 1329
BstV1I GCAGC 4 cut(s) 148, 428, 927, 1392
BstX2I RGATCY 1 cut(s) 1236
BstYI RGATCY 1 cut(s) 1236
BsuRI GGCC 3 cut(s) 260, 334, 1428
BtgI CCRYGG 4 cut(s) 357, 427, 458, 630
BtgZI GCGATG 1 cut(s) 1452
BtsCI GGATG 5 cut(s) 397, 676, 688, 860, 1165
BtsI GCAGTG 1 cut(s) 92
BtsIMutI CAGTG 2 cut(s) 92, 287
Cac8I GCNNGC 5 cut(s) 280, 772, 825, 896, 1430
Cfr10I RCCGGY 2 cut(s) 278, 823
Cfr13I GGNCC 5 cut(s) 258, 677, 732, 747, 1106
CseI GACGC 4 cut(s) 254, 258, 284, 1034
Csp6I GTAC 4 cut(s) 343, 508, 723, 1361
CviAII CATG 7 cut(s) 154, 401, 470, 488, 601, 631, 1364
CviQI GTAC 4 cut(s) 343, 508, 723, 1361
DdeI CTNAG 5 cut(s) 514, 536, 890, 1001, 1217
DraIII CACNNNGTG 1 cut(s) 358
Eam1104I CTCTTC 1 cut(s) 1075
EarI CTCTTC 1 cut(s) 1075
Ecl136II GAGCTC 2 cut(s) 532, 651
Eco130I CCWWGG 3 cut(s) 371, 630, 1154
Eco24I GRGCYC 5 cut(s) 447, 534, 653, 975, 1153
Eco31I GGTCTC 1 cut(s) 245
Eco47I GGWCC 4 cut(s) 677, 732, 747, 1106
Eco53kI GAGCTC 2 cut(s) 532, 651
EcoICRI GAGCTC 2 cut(s) 532, 651
EcoRI GAATTC 1 cut(s) 1007
EcoRII CCWGG 1 cut(s) 1239
EcoT14I CCWWGG 3 cut(s) 371, 630, 1154
EcoT38I GRGCYC 5 cut(s) 447, 534, 653, 975, 1153
ErhI CCWWGG 3 cut(s) 371, 630, 1154
FaeI CATG 7 cut(s) 157, 404, 473, 491, 604, 634, 1367
FaqI GGGAC 2 cut(s) 65, 823
FatI CATG 7 cut(s) 153, 400, 469, 487, 600, 630, 1363
Fnu4HI GCNGC 5 cut(s) 137, 417, 941, 1406, 1463
FokI GGATG 5 cut(s) 404, 683, 695, 867, 1172
FriOI GRGCYC 5 cut(s) 447, 534, 653, 975, 1153
Fsp4HI GCNGC 5 cut(s) 137, 417, 941, 1406, 1463
FspBI CTAG 1 cut(s) 1121
GluI GCNGC 5 cut(s) 137, 417, 941, 1406, 1463
GsaI CCCAGC 1 cut(s) 127
HaeIII GGCC 3 cut(s) 260, 334, 1428
HapII CCGG 5 cut(s) 219, 279, 680, 717, 824
HgaI GACGC 4 cut(s) 254, 258, 284, 1034
Hin1I GRCGYC 2 cut(s) 246, 276
Hin1II CATG 7 cut(s) 157, 404, 473, 491, 604, 634, 1367
HindIII AAGCTT 1 cut(s) 68
HinfI GANTC 5 cut(s) 188, 875, 1221, 1231, 1394
HpaII CCGG 5 cut(s) 219, 279, 680, 717, 824
HphI GGTGA 4 cut(s) 175, 447, 646, 870
Hpy166II GTNNAC 6 cut(s) 51, 175, 345, 735, 1140, 1291
Hpy188III TCNNGA 2 cut(s) 242, 680
Hpy8I GTNNAC 6 cut(s) 51, 175, 345, 735, 1140, 1291
Hpy99I CGWCG 5 cut(s) 248, 274, 839, 986, 1028
HpyAV CCTTC 5 cut(s) 70, 119, 345, 631, 1205
HpyCH4III ACNGT 3 cut(s) 459, 1295, 1321
HpyCH4IV ACGT 3 cut(s) 725, 837, 1287
HpyF10VI GCNNNNNNNGC 9 cut(s) 103, 133, 266, 275, 771, 895, 1025, 1333, 1468
HpyF3I CTNAG 5 cut(s) 514, 536, 890, 1001, 1217
HpySE526I ACGT 3 cut(s) 725, 837, 1287
Hsp92I GRCGYC 2 cut(s) 246, 276
Hsp92II CATG 7 cut(s) 157, 404, 473, 491, 604, 634, 1367
Kpn2I TCCGGA 1 cut(s) 679
KroI GCCGGC 2 cut(s) 278, 823
KroNI GCCGGC 2 cut(s) 280, 825
LmnI GCTCC 3 cut(s) 537, 656, 1156
Lsp1109I GCAGC 4 cut(s) 148, 428, 927, 1392
LweI GCATC 2 cut(s) 403, 661
MaeI CTAG 1 cut(s) 1121
MaeII ACGT 3 cut(s) 725, 837, 1287
MaeIII GTNAC 2 cut(s) 383, 876
MboII GAAGA 5 cut(s) 598, 791, 998, 1092, 1410
MfeI CAATTG 2 cut(s) 759, 1455
MflI RGATCY 1 cut(s) 1236
MhlI GDGCHC 9 cut(s) 20, 53, 210, 447, 534, 653, 975, 1153, 1329
MlyI GAGTC 2 cut(s) 182, 884
MmeI TCCRAC 3 cut(s) 252, 676, 989
MroI TCCGGA 1 cut(s) 679
MroNI GCCGGC 2 cut(s) 278, 823
MroXI GAANNNNTTC 2 cut(s) 179, 990
MseI TTAA 3 cut(s) 657, 741, 1412
MslI CAYNNNNRTG 2 cut(s) 315, 390
MspA1I CMGCKG 1 cut(s) 46
MspI CCGG 5 cut(s) 219, 279, 680, 717, 824
MspR9I CCNGG 3 cut(s) 219, 718, 1241
MunI CAATTG 2 cut(s) 759, 1455
Mva1269I GAATGC 2 cut(s) 35, 595
MvaI CCWGG 1 cut(s) 1241
MwoI GCNNNNNNNGC 9 cut(s) 103, 133, 266, 275, 771, 895, 1025, 1333, 1468
NaeI GCCGGC 2 cut(s) 280, 825
NciI CCSGG 2 cut(s) 219, 718
NcoI CCATGG 1 cut(s) 630
NgoMIV GCCGGC 2 cut(s) 278, 823
NlaIII CATG 7 cut(s) 157, 404, 473, 491, 604, 634, 1367
NlaIV GGNNCC 4 cut(s) 1152, 1238, 1315, 1451
NmuCI GTSAC 2 cut(s) 383, 876
NspI RCATGY 1 cut(s) 604
PciI ACATGT 1 cut(s) 600
PcsI WCGNNNNNNNCGW 1 cut(s) 1284
PctI GAATGC 2 cut(s) 35, 595
PdiI GCCGGC 2 cut(s) 280, 825
PdmI GAANNNNTTC 2 cut(s) 179, 990
PfeI GAWTC 3 cut(s) 1221, 1231, 1394
PflMI CCANNNNNTGG 1 cut(s) 255
PfoI TCCNGGA 1 cut(s) 1239
PkrI GCNGC 5 cut(s) 138, 418, 942, 1407, 1464
Ple19I CGATCG 1 cut(s) 1251
PleI GAGTC 2 cut(s) 182, 883
PpsI GAGTC 2 cut(s) 182, 883
Ppu21I YACGTR 2 cut(s) 726, 1288
PscI ACATGT 1 cut(s) 600
PshBI ATTAAT 1 cut(s) 741
Psp124BI GAGCTC 2 cut(s) 534, 653
Psp6I CCWGG 1 cut(s) 1239
PspFI CCCAGC 1 cut(s) 123
PspGI CCWGG 1 cut(s) 1239
PspN4I GGNNCC 4 cut(s) 1152, 1238, 1315, 1451
PspPI GGNCC 5 cut(s) 258, 677, 732, 747, 1106
PsuI RGATCY 1 cut(s) 1236
PvuI CGATCG 1 cut(s) 1251
PvuII CAGCTG 1 cut(s) 46
RsaI GTAC 4 cut(s) 344, 509, 724, 1362
RsaNI GTAC 4 cut(s) 343, 508, 723, 1361
RseI CAYNNNNRTG 2 cut(s) 315, 390
SacI GAGCTC 2 cut(s) 534, 653
SaqAI TTAA 3 cut(s) 657, 741, 1412
SatI GCNGC 5 cut(s) 137, 417, 941, 1406, 1463
Sau96I GGNCC 5 cut(s) 258, 677, 732, 747, 1106
ScaI AGTACT 1 cut(s) 509
SchI GAGTC 2 cut(s) 182, 884
ScrFI CCNGG 3 cut(s) 219, 718, 1241
SduI GDGCHC 9 cut(s) 20, 53, 210, 447, 534, 653, 975, 1153, 1329
SfaNI GCATC 2 cut(s) 403, 661
SinI GGWCC 4 cut(s) 677, 732, 747, 1106
SmiMI CAYNNNNRTG 2 cut(s) 315, 390
SmlI CTYRAG 1 cut(s) 71
SmoI CTYRAG 1 cut(s) 71
SspI AATATT 2 cut(s) 225, 1032
SspMI CTAG 1 cut(s) 1121
SstI GAGCTC 2 cut(s) 534, 653
StyD4I CCNGG 3 cut(s) 217, 716, 1239
StyI CCWWGG 3 cut(s) 371, 630, 1154
TaaI ACNGT 3 cut(s) 459, 1295, 1321
TaiI ACGT 3 cut(s) 728, 840, 1290
TaqI TCGA 3 cut(s) 243, 842, 1023
TaqII GACCGA 1 cut(s) 227
TatI WGTACW 3 cut(s) 342, 507, 1360
TfiI GAWTC 3 cut(s) 1221, 1231, 1394
Tru1I TTAA 3 cut(s) 657, 741, 1412
Tru9I TTAA 3 cut(s) 657, 741, 1412
TscAI CASTG 2 cut(s) 99, 294
TseFI GTSAC 2 cut(s) 383, 876
TseI GCWGC 5 cut(s) 136, 416, 940, 1405, 1462
Tsp45I GTSAC 2 cut(s) 383, 876
TspDTI ATGAA 2 cut(s) 1179, 1224
TspGWI ACGGA 3 cut(s) 346, 362, 827
TspRI CASTG 2 cut(s) 99, 294
Van91I CCANNNNNTGG 1 cut(s) 255
VneI GTGCAC 1 cut(s) 49
VpaK11BI GGWCC 4 cut(s) 677, 732, 747, 1106
VspI ATTAAT 1 cut(s) 741
XapI RAATTY 4 cut(s) 906, 1007, 1187, 1281
XceI RCATGY 1 cut(s) 604
XmnI GAANNNNTTC 2 cut(s) 179, 990
XspI CTAG 1 cut(s) 1121
ZrmI AGTACT 1 cut(s) 509
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.